Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002509

Physical Location & Seq

Genomic Coordinates Forward (+)

16624257 .. 16625897

Gene Structure 1641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTTGATTGTTGATGAGAACCTGACACAGCCGAATGATGAACTGGCTTTCAATATAACCAATGAACCTACGATCACCAATAGTAACACTGATCCGGCAGAGAAGCCATTAGTGGAACCATGGAAGGAACAAATTGGTGCCGGAAATGGTTCTCCTTCACAAGAGAATGTGACCCCTAAATGGCCAAATGCATATGTGGAATCATATGAGGAACCAGTTGCTGCAAGAGCTGCAGTGCTTAATGAAGAGAGAGTTATTTTTCCGAGCGAGGATTGTGCAGCCATCTCAAGTAAGGAGTTGTTGGTGGCAGACAACATTTTCGGAAATAATGGTGGAGCTGCAACAGTAATGAACCTTTCAAGCACTCAAATCGAGGGAAGTCTAATTAACTACGAAGAAGGTCCTGTTCTGGTACCTGGGCTGACTCCTTCACCACCTGTTCCAACTGAAGAAGCGAACAAAGAGGGCATCGACAAACAGATGTCTTTTGATGGTTCGGTTGGAGCCTTTGAAGCTAAGGATCGTAATATGCCAGAGCTAGAAGAGAAGCAAGAACAGTACAGTGACCTACCTCAAGAAGTAACTAATGTAATGATCAACGCTAATGAGGAGAATTTTGACGATGAAATCAAGCAAACGCCTCACCCTGCAAATAAGGAAGAACAGTTCCACACAGAGCCAGTCAATGATAAGGTCTTGTGCAATGACCAACCTCAAGTGGAAACAGCTGCCGCAATCAATGATAACGAAGAGAATTCTGCTAAAAAGGAAGAACATTCCGACTCAGAGCCAATCAACGAGGTCTTGCACAATGATATGCAATGGGGTCGTAAGATGCTGCAGAACCTTCTGTCTAACTTCAGATTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20

Protein Analysis

291

Amino Acids

32.12

Weight (kDa)

