Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002509

Physical Location & Seq

Genomic Coordinates Forward (+)

18195755 .. 18197673

Gene Structure 1919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15750.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAGAACCCTGTCGAGTCCGAGTTCGAGGGTGGCGGTAGAAAAGAAGTGGGTGGGCAGAGAAAATGTCTTTCCCCGCGAGCTGGAACCTTGTTTCCTCAGGCCAAAGAGAAGTGGGAATCTTCGGTTCTTGAATTTGGTGTGTTTTCTGAAACAGAGCAAGCCCGTGATCAGACCGATCATTTGCCTCTCGTCAAAAACCCAGACAGAATTGGAGATTGCAGATTCCCAAATTCAGGAAACACATCATACAAAAACTATTCATGTGAAATTCCAGTTGCAGAAGGAGTGCTCGTTTGGGCAGGAGTTCCTCATTGTAGGGGATGATCCTATGTTCGGTTTGTGGGATCCTGCAAGCGCAATACCGATGATCTGGTCAAATGGGAATGTGTGGACTGTTGAGCTGGATATACCGGTTGGGAAATCGATTCAGTTCAAGTTCATACTAAAAGAAAGCAGAGGGAATATCTCGTGGCAGCCTGGCCCTGATCGGATTTTCCAGACCTGGGAAACTAAGAACAGGATCACTGTTTCTGAAGATTGGGCAGATGCTGAGCTTCAGAAAATAATAGAGATCGATCGGGTTTCAAATCAAAGTGATGGTTCAAATGTTAACACTGATATGTTGATTATGGATGAGAACCTGACACAGCCGAATGGCGAACTGGCCTTCAATACAACCAATGAACCTAAAATCACCAATAGTAACACTGATTTGGCAGAGAAACCATCAGTAGAACCAAGGAAGGAACGAATTGGTGCTGATAATGGTTCTCCTTCACAAGAGAATATGACCCCTAAATGGCCAAAGGCATACGTGGAACCATATGAGGAACGAGTTGCTGCAAGAACTGCAGTGCTTAATGAAGAGAGAGTTATTTTTCCAAGCGAGGATTCTGCAGCCATCTCAAGTAAGGAGTTGTTGGTGGCAGACAACATTTTCGGAAATAATGGTAGAGCTGCAACAGTAATGAACCTTTCGAGCACTCACATCGAGGGAAGCCTAGTTAACCTTGAAGAAGATCCTGTTCTGATACCTGGGCTGACTCCTTCACCAGCTGTTCCAAATGAAGAAGCGAACAAAGAGGGAATCGAGAAACAGATGTCTTTTGATGGCTCGGTTGGAGCCTTTGAAGCTAAGGATCGCACTATGCCAGAGGTAACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20

Protein Analysis

390

Amino Acids

43.51

Weight (kDa)

