Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002509

Physical Location & Seq

Genomic Coordinates Reverse (-)

4874973 .. 4876054

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g06380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGACAGCTTTGGGGAGGGCAATGGTGGTGGTGGTGGTGGTTATGGTGGCGGCAGTAGTGATGGCAGCGACAGGTTGGGGGTATGATGGTGGTGCCAATAGTGGGGGTGATGTTCCTACTGGCATAGCAATCCAATACAAGTTTATACTGAAAAAAGCCACAGGAGATGTGTTGTGGCAACCCGGTCCAGATCGGACTCTGCACACCTGGAGTACGAATAACACAATATCCATTGATGAAGACTGGATCGACTATGAACTTCAGAAGATAAGCGAAGTGCAAATTACAAATGAAAACGAGGCATTACTTGTAAACCTCGACGTGGGACCGATCATTCCCGGGAATGTTACCCATCCTGAAGATCAAGAACTTCTGTTGAATGCGAACAAGGGTGCAAATTTTACAGATAAACCTGCCTCGGTGGATGAAAAACCACCATTTAACAGCAACAACGCGGTCGTAATTGAAGAGAAGACTATCAAATCAGCAGATGGAACTTTGCTCGGTATAAGGAAGGAAGTACGCGTTTTAGACTATGGTGGTAGCGCCGCGAAAGAGGAATCTATAAAAAAGTCAACCCCGACAACCTCAACGAGAAAGATTTCTGAAAGTCCGAAAGATGAAGAAGATGAAGCCTTGCCTACTTATGAAATCAGTCCTGTTCTAGTGCCTAGTTTAACTGCAATGCAAGCGGTGTCATATGAGGAAGCAATACTGCCCAAAGGACTTGGAACACCACTACCTTCTAAAGAATCACCACCCATAGAGCTAGGAAAATCCATATCTCCTGCAGAAGCAACATCCAATGATCTTGGAAAATCGATGAATTCTAACGAACTTGGAATACCAATGTCTTCTGAAGCAGCACTGAAATTTGATGCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20

Protein Analysis

296

Amino Acids

31.5

Weight (kDa)