4.19

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01260 AT5G01260 AT5G01260
fragaria_vesca	FvH4_3g38430 FvH4_6g11650 FvH4_6g11650 FvH4_6g11650
malus_domestica	MD04G1150500.v1.1 MD12G1164600.v1.1
prunus_persica	Prupe.6G058700_v2.0.a1 Prupe.6G275300_v2.0.a1 Prupe.6G275300_v2.0.a1
pyrus_communis	pycom04g13610 pycom04g13620 pycom11g06380 pycom12g15750
rosa_chinensis	RchiOBHm_Chr3g0463311
rosa_laevigata	RLG00000024791 RLG00000036036
rosa_multiflora	Rmu_co8319585.1_g000001 Rmu_sc0000853.1_g000034 Rmu_sc0000923.1_g000002 Rmu_sc0040359.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011670 Rroxscaffold_6G00416670
rosa_rugosa	Rorug03G0063800 Rorug03G0063900 Rorug03G0064000 Rorug03G0064100 Rorug05G0396200
rosa_samantha	Rh3AG121700 Rh3BG126200 Rh3CG128100 Rh3DG127300 Rh5AG452900 Rh5BG471900 Rh5CG494300 Rh5DG484400
rosa_wichuraiana	Rw0G006070 Rw3G010340 Rw5G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	412
AccB1I	GGYRCC	2 cut(s)	137, 412
AciI	CCGC	1 cut(s)	732
AclWI	GGATC	2 cut(s)	86, 528
AcoI	YGGCCR	1 cut(s)	182
AcsI	RAATTY	2 cut(s)	613, 754
AcuI	CTGAAG	2 cut(s)	468, 844
AfaI	GTAC	2 cut(s)	414, 560
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	3 cut(s)	52, 360, 512
AjnI	CCWGG	1 cut(s)	415
AloI	GAACNNNNNNTCC	2 cut(s)	650, 682
AluBI	AGCT	5 cut(s)	230, 338, 515, 538, 728
AluI	AGCT	5 cut(s)	230, 338, 515, 538, 728
AlwI	GGATC	2 cut(s)	86, 528
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	6 cut(s)	221, 230, 278, 338, 728, 838
ApoI	RAATTY	2 cut(s)	613, 754
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
Asp700I	GAANNNNTTC	1 cut(s)	148
Asp718I	GGTACC	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	3 cut(s)	67, 423, 635
AvaII	GGWCC	1 cut(s)	401
BalI	TGGCCA	1 cut(s)	184
BanI	GGYRCC	2 cut(s)	137, 412
BbvI	GCAGC	6 cut(s)	208, 217, 290, 325, 715, 825
BccI	CCATC	2 cut(s)	290, 485
BcgI	CGANNNNNNTGC	6 cut(s)	257, 291, 352, 386, 809, 843
BciT130I	CCWGG	1 cut(s)	417
BclI	TGATCA	1 cut(s)	594
BfaI	CTAG	1 cut(s)	539
BfmI	CTRYAG	3 cut(s)	231, 839, 869
BisI	GCNGC	7 cut(s)	222, 231, 279, 339, 729, 732, 839
BlsI	GCNGC	7 cut(s)	223, 232, 280, 340, 730, 733, 840
Bme1390I	CCNGG	1 cut(s)	417
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	5 cut(s)	117, 139, 213, 414, 505
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	2 cut(s)	477, 825
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	3 cut(s)	271, 558, 699
BsaJI	CCNNGG	2 cut(s)	119, 416
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse1I	ACTGG	3 cut(s)	48, 215, 680
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	119, 416
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMI	GCAATG	2 cut(s)	709, 827
BseMII	CTCAG	1 cut(s)	798
BseNI	ACTGG	3 cut(s)	48, 215, 680
BseRI	GAGGAG	1 cut(s)	623
BseXI	GCAGC	6 cut(s)	208, 217, 290, 325, 715, 825
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	184
BshNI	GGYRCC	2 cut(s)	137, 412
BsiSI	CCGG	2 cut(s)	95, 141
BslI	CCNNNNNNNGG	1 cut(s)	180
BsnI	GGCC	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	72, 91, 520, 594
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	1 cut(s)	732
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	797
BspLI	GGNNCC	5 cut(s)	117, 139, 213, 414, 505
BspMAI	CTGCAG	2 cut(s)	235, 843
BspPI	GGATC	2 cut(s)	86, 528
BspT107I	GGYRCC	2 cut(s)	137, 412
BsrDI	GCAATG	2 cut(s)	709, 827
BsrI	ACTGG	3 cut(s)	48, 215, 680
BssECI	CCNNGG	2 cut(s)	119, 416
BssMI	GATC	4 cut(s)	72, 91, 520, 594
BssT1I	CCWWGG	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	4 cut(s)	346, 558, 563, 666
Bst6I	CTCTTC	3 cut(s)	240, 537, 744
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	516, 784
BstDSI	CCRYGG	1 cut(s)	119
BstKTI	GATC	4 cut(s)	75, 94, 523, 597
BstMBI	GATC	4 cut(s)	72, 91, 520, 594
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 230, 512
BstNI	CCWGG	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	415
BstSFI	CTRYAG	3 cut(s)	231, 839, 869
BstV1I	GCAGC	6 cut(s)	208, 217, 290, 325, 715, 825
BsuRI	GGCC	1 cut(s)	184
BtgI	CCRYGG	1 cut(s)	119
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	3 cut(s)	87, 240, 568
CaiI	CAGNNNCTG	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	401
Csp6I	GTAC	2 cut(s)	413, 559
CviAII	CATG	1 cut(s)	120