4.95

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01260 AT5G01260 AT5G01260
fragaria_vesca	FvH4_3g38430 FvH4_6g11650 FvH4_6g11650 FvH4_6g11650
malus_domestica	MD04G1150500.v1.1 MD12G1164600.v1.1
prunus_persica	Prupe.6G058700_v2.0.a1 Prupe.6G275300_v2.0.a1 Prupe.6G275300_v2.0.a1
pyrus_communis	pycom04g13610 pycom04g13620 pycom11g06380 pycom12g15750
rosa_chinensis	RchiOBHm_Chr3g0463311
rosa_laevigata	RLG00000024791 RLG00000036036
rosa_multiflora	Rmu_co8319585.1_g000001 Rmu_sc0000853.1_g000034 Rmu_sc0000923.1_g000002 Rmu_sc0040359.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011670 Rroxscaffold_6G00416670
rosa_rugosa	Rorug03G0063800 Rorug03G0063900 Rorug03G0064000 Rorug03G0064100 Rorug05G0396200
rosa_samantha	Rh3AG121700 Rh3BG126200 Rh3CG128100 Rh3DG127300 Rh5AG452900 Rh5BG471900 Rh5CG494300 Rh5DG484400
rosa_wichuraiana	Rw0G006070 Rw3G010340 Rw5G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	78
AciI	CCGC	2 cut(s)	35, 76
AclWI	GGATC	6 cut(s)	320, 341, 354, 530, 1016, 1149
AcoI	YGGCCR	1 cut(s)	803
AcsI	RAATTY	3 cut(s)	133, 231, 269
AcuI	CTGAAG	2 cut(s)	542, 555
AfiI	CCNNNNNNNGG	5 cut(s)	82, 235, 335, 505, 801
AgeI	ACCGGT	1 cut(s)	412
AgsI	TTSAA	7 cut(s)	133, 436, 588, 606, 673, 1016, 1133
AjnI	CCWGG	3 cut(s)	478, 503, 1036
AjuI	GAANNNNNNNTTGG	2 cut(s)	877, 909
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
AluBI	AGCT	6 cut(s)	82, 403, 556, 959, 1058, 1136
AluI	AGCT	6 cut(s)	82, 403, 556, 959, 1058, 1136
Alw21I	GWGCWC	2 cut(s)	293, 986
AlwI	GGATC	6 cut(s)	320, 341, 354, 530, 1016, 1149
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	4 cut(s)	101, 481, 666, 803
ApeKI	GCWGC	4 cut(s)	475, 842, 899, 959
ApoI	RAATTY	3 cut(s)	133, 231, 269
ArsI	GACNNNNNNTTYG	4 cut(s)	165, 197, 923, 955
AsiGI	ACCGGT	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	2 cut(s)	688, 1044
AxyI	CCTNAGG	1 cut(s)	98
BalI	TGGCCA	1 cut(s)	805
BamHI	GGATCC	1 cut(s)	346
BauI	CACGAG	1 cut(s)	469
Bbv12I	GWGCWC	2 cut(s)	293, 986
BbvI	GCAGC	4 cut(s)	487, 829, 911, 946
BccI	CCATC	4 cut(s)	593, 736, 911, 1106
BcgI	CGANNNNNNTGC	4 cut(s)	878, 912, 973, 1007
BciT130I	CCWGG	3 cut(s)	480, 505, 1038
BclI	TGATCA	1 cut(s)	168
BfaI	CTAG	1 cut(s)	1004
BfmI	CTRYAG	2 cut(s)	852, 897
BisI	GCNGC	4 cut(s)	476, 843, 900, 960
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	4 cut(s)	477, 844, 901, 961
Bme1390I	CCNGG	3 cut(s)	480, 505, 1038
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	4 cut(s)	87, 348, 822, 1126
BmrFI	CCNGG	3 cut(s)	480, 505, 1038
BmsI	GCATC	1 cut(s)	538
Bpu10I	CCTNAGC	1 cut(s)	1137
Bpu1102I	GCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	1 cut(s)	892
Bsa29I	ATCGAT	2 cut(s)	425, 576
BsaAI	YACGTR	1 cut(s)	817
BsaJI	CCNNGG	3 cut(s)	504, 740, 1037
BsaWI	WCCGGW	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 235, 335, 505, 801
Bse118I	RCCGGY	1 cut(s)	412
Bse1I	ACTGG	2 cut(s)	274, 669
Bse21I	CCTNAGG	1 cut(s)	98
BseBI	CCWGG	3 cut(s)	480, 505, 1038
BseCI	ATCGAT	2 cut(s)	425, 576
BseDI	CCNNGG	3 cut(s)	504, 740, 1037
BseGI	GGATG	2 cut(s)	328, 640
BseLI	CCNNNNNNNGG	5 cut(s)	82, 235, 335, 505, 801
BseMII	CTCAG	2 cut(s)	112, 543
BseNI	ACTGG	2 cut(s)	274, 669