4.56

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01260 AT5G01260 AT5G01260
fragaria_vesca	FvH4_3g38430 FvH4_6g11650 FvH4_6g11650 FvH4_6g11650
malus_domestica	MD04G1150500.v1.1 MD12G1164600.v1.1
prunus_persica	Prupe.6G058700_v2.0.a1 Prupe.6G275300_v2.0.a1 Prupe.6G275300_v2.0.a1
pyrus_communis	pycom04g13610 pycom04g13620 pycom11g06380 pycom12g15750
rosa_chinensis	RchiOBHm_Chr3g0463311
rosa_laevigata	RLG00000024791 RLG00000036036
rosa_multiflora	Rmu_co8319585.1_g000001 Rmu_sc0000853.1_g000034 Rmu_sc0000923.1_g000002 Rmu_sc0040359.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011670 Rroxscaffold_6G00416670
rosa_rugosa	Rorug03G0063800 Rorug03G0063900 Rorug03G0064000 Rorug03G0064100 Rorug05G0396200
rosa_samantha	Rh3AG121700 Rh3BG126200 Rh3CG128100 Rh3DG127300 Rh5AG452900 Rh5BG471900 Rh5CG494300 Rh5DG484400
rosa_wichuraiana	Rw0G006070 Rw3G010340 Rw5G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	421
AccB1I	GGYRCC	1 cut(s)	92
AccII	CGCG	3 cut(s)	455, 525, 551
AciI	CCGC	4 cut(s)	50, 455, 549, 692
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	3 cut(s)	397, 826, 872
AcuI	CTGAAG	3 cut(s)	245, 378, 879
AfaI	GTAC	2 cut(s)	214, 522
AfiI	CCNNNNNNNGG	2 cut(s)	102, 322
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	2 cut(s)	379, 467
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	2 cut(s)	8, 769
AluI	AGCT	2 cut(s)	8, 769
AlwI	GGATC	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	338
ApeKI	GCWGC	2 cut(s)	65, 863
ApoI	RAATTY	3 cut(s)	397, 826, 872
Asp700I	GAANNNNTTC	1 cut(s)	601
AspLEI	GCGC	1 cut(s)	548
AspS9I	GGNCC	2 cut(s)	185, 326
AsuC2I	CCSGG	3 cut(s)	183, 339, 340
AsuHPI	GGTGA	2 cut(s)	119, 747
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	185, 326
BanI	GGYRCC	1 cut(s)	92
BbsI	GAAGAC	3 cut(s)	246, 479, 846
BbvI	GCAGC	2 cut(s)	77, 875
BccI	CCATC	4 cut(s)	55, 80, 360, 485
BciT130I	CCWGG	1 cut(s)	208
BcnI	CCSGG	3 cut(s)	183, 339, 340
BfaI	CTAG	3 cut(s)	665, 672, 770
BfmI	CTRYAG	1 cut(s)	789
BfoI	RGCGCY	1 cut(s)	549
BfuAI	ACCTGC	1 cut(s)	421
BisI	GCNGC	4 cut(s)	51, 66, 549, 864
BlsI	GCNGC	4 cut(s)	52, 67, 550, 865
Bme1390I	CCNGG	4 cut(s)	183, 208, 339, 340
Bme18I	GGWCC	2 cut(s)	185, 326
BmeT110I	CYCGRG	1 cut(s)	338
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	185, 326
BmiI	GGNNCC	2 cut(s)	94, 327
BmrFI	CCNGG	4 cut(s)	183, 208, 339, 340
BmsI	GCATC	1 cut(s)	868
BpiI	GAAGAC	3 cut(s)	246, 479, 846
BpmI	CTGGAG	1 cut(s)	229
BpuMI	CCSGG	3 cut(s)	183, 339, 340
Bsa29I	ATCGAT	1 cut(s)	821
BsaJI	CCNNGG	2 cut(s)	338, 417
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 322
Bse1I	ACTGG	2 cut(s)	124, 248
Bse3DI	GCAATG	2 cut(s)	27, 690
BseBI	CCWGG	1 cut(s)	208
BseCI	ATCGAT	1 cut(s)	821
BseDI	CCNNGG	2 cut(s)	338, 417
BseGI	GGATG	3 cut(s)	352, 430, 800
BseLI	CCNNNNNNNGG	2 cut(s)	102, 322
BseMI	GCAATG	2 cut(s)	27, 690
BseNI	ACTGG	2 cut(s)	124, 248
BseXI	GCAGC	2 cut(s)	77, 875
BsgI	GTGCAG	1 cut(s)	185
Bsh1236I	CGCG	3 cut(s)	455, 525, 551
Bsh1285I	CGRYCG	1 cut(s)	459
BshNI	GGYRCC	1 cut(s)	92
BshVI	ATCGAT	1 cut(s)	821
BsiEI	CGRYCG	1 cut(s)	459
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	183, 339
BslFI	GGGAC	1 cut(s)	339
BslI	CCNNNNNNNGG	2 cut(s)	102, 322
BsmFI	GGGAC	1 cut(s)	339
BsmI	GAATGC	1 cut(s)	385
BsoBI	CYCGRG	1 cut(s)	338
Bsp143I	GATC	5 cut(s)	190, 246, 330, 361, 808
BspACI	CCGC	4 cut(s)	50, 455, 549, 692
BspDI	ATCGAT	1 cut(s)	821
BspFNI	CGCG	3 cut(s)	455, 525, 551
BspLI	GGNNCC	2 cut(s)	94, 327
BspMAI	CTGCAG	1 cut(s)	793
BspMI	ACCTGC	1 cut(s)	421
BspPI	GGATC	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	92
BsrDI	GCAATG	2 cut(s)	27, 690
BsrI	ACTGG	2 cut(s)	124, 248
BssECI	CCNNGG	2 cut(s)	338, 417
BssMI	GATC	5 cut(s)	190, 246, 330, 361, 808
Bst2UI	CCWGG	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	690
BstF5I	GGATG	3 cut(s)	352, 430, 800
BstFNI	CGCG	3 cut(s)	455, 525, 551
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	5 cut(s)	193, 249, 333, 364, 811
BstMBI	GATC	5 cut(s)	190, 246, 330, 361, 808
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	1 cut(s)	689
BstNI	CCWGG	1 cut(s)	208
BstSCI	CCNGG	4 cut(s)	181, 206, 337, 338
BstSFI	CTRYAG	1 cut(s)	789
BstUI	CGCG	3 cut(s)	455, 525, 551
BstV1I	GCAGC	2 cut(s)	77, 875