CviQI	GTAC	2 cut(s)	413, 559
DdeI	CTNAG	2 cut(s)	516, 784
DpnI	GATC	4 cut(s)	74, 93, 522, 596
DpnII	GATC	4 cut(s)	72, 91, 520, 594
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	3 cut(s)	240, 537, 744
EarI	CTCTTC	3 cut(s)	240, 537, 744
Eco130I	CCWWGG	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	2 cut(s)	468, 844
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRI	GAATTC	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	119
EcoT22I	ATGCAT	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	1 cut(s)	123
FaiI	YATR	9 cut(s)	56, 121, 193, 195, 205, 207, 530, 818, 871
FatI	CATG	1 cut(s)	119
FauNDI	CATATG	2 cut(s)	193, 205
FbaI	TGATCA	1 cut(s)	594
Fnu4HI	GCNGC	7 cut(s)	222, 231, 279, 339, 729, 732, 839
Fsp4HI	GCNGC	7 cut(s)	222, 231, 279, 339, 729, 732, 839
FspBI	CTAG	1 cut(s)	539
GluI	GCNGC	7 cut(s)	222, 231, 279, 339, 729, 732, 839
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	2 cut(s)	95, 141
Hin1II	CATG	1 cut(s)	123
HinfI	GANTC	3 cut(s)	200, 424, 782
HpaII	CCGG	2 cut(s)	95, 141
HphI	GGTGA	3 cut(s)	67, 423, 635
Hpy188I	TCNGA	5 cut(s)	264, 323, 781, 787, 863
Hpy188III	TCNNGA	1 cut(s)	575
HpyAV	CCTTC	5 cut(s)	118, 165, 392, 438, 857
HpyCH4III	ACNGT	4 cut(s)	346, 558, 563, 666
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 230, 512
HpyF3I	CTNAG	2 cut(s)	516, 784
Hsp92II	CATG	1 cut(s)	123
KpnI	GGTACC	1 cut(s)	416
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	4 cut(s)	72, 91, 520, 594
LmnI	GCTCC	2 cut(s)	335, 503
Lsp1109I	GCAGC	6 cut(s)	208, 217, 290, 325, 715, 825
LweI	GCATC	2 cut(s)	477, 825
MaeI	CTAG	1 cut(s)	539
MaeIII	GTNAC	4 cut(s)	83, 169, 563, 580
MalI	GATC	4 cut(s)	74, 93, 522, 596
MboI	GATC	4 cut(s)	72, 91, 520, 594
MboII	GAAGA	7 cut(s)	257, 407, 461, 554, 671, 761, 782
MlsI	TGGCCA	1 cut(s)	184
MluCI	AATT	4 cut(s)	132, 384, 613, 754
MluNI	TGGCCA	1 cut(s)	184
MlyI	GAGTC	2 cut(s)	418, 776
MmeI	TCCRAC	3 cut(s)	467, 481, 804
MnlI	CCTC	9 cut(s)	202, 262, 367, 457, 582, 601, 651, 723, 793
Mox20I	TGGCCA	1 cut(s)	184
Mph1103I	ATGCAT	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	148
MscI	TGGCCA	1 cut(s)	184
MseI	TTAA	2 cut(s)	240, 387
Msp20I	TGGCCA	1 cut(s)	184
MspA1I	CMGCKG	1 cut(s)	728
MspI	CCGG	2 cut(s)	95, 141
MspR9I	CCNGG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	3 cut(s)	227, 230, 512
NcoI	CCATGG	1 cut(s)	119
NdeI	CATATG	2 cut(s)	193, 205
NdeII	GATC	4 cut(s)	72, 91, 520, 594
NlaIII	CATG	1 cut(s)	123
NlaIV	GGNNCC	5 cut(s)	117, 139, 213, 414, 505
NmuCI	GTSAC	2 cut(s)	169, 563
NsiI	ATGCAT	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	7 cut(s)	223, 232, 280, 340, 730, 733, 840
PleI	GAGTC	2 cut(s)	418, 776
PpsI	GAGTC	2 cut(s)	418, 776
PpuMI	RGGWCCY	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	5 cut(s)	117, 139, 213, 414, 505
PspPI	GGNCC	1 cut(s)	401
PspPPI	RGGWCCY	1 cut(s)	401
PstI	CTGCAG	2 cut(s)	235, 843
PstNI	CAGNNNCTG	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	2 cut(s)	414, 560
RsaNI	GTAC	2 cut(s)	413, 559
SaqAI	TTAA	2 cut(s)	240, 387
SatI	GCNGC	7 cut(s)	222, 231, 279, 339, 729, 732, 839
Sau3AI	GATC	4 cut(s)	72, 91, 520, 594
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	2 cut(s)	418, 776
ScrFI	CCNGG	1 cut(s)	417
SfaNI	GCATC	2 cut(s)	477, 825
SfcI	CTRYAG	3 cut(s)	231, 839, 869
SinI	GGWCC	1 cut(s)	401
SmlI	CTYRAG	3 cut(s)	286, 573, 714
SmoI	CTYRAG	3 cut(s)	286, 573, 714
Sse9I	AATT	4 cut(s)	132, 384, 613, 754
SsiI	CCGC	1 cut(s)	732
SspMI	CTAG	1 cut(s)	539
StyD4I	CCNGG	1 cut(s)	415
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	4 cut(s)	346, 558, 563, 666
TaqI	TCGA	2 cut(s)	372, 471
TasI	AATT	4 cut(s)	132, 384, 613, 754
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	1 cut(s)	734
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	240, 387
Tru9I	TTAA	2 cut(s)	240, 387
TscAI	CASTG	3 cut(s)	94, 240, 568
TseFI	GTSAC	2 cut(s)	169, 563
TseI	GCWGC	6 cut(s)	221, 230, 278, 338, 728, 838
Tsp45I	GTSAC	2 cut(s)	169, 563
TspDTI	ATGAA	5 cut(s)	54, 78, 258, 365, 639
TspRI	CASTG	3 cut(s)	94, 240, 568
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	2 cut(s)	613, 754
XmnI	GAANNNNTTC	1 cut(s)	148
XspI	CTAG	1 cut(s)	539
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.