BseXI	GCAGC	4 cut(s)	487, 829, 911, 946
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	580
BshFI	GGCC	4 cut(s)	103, 483, 668, 805
BshTI	ACCGGT	1 cut(s)	412
BshVI	ATCGAT	2 cut(s)	425, 576
BsiEI	CGRYCG	1 cut(s)	580
BsiHKAI	GWGCWC	2 cut(s)	293, 986
BsiSI	CCGG	1 cut(s)	413
BslI	CCNNNNNNNGG	5 cut(s)	82, 235, 335, 505, 801
BsnI	GGCC	4 cut(s)	103, 483, 668, 805
Bsp1286I	GDGCHC	2 cut(s)	293, 986
Bsp1720I	GCTNAGC	1 cut(s)	552
BspACI	CCGC	2 cut(s)	35, 76
BspANI	GGCC	4 cut(s)	103, 483, 668, 805
BspCNI	CTCAG	2 cut(s)	111, 544
BspDI	ATCGAT	2 cut(s)	425, 576
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	4 cut(s)	87, 348, 822, 1126
BspMAI	CTGCAG	2 cut(s)	856, 901
BspPI	GGATC	6 cut(s)	320, 341, 354, 530, 1016, 1149
BsrFI	RCCGGY	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	274, 669
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	3 cut(s)	504, 740, 1037
BssSI	CACGAG	1 cut(s)	469
BssT1I	CCWWGG	1 cut(s)	740
Bst2BI	CACGAG	1 cut(s)	469
Bst2UI	CCWGG	3 cut(s)	480, 505, 1038
Bst4CI	ACNGT	3 cut(s)	397, 529, 967
Bst6I	CTCTTC	1 cut(s)	861
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstBAI	YACGTR	1 cut(s)	817
BstC8I	GCNNGC	3 cut(s)	80, 161, 355
BstDEI	CTNAG	4 cut(s)	98, 513, 552, 1137
BstF5I	GGATG	2 cut(s)	328, 640
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	359
BstMCI	CGRYCG	1 cut(s)	580
BstMWI	GCNNNNNNNGC	2 cut(s)	851, 1133
BstNI	CCWGG	3 cut(s)	480, 505, 1038
BstSCI	CCNGG	3 cut(s)	478, 503, 1036
BstSFI	CTRYAG	2 cut(s)	852, 897
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	4 cut(s)	487, 829, 911, 946
BstX2I	RGATCY	2 cut(s)	346, 1021
BstYI	RGATCY	2 cut(s)	346, 1021
Bsu15I	ATCGAT	2 cut(s)	425, 576
Bsu36I	CCTNAGG	1 cut(s)	98
BsuRI	GGCC	4 cut(s)	103, 483, 668, 805
BsuTUI	ATCGAT	2 cut(s)	425, 576
BtsCI	GGATG	2 cut(s)	328, 640
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	4 cut(s)	525, 615, 708, 861
Cac8I	GCNNGC	3 cut(s)	80, 161, 355
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	1 cut(s)	359
Cfr10I	RCCGGY	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	482
ClaI	ATCGAT	2 cut(s)	425, 576
CspAI	ACCGGT	1 cut(s)	412
CviAII	CATG	1 cut(s)	263
DdeI	CTNAG	4 cut(s)	98, 513, 552, 1137
EaeI	YGGCCR	1 cut(s)	803
Eam1104I	CTCTTC	1 cut(s)	861
EarI	CTCTTC	1 cut(s)	861
Eco130I	CCWWGG	1 cut(s)	740
Eco57I	CTGAAG	2 cut(s)	542, 555
Eco81I	CCTNAGG	1 cut(s)	98
EcoRII	CCWGG	3 cut(s)	478, 503, 1036
EcoT14I	CCWWGG	1 cut(s)	740
ErhI	CCWWGG	1 cut(s)	740
FaeI	CATG	1 cut(s)	266
FatI	CATG	1 cut(s)	262
FauI	CCCGC	1 cut(s)	83
FauNDI	CATATG	1 cut(s)	826
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	4 cut(s)	476, 843, 900, 960
FokI	GGATG	2 cut(s)	335, 647
Fsp4HI	GCNGC	4 cut(s)	476, 843, 900, 960
FspBI	CTAG	1 cut(s)	1004
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	4 cut(s)	476, 843, 900, 960
HaeIII	GGCC	4 cut(s)	103, 483, 668, 805
HapII	CCGG	1 cut(s)	413
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	2 cut(s)	613, 1009
HindII	GTYRAC	2 cut(s)	613, 1009
HinfI	GANTC	7 cut(s)	16, 118, 224, 427, 893, 1045, 1089
HpaI	GTTAAC	2 cut(s)	613, 1009
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	2 cut(s)	688, 1044
Hpy166II	GTNNAC	3 cut(s)	393, 613, 1009
