Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002509

Physical Location & Seq

Genomic Coordinates Forward (+)

76249287 .. 76253674

Gene Structure 4388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG484400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1653 bp

ATGGCAACTCTAGGCACCCCAGTTATCTCTCTCCCACGTCATCCCACCACTCCCTCCCCAACCGTCAATAACGACCTTCGCTTCCCAACCCAACCGCTTCTCCCACTGATAGACCAATGCACCACCATCAACCAGCTCAAGCAAGTCCATGCCCAAATGCTCAAAACAGCCCTATTCTTCGACCCTTATTCCGCTAGTAAGCTCATCACAGCTGCTGCTCTCTCCTCCTTCTCGAGCCTCGACTATGCACGCCAAGTGTTCGACGAAATTCCTGACCCAAATCTGTTCACTTGGAACGCCCTCATTCGCGCGTATGCCTCCAGCCCTGACCCAGTTGAAAGCATTCTCGTATTTCTGCAGATGCTCGACGAGTGTGATGAGTGCCCCAATAAGTTCACTTTCCCTTTTCTGCTCAAGGCGGCGTCGGAGCTCCGGGCTTCCAAGGTTGGGAGAGGTTTTCATGCCATGGTGATAAAAGCCCAGCTGGGTTCGGATGTTTACATTGTTAATTCGCTCATTCACTTTTATGGGTCGTGCGGGGATTTGGATTTGGCGCGTTTGGTGTTTTTGAAGACTTATAAGAAGGATGTTGTTACTTGGAATTCTGTTATCACGGCTTTTGCTCAGGGGAATTGCCCTGAGGTGGCGTTGGAGTTGTTTAAGGAAATGGAGGTGGAGAATATGAAGCCGAATGATGTCACCATGGTTAGTGTCTTGTCAGCTTGCGCAAAGAAGGCAGATTTGGAGTTTGGGAGGTGGGTTTGTTTGAATGTTGAAAGGCATGGAGTTGAAGAGAACTTGACTTTGAATAATGCTATGCTAGATATGCACAAAGCTATTCGATCGGTTGCCTCATCTGAAACAAGGGTGTTAAGGAACCCAGACTCAGCAGGAATTGGGATCAAACCAGCAGCGCCATCAAAAACCGTTCATGTCCAATTCCAATTACACAAGAAGTGCCGCTTCGGTGATAATTTTCTCTTAGTAGGGAATGAATCTATCATTGGACAGTGGAACCCTTCAAGTGCTATACCCCTTAACTGGTCAGATGGAAACATTTGGACAGTTGACCTGGACATACCAATTGACAGAGCAATCCAGTTCAAGTTTATACTAAAGAAAAGCACAGGAGATCTGTTGTGGCAACCAGGTCCAGATCGAATTCTTCACACCTGGGATACCAACAGCACTATAACCATAGCCGAAGACTGGAAAAATGCGAAACTTCAGAAATTAACTGAAAAGAAAATTGTCAGTCAAAATGAGACGCTACTTACAAACCAGGCTGTGACTTATAGCATACCAACTTATAGCAACAAGAATGAGTTTGCTTTCAAAGAGAGGGCGTTTGGTTCTGAAAAGGGAACTCCGCTTCAGGAAAGCCAAGCAGTTTGCATTGCAGATGACGGTGTTTGCATCATGACAAGACCAACATCCTTAGGAAGCATGGATGAAGTTGAATATTATGACGATGAATATTACGATGATGACTGTGAATATGAAGATAGATATGAAGACGAAGACATCATGTTTACTTATGAAGGAGGCCGTGTTCTCGTGCCTGGTTTAGTACAAGGGGTAACTGGAAAAACCATTGATATCAGTGCTGATGGCTCGATTGTGATTGATGCGAGAGGGGAACACAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

550

Amino Acids

61.37

Weight (kDa)