BstV2I	GAAGAC	3 cut(s)	246, 479, 846
Bsu15I	ATCGAT	1 cut(s)	821
BsuTUI	ATCGAT	1 cut(s)	821
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	3 cut(s)	352, 430, 800
BtsIMutI	CAGTG	1 cut(s)	866
BveI	ACCTGC	1 cut(s)	421
Cac8I	GCNNGC	1 cut(s)	690
CfoI	GCGC	1 cut(s)	548
Cfr13I	GGNCC	2 cut(s)	185, 326
Cfr9I	CCCGGG	1 cut(s)	338
ClaI	ATCGAT	1 cut(s)	821
Csp6I	GTAC	2 cut(s)	213, 521
CspCI	CAANNNNNGTGG	2 cut(s)	9, 44
CviJI	RGCY	4 cut(s)	8, 158, 635, 769
CviKI_1	RGCY	4 cut(s)	8, 158, 635, 769
CviQI	GTAC	2 cut(s)	213, 521
DpnI	GATC	5 cut(s)	192, 248, 332, 363, 810
DpnII	GATC	5 cut(s)	190, 246, 330, 361, 808
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco47I	GGWCC	2 cut(s)	185, 326
Eco57I	CTGAAG	3 cut(s)	245, 378, 879
Eco88I	CYCGRG	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	826
EcoRII	CCWGG	1 cut(s)	206
FaqI	GGGAC	1 cut(s)	339
FauNDI	CATATG	1 cut(s)	700
Fnu4HI	GCNGC	4 cut(s)	51, 66, 549, 864
FokI	GGATG	3 cut(s)	339, 437, 787
Fsp4HI	GCNGC	4 cut(s)	51, 66, 549, 864
FspBI	CTAG	3 cut(s)	665, 672, 770
GlaI	GCGC	1 cut(s)	547
GluI	GCNGC	4 cut(s)	51, 66, 549, 864
GsuI	CTGGAG	1 cut(s)	229
HaeII	RGCGCY	1 cut(s)	549
HapII	CCGG	2 cut(s)	183, 339
HhaI	GCGC	1 cut(s)	548
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HinfI	GANTC	3 cut(s)	196, 560, 752
HpaII	CCGG	2 cut(s)	183, 339
HphI	GGTGA	2 cut(s)	119, 747
Hpy166II	GTNNAC	2 cut(s)	313, 576
Hpy188I	TCNGA	6 cut(s)	195, 264, 607, 615, 859, 887
Hpy188III	TCNNGA	3 cut(s)	188, 356, 365
Hpy8I	GTNNAC	2 cut(s)	313, 576
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	2 cut(s)	508, 753
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	6 cut(s)	202, 280, 395, 683, 688, 791
HpyF10VI	GCNNNNNNNGC	1 cut(s)	689
HpySE526I	ACGT	1 cut(s)	321
HspAI	GCGC	1 cut(s)	546
Kzo9I	GATC	5 cut(s)	190, 246, 330, 361, 808
Lsp1109I	GCAGC	2 cut(s)	77, 875
LweI	GCATC	1 cut(s)	868
MaeI	CTAG	3 cut(s)	665, 672, 770
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	5 cut(s)	192, 248, 332, 363, 810
MboI	GATC	5 cut(s)	190, 246, 330, 361, 808
MboII	GAAGA	8 cut(s)	251, 277, 371, 479, 484, 635, 638, 846
MluCI	AATT	5 cut(s)	282, 397, 462, 826, 872
MluI	ACGCGT	1 cut(s)	523
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	7 cut(s)	9, 292, 326, 427, 550, 598, 697
MroXI	GAANNNNTTC	1 cut(s)	601
MseI	TTAA	2 cut(s)	441, 677
MspI	CCGG	2 cut(s)	183, 339
MspR9I	CCNGG	4 cut(s)	183, 208, 339, 340
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	208
MvnI	CGCG	3 cut(s)	455, 525, 551
MwoI	GCNNNNNNNGC	1 cut(s)	689
NciI	CCSGG	3 cut(s)	183, 339, 340
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	5 cut(s)	190, 246, 330, 361, 808
NlaIV	GGNNCC	2 cut(s)	94, 327
PctI	GAATGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	601
PfeI	GAWTC	2 cut(s)	560, 752
PkrI	GCNGC	4 cut(s)	52, 67, 550, 865
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	2 cut(s)	94, 327
PspPI	GGNCC	2 cut(s)	185, 326
PsrI	GAACNNNNNNTAC	2 cut(s)	828, 860
PstI	CTGCAG	1 cut(s)	793
RsaI	GTAC	2 cut(s)	214, 522
RsaNI	GTAC	2 cut(s)	213, 521
SaqAI	TTAA	2 cut(s)	441, 677
SatI	GCNGC	4 cut(s)	51, 66, 549, 864
Sau3AI	GATC	5 cut(s)	190, 246, 330, 361, 808
Sau96I	GGNCC	2 cut(s)	185, 326
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	4 cut(s)	183, 208, 339, 340
SetI	ASST	9 cut(s)	10, 76, 209, 318, 324, 415, 590, 745, 771
SfaNI	GCATC	1 cut(s)	868
SfcI	CTRYAG	1 cut(s)	789
SinI	GGWCC	2 cut(s)	185, 326
SmaI	CCCGGG	1 cut(s)	340
Sse9I	AATT	5 cut(s)	282, 397, 462, 826, 872
SsiI	CCGC	4 cut(s)	50, 455, 549, 692
SspMI	CTAG	3 cut(s)	665, 672, 770
StyD4I	CCNGG	4 cut(s)	181, 206, 337, 338
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	3 cut(s)	249, 318, 821
TaqII	GACCGA	1 cut(s)	343
TasI	AATT	5 cut(s)	282, 397, 462, 826, 872
TauI	GCSGC	2 cut(s)	53, 551
TfiI	GAWTC	2 cut(s)	560, 752
Tru1I	TTAA	2 cut(s)	441, 677
Tru9I	TTAA	2 cut(s)	441, 677
TscAI	CASTG	1 cut(s)	873
TseI	GCWGC	2 cut(s)	65, 863
TspDTI	ATGAA	8 cut(s)	252, 270, 306, 441, 636, 645, 663, 839
TspMI	CCCGGG	1 cut(s)	338
TspRI	CASTG	1 cut(s)	873
VpaK11BI	GGWCC	2 cut(s)	185, 326
XapI	RAATTY	3 cut(s)	397, 826, 872
XmaI	CCCGGG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	601
XspI	CTAG	3 cut(s)	665, 672, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.