Hpy188I	TCNGA	8 cut(s)	21, 150, 173, 492, 535, 561, 944, 1032
Hpy188III	TCNNGA	4 cut(s)	130, 236, 499, 1093
Hpy8I	GTNNAC	3 cut(s)	393, 613, 1009
HpyAV	CCTTC	5 cut(s)	277, 679, 739, 786, 1059
HpyCH4III	ACNGT	3 cut(s)	397, 529, 967
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	7 cut(s)	221, 280, 353, 845, 854, 899, 962
HpyF10VI	GCNNNNNNNGC	2 cut(s)	851, 1133
HpyF3I	CTNAG	4 cut(s)	98, 513, 552, 1137
HpySE526I	ACGT	1 cut(s)	816
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	357
Ksp22I	TGATCA	1 cut(s)	168
KspAI	GTTAAC	2 cut(s)	613, 1009
LmnI	GCTCC	1 cut(s)	1124
Lsp1109I	GCAGC	4 cut(s)	487, 829, 911, 946
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	1 cut(s)	1004
MaeII	ACGT	1 cut(s)	816
MaeIII	GTNAC	2 cut(s)	704, 1159
MboII	GAAGA	6 cut(s)	113, 548, 878, 1028, 1031, 1082
MflI	RGATCY	2 cut(s)	346, 1021
MhlI	GDGCHC	2 cut(s)	293, 986
MlsI	TGGCCA	1 cut(s)	805
MluCI	AATT	5 cut(s)	133, 209, 231, 269, 753
MluNI	TGGCCA	1 cut(s)	805
MlyI	GAGTC	2 cut(s)	25, 1039
MmeI	TCCRAC	1 cut(s)	1102
Mox20I	TGGCCA	1 cut(s)	805
MscI	TGGCCA	1 cut(s)	805
MseI	TTAA	3 cut(s)	612, 861, 1008
MslI	CAYNNNNRTG	1 cut(s)	620
Msp20I	TGGCCA	1 cut(s)	805
MspA1I	CMGCKG	1 cut(s)	1058
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	3 cut(s)	480, 505, 1038
MvaI	CCWGG	3 cut(s)	480, 505, 1038
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	851, 1133
NdeI	CATATG	1 cut(s)	826
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	4 cut(s)	87, 348, 822, 1126
PfeI	GAWTC	5 cut(s)	118, 224, 427, 893, 1089
PinAI	ACCGGT	1 cut(s)	412
PkrI	GCNGC	4 cut(s)	477, 844, 901, 961
Ple19I	CGATCG	1 cut(s)	580
PleI	GAGTC	2 cut(s)	24, 1039
PpsI	GAGTC	2 cut(s)	24, 1039
Ppu21I	YACGTR	1 cut(s)	817
Psp6I	CCWGG	3 cut(s)	478, 503, 1036
PspGI	CCWGG	3 cut(s)	478, 503, 1036
PspN4I	GGNNCC	4 cut(s)	87, 348, 822, 1126
PspPI	GGNCC	1 cut(s)	482
PstI	CTGCAG	2 cut(s)	856, 901
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	2 cut(s)	346, 1021
PvuI	CGATCG	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	1058
RseI	CAYNNNNRTG	1 cut(s)	620
SaqAI	TTAA	3 cut(s)	612, 861, 1008
SatI	GCNGC	4 cut(s)	476, 843, 900, 960
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	2 cut(s)	25, 1039
ScrFI	CCNGG	3 cut(s)	480, 505, 1038
SduI	GDGCHC	2 cut(s)	293, 986
SfaNI	GCATC	1 cut(s)	538
SfcI	CTRYAG	2 cut(s)	852, 897
SmiMI	CAYNNNNRTG	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	907
SmoI	CTYRAG	1 cut(s)	907
Sse9I	AATT	5 cut(s)	133, 209, 231, 269, 753
SsiI	CCGC	2 cut(s)	35, 76
SspMI	CTAG	1 cut(s)	1004
StyD4I	CCNGG	3 cut(s)	478, 503, 1036
StyI	CCWWGG	1 cut(s)	740
TaaI	ACNGT	3 cut(s)	397, 529, 967
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	7 cut(s)	14, 26, 425, 576, 980, 993, 1092
TaqII	GACCGA	1 cut(s)	190
TasI	AATT	5 cut(s)	133, 209, 231, 269, 753
TfiI	GAWTC	5 cut(s)	118, 224, 427, 893, 1089
Tru1I	TTAA	3 cut(s)	612, 861, 1008
Tru9I	TTAA	3 cut(s)	612, 861, 1008
TscAI	CASTG	4 cut(s)	532, 622, 715, 861
TseI	GCWGC	4 cut(s)	475, 842, 899, 959
TspDTI	ATGAA	6 cut(s)	251, 430, 699, 879, 986, 1083
TspRI	CASTG	4 cut(s)	532, 622, 715, 861
XapI	RAATTY	3 cut(s)	133, 231, 269
XspI	CTAG	1 cut(s)	1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.