4.96

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	195 - 244	7.8e-12	PPR repeat family
PPR	PF01535	198 - 227	1.3e-06	PPR repeat
CBM_20	PF00686	309 - 397	4.9e-19	Starch binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01260 AT5G01260 AT5G01260
fragaria_vesca	FvH4_3g38430 FvH4_6g11650 FvH4_6g11650 FvH4_6g11650
malus_domestica	MD04G1150500.v1.1 MD12G1164600.v1.1
prunus_persica	Prupe.6G058700_v2.0.a1 Prupe.6G275300_v2.0.a1 Prupe.6G275300_v2.0.a1
pyrus_communis	pycom04g13610 pycom04g13620 pycom11g06380 pycom12g15750
rosa_chinensis	RchiOBHm_Chr3g0463311
rosa_laevigata	RLG00000024791 RLG00000036036
rosa_multiflora	Rmu_co8319585.1_g000001 Rmu_sc0000853.1_g000034 Rmu_sc0000923.1_g000002 Rmu_sc0040359.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011670 Rroxscaffold_6G00416670
rosa_rugosa	Rorug03G0063800 Rorug03G0063900 Rorug03G0064000 Rorug03G0064100 Rorug05G0396200
rosa_samantha	Rh3AG121700 Rh3BG126200 Rh3CG128100 Rh3DG127300 Rh5AG452900 Rh5BG471900 Rh5CG494300 Rh5DG484400
rosa_wichuraiana	Rw0G006070 Rw3G010340 Rw5G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
Acc16I	TGCGCA	1 cut(s)	727
AccB1I	GGYRCC	1 cut(s)	14
AccII	CGCG	3 cut(s)	309, 311, 556
AciI	CCGC	6 cut(s)	95, 192, 419, 537, 961, 1370
AclWI	GGATC	1 cut(s)	908
AcsI	RAATTY	3 cut(s)	267, 601, 1161
AcuI	CTGAAG	2 cut(s)	1211, 1358
AcyI	GRCGYC	1 cut(s)	422
AfaI	GTAC	1 cut(s)	1572
AfiI	CCNNNNNNNGG	4 cut(s)	447, 643, 1041, 1209
AjiI	CACGTC	1 cut(s)	38
AjnI	CCWGG	5 cut(s)	1071, 1147, 1172, 1281, 1561
AjuI	GAANNNNNNNTTGG	4 cut(s)	725, 757, 987, 1019
AloI	GAACNNNNNNTCC	2 cut(s)	1536, 1568
AluBI	AGCT	7 cut(s)	136, 202, 212, 430, 484, 722, 836
AluI	AGCT	7 cut(s)	136, 202, 212, 430, 484, 722, 836
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	1 cut(s)	1259
AlwI	GGATC	1 cut(s)	908
AlwNI	CAGNNNCTG	1 cut(s)	215
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	1 cut(s)	1546
ApeKI	GCWGC	3 cut(s)	212, 215, 911
ApoI	RAATTY	3 cut(s)	267, 601, 1161
Asp700I	GAANNNNTTC	1 cut(s)	342
AspLEI	GCGC	4 cut(s)	311, 556, 728, 916
AspS9I	GGNCC	1 cut(s)	1151
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	3 cut(s)	481, 691, 980
AvaI	CYCGRG	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	1151
AxyI	CCTNAGG	2 cut(s)	639, 1438
BaeGI	GKGCMC	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	432
BauI	CACGAG	1 cut(s)	1556
BbsI	GAAGAC	4 cut(s)	578, 1212, 1521, 1527
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	3 cut(s)	199, 202, 923
BccI	CCATC	4 cut(s)	134, 925, 1043, 1604
BceAI	ACGGC	2 cut(s)	630, 1533
