Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040359.1

Orthogroup ID

OG0002509

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 534

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040359.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 284 bp

atgctagcagaattggagacaacagatgctcagattcaagaaacatatccaacaaaaactatgcatgtcaagttccagttgcagaaagagtgctcctttggtcagcatttcctcatagtgggggatgatcctatgttgggtttatgggaccctgagagagcaatacagatggactggtccgatgggaatgtgtggtctgttgagctggatatacctgttgggaaatcaatccagttcaagttcatactaaaaggaagcgcagggaatatcttgtggcaacctgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20

Protein Analysis

95

Amino Acids

10.8

Weight (kDa)

4.6

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01260 AT5G01260 AT5G01260
fragaria_vesca	FvH4_3g38430 FvH4_6g11650 FvH4_6g11650 FvH4_6g11650
malus_domestica	MD04G1150500.v1.1 MD12G1164600.v1.1
prunus_persica	Prupe.6G058700_v2.0.a1 Prupe.6G275300_v2.0.a1 Prupe.6G275300_v2.0.a1
pyrus_communis	pycom04g13610 pycom04g13620 pycom11g06380 pycom12g15750
rosa_chinensis	RchiOBHm_Chr3g0463311
rosa_laevigata	RLG00000024791 RLG00000036036
rosa_multiflora	Rmu_co8319585.1_g000001 Rmu_sc0000853.1_g000034 Rmu_sc0000923.1_g000002 Rmu_sc0040359.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011670 Rroxscaffold_6G00416670
rosa_rugosa	Rorug03G0063800 Rorug03G0063900 Rorug03G0064000 Rorug03G0064100 Rorug05G0396200
rosa_samantha	Rh3AG121700 Rh3BG126200 Rh3CG128100 Rh3DG127300 Rh5AG452900 Rh5BG471900 Rh5CG494300 Rh5DG484400
rosa_wichuraiana	Rw0G006070 Rw3G010340 Rw5G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	118, 137
AgsI	TTSAA	2 cut(s)	38, 238
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	148, 177
AsuNHI	GCTAGC	1 cut(s)	4
AvaII	GGWCC	2 cut(s)	148, 177
Bbv12I	GWGCWC	1 cut(s)	95
BccI	CCATC	2 cut(s)	163, 176
BciT130I	CCWGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	5
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	2 cut(s)	148, 177
BmgT120I	GGNCC	2 cut(s)	148, 177
BmiI	GGNNCC	2 cut(s)	149, 150
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	16
BmtI	GCTAGC	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 137
Bse1I	ACTGG	3 cut(s)	76, 179, 232
BseBI	CCWGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	2 cut(s)	118, 137
BseMII	CTCAG	2 cut(s)	44, 144
BseNI	ACTGG	3 cut(s)	76, 179, 232
BsiHKAI	GWGCWC	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	118, 137
BsmAI	GTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	43, 145
BspLI	GGNNCC	2 cut(s)	149, 150
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	122
BsrI	ACTGG	3 cut(s)	76, 179, 232
BssMI	GATC	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	30, 153
BstF5I	GGATG	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	1 cut(s)	130
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	148, 177
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	1 cut(s)	205
CviKI_1	RGCY	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	30, 153
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	148, 177
EcoO109I	RGGNCCY	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	66
FaeI	CATG	1 cut(s)	68
FaiI	YATR	8 cut(s)	46, 62, 66, 116, 134, 145, 212, 245
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	1 cut(s)	64
FokI	GGATG	1 cut(s)	137
FspBI	CTAG	1 cut(s)	5
GlaI	GCGC	1 cut(s)	259
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	68
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HinfI	GANTC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	33, 181
Hpy188III	TCNNGA	1 cut(s)	38
HpyCH4V	TGCA	2 cut(s)	64, 82
HpyF3I	CTNAG	2 cut(s)	30, 153
Hsp92II	CATG	1 cut(s)	68
HspAI	GCGC	1 cut(s)	258
KflI	GGGWCCC	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	8 cut(s)	89, 160, 165, 191, 228, 245, 246, 267
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	5
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	1 cut(s)	122
Mph1103I	ATGCAT	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
NdeII	GATC	1 cut(s)	127
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	2 cut(s)	149, 150
NsiI	ATGCAT	1 cut(s)	66
NspI	RCATGY	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	148
Psp5II	RGGWCCY	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	149, 150
PspPI	GGNCC	2 cut(s)	148, 177
PspPPI	RGGWCCY	1 cut(s)	148
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	2 cut(s)	148, 177
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	3 cut(s)	207, 217, 283
SfaNI	GCATC	1 cut(s)	16
SinI	GGWCC	2 cut(s)	148, 177
Sse9I	AATT	1 cut(s)	11
SspMI	CTAG	1 cut(s)	5
TasI	AATT	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	232
VpaK11BI	GGWCC	2 cut(s)	148, 177
XceI	RCATGY	1 cut(s)	68
XspI	CTAG	1 cut(s)	5
Zsp2I	ATGCAT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.