BciT130I	CCWGG	5 cut(s)	1073, 1149, 1174, 1283, 1563
BciVI	GTATCC	1 cut(s)	1171
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	1259
BfaI	CTAG	3 cut(s)	11, 195, 821
BfmI	CTRYAG	1 cut(s)	356
BfoI	RGCGCY	1 cut(s)	917
BfuI	GTATCC	1 cut(s)	1171
BglII	AGATCT	1 cut(s)	1132
BisI	GCNGC	5 cut(s)	213, 216, 420, 912, 961
BlsI	GCNGC	5 cut(s)	214, 217, 421, 913, 962
Bme1390I	CCNGG	6 cut(s)	434, 1073, 1149, 1174, 1283, 1563
Bme18I	GGWCC	1 cut(s)	1151
BmeT110I	CYCGRG	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	1151
BmiI	GGNNCC	3 cut(s)	16, 878, 1016
BmrFI	CCNGG	6 cut(s)	434, 1073, 1149, 1174, 1283, 1563
BmrI	ACTGGG	2 cut(s)	14, 326
BmsI	GCATC	3 cut(s)	351, 1425, 1618
BmuI	ACTGGG	2 cut(s)	14, 326
BpiI	GAAGAC	4 cut(s)	578, 1212, 1521, 1527
BpmI	CTGGAG	1 cut(s)	304
Bpu10I	CCTNAGC	1 cut(s)	624
BpuEI	CTTGAG	2 cut(s)	122, 398
BpuMI	CCSGG	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	422
BsaJI	CCNNGG	4 cut(s)	441, 465, 702, 1173
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 1536, 1566
Bsc4I	CCNNNNNNNGG	4 cut(s)	447, 643, 1041, 1209
Bse1I	ACTGG	6 cut(s)	20, 332, 1046, 1099, 1214, 1588
Bse21I	CCTNAGG	2 cut(s)	639, 1438
Bse3DI	GCAATG	1 cut(s)	1395
BseBI	CCWGG	5 cut(s)	1073, 1149, 1174, 1283, 1563
BseDI	CCNNGG	4 cut(s)	441, 465, 702, 1173
BseGI	GGATG	5 cut(s)	40, 499, 592, 1433, 1456
BseLI	CCNNNNNNNGG	4 cut(s)	447, 643, 1041, 1209
BseMI	GCAATG	1 cut(s)	1395
BseMII	CTCAG	3 cut(s)	630, 638, 900
BseNI	ACTGG	6 cut(s)	20, 332, 1046, 1099, 1214, 1588
BseRI	GAGGAG	1 cut(s)	214
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	3 cut(s)	199, 202, 923
BseYI	CCCAGC	2 cut(s)	480, 484
Bsh1236I	CGCG	3 cut(s)	309, 311, 556
Bsh1285I	CGRYCG	1 cut(s)	845
BshFI	GGCC	1 cut(s)	1548
BshNI	GGYRCC	1 cut(s)	14
BsiEI	CGRYCG	1 cut(s)	845
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	433
BslI	CCNNNNNNNGG	4 cut(s)	447, 643, 1041, 1209
BsmAI	GTCTC	1 cut(s)	1259
BsmBI	CGTCTC	1 cut(s)	1259
BsmI	GAATGC	1 cut(s)	342
BsnI	GGCC	1 cut(s)	1548
BsoBI	CYCGRG	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	386, 432
Bsp143I	GATC	4 cut(s)	842, 900, 1132, 1156
Bsp19I	CCATGG	2 cut(s)	465, 702
BspACI	CCGC	6 cut(s)	95, 192, 419, 537, 961, 1370
BspANI	GGCC	1 cut(s)	1548
BspCNI	CTCAG	3 cut(s)	631, 637, 899
BspFNI	CGCG	3 cut(s)	309, 311, 556
BspHI	TCATGA	1 cut(s)	1419
BspLI	GGNNCC	3 cut(s)	16, 878, 1016
BspMAI	CTGCAG	1 cut(s)	360
BspPI	GGATC	1 cut(s)	908
BspT107I	GGYRCC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	1395
BsrI	ACTGG	6 cut(s)	20, 332, 1046, 1099, 1214, 1588
BssECI	CCNNGG	4 cut(s)	441, 465, 702, 1173
BssMI	GATC	4 cut(s)	842, 900, 1132, 1156
BssNI	GRCGYC	1 cut(s)	422
BssSI	CACGAG	1 cut(s)	1556
BssT1I	CCWWGG	3 cut(s)	441, 465, 702
Bst2BI	CACGAG	1 cut(s)	1556
Bst2UI	CCWGG	5 cut(s)	1073, 1149, 1174, 1283, 1563
Bst4CI	ACNGT	6 cut(s)	64, 928, 1011, 1066, 1409, 1493
Bst6I	CTCTTC	1 cut(s)	786
BstACI	GRCGYC	1 cut(s)	422
BstC8I	GCNNGC	2 cut(s)	250, 724
BstDEI	CTNAG	5 cut(s)	624, 639, 886, 982, 1438
BstDSI	CCRYGG	2 cut(s)	465, 702
BstF5I	GGATG	5 cut(s)	40, 499, 592, 1433, 1456
BstFNI	CGCG	3 cut(s)	309, 311, 556
BstH2I	RGCGCY	1 cut(s)	917
BstHHI	GCGC	4 cut(s)	311, 556, 728, 916
BstKTI	GATC	4 cut(s)	845, 903, 1135, 1159
BstMAI	GTCTC	1 cut(s)	1259
BstMBI	GATC	4 cut(s)	842, 900, 1132, 1156
BstMCI	CGRYCG	1 cut(s)	845
BstMWI	GCNNNNNNNGC	2 cut(s)	734, 826
BstNI	CCWGG	5 cut(s)	1073, 1149, 1174, 1283, 1563
BstSCI	CCNGG	6 cut(s)	432, 1071, 1147, 1172, 1281, 1561
BstSFI	CTRYAG	1 cut(s)	356
BstSLI	GKGCMC	1 cut(s)	386
BstUI	CGCG	3 cut(s)	309, 311, 556
BstV1I	GCAGC	3 cut(s)	199, 202, 923
BstV2I	GAAGAC	4 cut(s)	578, 1212, 1521, 1527
BstX2I	RGATCY	1 cut(s)	1132
BstYI	RGATCY	1 cut(s)	1132
Bsu36I	CCTNAGG	2 cut(s)	639, 1438
BsuI	GTATCC	1 cut(s)	1171
BsuRI	GGCC	1 cut(s)	1548
BtgI	CCRYGG	2 cut(s)	465, 702
BtrI	CACGTC	1 cut(s)	38
BtsCI	GGATG	5 cut(s)	40, 499, 592, 1433, 1456
BtsIMutI	CAGTG	3 cut(s)	104, 1016, 1609
Cac8I	GCNNGC	2 cut(s)	250, 724
CaiI	CAGNNNCTG	1 cut(s)	215
CciI	TCATGA	1 cut(s)	1419
CfoI	GCGC	4 cut(s)	311, 556, 728, 916
Cfr13I	GGNCC	1 cut(s)	1151
CseI	GACGC	2 cut(s)	411, 1276
CsiI	ACCWGGT	1 cut(s)	1147
Csp6I	GTAC	1 cut(s)	1571
CviAII	CATG	9 cut(s)	149, 461, 466, 703, 782, 932, 1420, 1447, 1528
CviQI	GTAC	1 cut(s)	1571
DdeI	CTNAG	5 cut(s)	624, 639, 886, 982, 1438
DpnI	GATC	4 cut(s)	844, 902, 1134, 1158
DpnII	GATC	4 cut(s)	842, 900, 1132, 1156
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	3 cut(s)	441, 465, 702
Eco24I	GRGCYC	1 cut(s)	432
Eco32I	GATATC	1 cut(s)	1600
Eco47I	GGWCC	1 cut(s)	1151
Eco53kI	GAGCTC	1 cut(s)	430
Eco57I	CTGAAG	2 cut(s)	1211, 1358
Eco81I	CCTNAGG	2 cut(s)	639, 1438
Eco88I	CYCGRG	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	430
EcoRI	GAATTC	2 cut(s)	601, 1161
EcoRII	CCWGG	5 cut(s)	1071, 1147, 1172, 1281, 1561
EcoRV	GATATC	1 cut(s)	1600
EcoT14I	CCWWGG	3 cut(s)	441, 465, 702
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	3 cut(s)	441, 465, 702
Esp3I	CGTCTC	1 cut(s)	1259
FaeI	CATG	9 cut(s)	152, 464, 469, 706, 785, 935, 1423, 1450, 1531
FalI	AAGNNNNNCTT	2 cut(s)	947, 979
FatI	CATG	9 cut(s)	148, 460, 465, 702, 781, 931, 1419, 1446, 1527
FauI	CCCGC	1 cut(s)	530
Fnu4HI	GCNGC	5 cut(s)	213, 216, 420, 912, 961
FokI	GGATG	5 cut(s)	27, 506, 599, 1420, 1463
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	5 cut(s)	213, 216, 420, 912, 961
FspBI	CTAG	3 cut(s)	11, 195, 821
FspI	TGCGCA	1 cut(s)	727
GlaI	GCGC	4 cut(s)	310, 555, 727, 915
GluI	GCNGC	5 cut(s)	213, 216, 420, 912, 961
GsaI	CCCAGC	2 cut(s)	484, 488
GsuI	CTGGAG	1 cut(s)	304
HaeII	RGCGCY	1 cut(s)	917
HaeIII	GGCC	1 cut(s)	1548
HapII	CCGG	1 cut(s)	433
HgaI	GACGC	2 cut(s)	411, 1276
HhaI	GCGC	4 cut(s)	311, 556, 728, 916
Hin1I	GRCGYC	1 cut(s)	422
Hin1II	CATG	9 cut(s)	152, 464, 469, 706, 785, 935, 1423, 1450, 1531
Hin6I	GCGC	4 cut(s)	309, 554, 726, 914
HinP1I	GCGC	4 cut(s)	309, 554, 726, 914
HincII	GTYRAC	1 cut(s)	1069
HindII	GTYRAC	1 cut(s)	1069
HinfI	GANTC	2 cut(s)	884, 995
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	3 cut(s)	481, 691, 980
Hpy166II	GTNNAC	5 cut(s)	288, 396, 499, 1069, 1533
Hpy188I	TCNGA	6 cut(s)	427, 493, 859, 1048, 1230, 1357
Hpy188III	TCNNGA	5 cut(s)	232, 272, 1154, 1376, 1420
Hpy8I	GTNNAC	5 cut(s)	288, 396, 499, 1069, 1533
Hpy99I	CGWCG	3 cut(s)	266, 371, 427
HpyAV	CCTTC	6 cut(s)	86, 238, 577, 727, 1029, 1535
HpyCH4III	ACNGT	6 cut(s)	64, 928, 1011, 1066, 1409, 1493
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	7 cut(s)	120, 248, 358, 829, 1395, 1400, 1416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	734, 826
HpyF3I	CTNAG	5 cut(s)	624, 639, 886, 982, 1438
HpySE526I	ACGT	1 cut(s)	37
Hsp92I	GRCGYC	1 cut(s)	422
Hsp92II	CATG	9 cut(s)	152, 464, 469, 706, 785, 935, 1423, 1450, 1531
HspAI	GCGC	4 cut(s)	309, 554, 726, 914
Kzo9I	GATC	4 cut(s)	842, 900, 1132, 1156
LmnI	GCTCC	2 cut(s)	427, 435
Lsp1109I	GCAGC	3 cut(s)	199, 202, 923
LweI	GCATC	3 cut(s)	351, 1425, 1618
MabI	ACCWGGT	1 cut(s)	1147
MaeI	CTAG	3 cut(s)	11, 195, 821
MaeII	ACGT	1 cut(s)	37
MaeIII	GTNAC	4 cut(s)	592, 697, 1288, 1579
MalI	GATC	4 cut(s)	844, 902, 1134, 1158
MboI	GATC	4 cut(s)	842, 900, 1132, 1156
MboII	GAAGA	8 cut(s)	169, 583, 803, 1157, 1217, 1514, 1526, 1532
MfeI	CAATTG	1 cut(s)	1083
MflI	RGATCY	1 cut(s)	1132
MhlI	GDGCHC	2 cut(s)	386, 432
MlyI	GAGTC	1 cut(s)	878
MmeI	TCCRAC	2 cut(s)	405, 630
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	6 cut(s)	507, 660, 872, 1038, 1235, 1651
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	2 cut(s)	212, 484
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	6 cut(s)	434, 1073, 1149, 1174, 1283, 1563
MunI	CAATTG	1 cut(s)	1083
Mva1269I	GAATGC	1 cut(s)	342
MvaI	CCWGG	5 cut(s)	1073, 1149, 1174, 1283, 1563
MvnI	CGCG	3 cut(s)	309, 311, 556
MwoI	GCNNNNNNNGC	2 cut(s)	734, 826
NciI	CCSGG	1 cut(s)	434
NcoI	CCATGG	2 cut(s)	465, 702
NdeII	GATC	4 cut(s)	842, 900, 1132, 1156
NlaIII	CATG	9 cut(s)	152, 464, 469, 706, 785, 935, 1423, 1450, 1531
NlaIV	GGNNCC	3 cut(s)	16, 878, 1016
NmuCI	GTSAC	2 cut(s)	697, 1288
NsbI	TGCGCA	1 cut(s)	727
PaeR7I	CTCGAG	1 cut(s)	232
PagI	TCATGA	1 cut(s)	1419
PctI	GAATGC	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	995
PkrI	GCNGC	5 cut(s)	214, 217, 421, 913, 962
Ple19I	CGATCG	1 cut(s)	845
PleI	GAGTC	1 cut(s)	878
PpsI	GAGTC	1 cut(s)	878
PsiI	TTATAA	1 cut(s)	579
Psp124BI	GAGCTC	1 cut(s)	432
Psp6I	CCWGG	5 cut(s)	1071, 1147, 1172, 1281, 1561
PspFI	CCCAGC	2 cut(s)	480, 484
PspGI	CCWGG	5 cut(s)	1071, 1147, 1172, 1281, 1561
PspN4I	GGNNCC	3 cut(s)	16, 878, 1016
PspPI	GGNCC	1 cut(s)	1151
PstI	CTGCAG	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	1132
PvuI	CGATCG	1 cut(s)	845
PvuII	CAGCTG	2 cut(s)	212, 484
RsaI	GTAC	1 cut(s)	1572
RsaNI	GTAC	1 cut(s)	1571
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	6 cut(s)	507, 660, 872, 1038, 1235, 1651
SatI	GCNGC	5 cut(s)	213, 216, 420, 912, 961
Sau3AI	GATC	4 cut(s)	842, 900, 1132, 1156
Sau96I	GGNCC	1 cut(s)	1151
SchI	GAGTC	1 cut(s)	878
ScrFI	CCNGG	6 cut(s)	434, 1073, 1149, 1174, 1283, 1563
SduI	GDGCHC	2 cut(s)	386, 432
SexAI	ACCWGGT	1 cut(s)	1147
SfaNI	GCATC	3 cut(s)	351, 1425, 1618
SfcI	CTRYAG	1 cut(s)	356
Sfr274I	CTCGAG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	1151
SlaI	CTCGAG	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	3 cut(s)	137, 232, 413
SmoI	CTYRAG	3 cut(s)	137, 232, 413
SsiI	CCGC	6 cut(s)	95, 192, 419, 537, 961, 1370
SspI	AATATT	2 cut(s)	1463, 1478
SspMI	CTAG	3 cut(s)	11, 195, 821
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	6 cut(s)	432, 1071, 1147, 1172, 1281, 1561
StyI	CCWWGG	3 cut(s)	441, 465, 702
TaaI	ACNGT	6 cut(s)	64, 928, 1011, 1066, 1409, 1493
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	8 cut(s)	180, 233, 240, 261, 366, 841, 1159, 1616
TatI	WGTACW	1 cut(s)	1570
TauI	GCSGC	2 cut(s)	422, 963
TfiI	GAWTC	1 cut(s)	995
Tru1I	TTAA	6 cut(s)	507, 660, 872, 1038, 1235, 1651
Tru9I	TTAA	6 cut(s)	507, 660, 872, 1038, 1235, 1651
TscAI	CASTG	3 cut(s)	111, 1016, 1609
TseFI	GTSAC	2 cut(s)	697, 1288
TseI	GCWGC	3 cut(s)	212, 215, 911
Tsp45I	GTSAC	2 cut(s)	697, 1288
TspDTI	ATGAA	9 cut(s)	449, 698, 920, 1008, 1467, 1488, 1515, 1527, 1554
TspRI	CASTG	3 cut(s)	111, 1016, 1609
VpaK11BI	GGWCC	1 cut(s)	1151
XapI	RAATTY	3 cut(s)	267, 601, 1161
XhoI	CTCGAG	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	3 cut(s)	11, 195, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.