Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002509

Physical Location & Seq

Genomic Coordinates Forward (+)

77633875 .. 77638299

Gene Structure 4425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG452900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGGCAACTCTAGGCACCCCAGTCCCACGTCATCCCACCACTCCCTCCCCAACCGTCAATAACGACCTTCGCTTCCCAACCCAACCGCTTCTCCCAGTGATAGACCAATGCACCACCATCGACCAGCTCAAGCAAGTCCATGCCCAAATGCTCAAAACAGCCCTATTCTTCGACCCTTATTCCGCCAGTAAGCTCATCACAGCTGCTGCGCTCTCTTCCTTCTCGAGCCTCGACTATGCACGCCAAGTGTTCGACGAAATTCCTGACCCAAATCTGTTCACTTGGAACGCCCTCATTCGCGCGTATGCCTCCAGCGCTGACCCAGTTGAAAGCATTCTCGTATTTCTGCAGATGCTCGATGAGTGTGATGAGTGCCCCAATAAGTTCAGTTTCCCTTTTTTGCTCAAGGCCGCCTCGGAGCTCCGGGCTTCCAAGGTTGGGAGAGGTTTCCATGCCATGGTGATAAAAGCCGAGCTGGGTTCGGATGTTTATATTGTTAATTCGCTCATTCACTTTTATGGGTCGTGCGGGGATTTGGATTTGGCGCGTTTGGTGTTTTTGAAGACTTACAAAAAGGATGTTGTTACTTGGAATTCTGTTATCACGGCTTTTGCTCAGGGGAATTGCCCTGAGGTGGCGTTGGAGTTGTTTAAGGAAATGGAGGCGGAGAATATGAAGCCGAATGATGTCACCATGGTTAGTGTCTTGTCAGCTTGCGCAAAGAAGGCGGATTTGGAGTTTGGGAGGTGGGTTTGTTTGAATGTTGAAAGGCATGGAGTTGAAGAGAACTTGACTTTGAATAATGCTATGTTAGATATGTATGTGAAATGCGGGAGTGTTGAAGATGCAGAGAGATTGTTTGGAAGGATGCCGGAGAAGGACGTTGTGTCATGGACTACTATGCTTGATGGGTATGCTCGGATGGGGAAATATGATGAGGCTAGGCGTGTTTTTGCTGCCATGCCTAGTCAGGATATTGCTGCGTGGAATGTCCTCATTTCATCTTATGAACAGAATGGCAGGCCGAAAGAGGCTTTAGCTGTCTTCCATGAGTTGCAGAAGAACAAGGGTCCCAAGCCTGATGAGAGCCAAATGGAAGCCTTTGCAAGATCTTCCACAACGTTGTTTGCAAAGGCTAATACTAACAAGCGTCCATCGCCTGTAAAAGCTCTTCTGAGTCAATCTAGCATTTGCTTTGTAAGGGTTTGGAATTCAAATGCAAATGTTCATCATCATACTTCTTTGCTTAGGCACAAAGCTATTCGATCGGTTGCCTCATCTGAAACAAGGGTGTTAAGGAACCCAGACTCAGCAGGAATTGGGATCGAACCAGCAGCGCCATCAAAAACCGTTCATGTCCAATTCCAATTACACAAGAAGTGCCGCTTCGGTGATAATTTTCTCTTAGTAGGGAATGAACCTATCATTGGACAGTGGAACCCTTCAAGTGCTATACCCCTTAACTGGTCAGATGGAAACATTTGGACAGTTGACCTGGACATACCAATTGACAGAGCAATCCAGTTCAAGTTTATACTAAAGAAAAGCACAGGAGATCTGTTGTGGCAACCTGGTCCGGACCGAATTCTTCACACCTGGGATACCAACAGCAGTATAACCATAGCCGAAGACTGGAAAAATGCGAAACTTCAGAAATTAACTGAAAAGAAAATTGTCAGTCAAAACGAGACGCTACTTACAAACCAGGCTTATAGCATACCAACTTATAGCAACAAGAATGAGCTTGCTTTCAAAGAGAGGGCGTTTGGTTCTGAAAAGGGAACTCTGCTTCAGGAAAGCCAAGCAGTTTGCATTGCAGATGACGGTGTTTGCATCATGACAAGACCAGCATCCTTAGGAAGCATGGATGAAGATGAATACTGTGAAGTTGAATATTATGACGATGAATATTACGATGATGACTGTGAATATGAAGATAGATATGAAGACGAAGACATCATGTTTACTTATGAAGGAGGCCGTGTTCTCGTGCCTGGTTTAGTACAAGGGGTAACTGGAAAAACCATTGATATCAGTGCTGATGGCTCGATTGTGATTGATGCGAGAGGGGAACACAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

694

Amino Acids

77.59

Weight (kDa)

5.16

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	192 - 241	7.7e-12	PPR repeat family
PPR	PF01535	195 - 224	1.5e-06	PPR repeat
PPR_2	PF13041	293 - 325	2.6e-06	PPR repeat family
PPR	PF01535	296 - 324	1e-06	PPR repeat
PPR_2	PF13041	325 - 362	7.1e-06	PPR repeat family
PPR	PF01535	328 - 355	4.2e-06	PPR repeat
CBM_20	PF00686	450 - 538	4.3e-19	Starch binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01260 AT5G01260 AT5G01260
fragaria_vesca	FvH4_3g38430 FvH4_6g11650 FvH4_6g11650 FvH4_6g11650
malus_domestica	MD04G1150500.v1.1 MD12G1164600.v1.1
prunus_persica	Prupe.6G058700_v2.0.a1 Prupe.6G275300_v2.0.a1 Prupe.6G275300_v2.0.a1
pyrus_communis	pycom04g13610 pycom04g13620 pycom11g06380 pycom12g15750
rosa_chinensis	RchiOBHm_Chr3g0463311
rosa_laevigata	RLG00000024791 RLG00000036036
rosa_multiflora	Rmu_co8319585.1_g000001 Rmu_sc0000853.1_g000034 Rmu_sc0000923.1_g000002 Rmu_sc0040359.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011670 Rroxscaffold_6G00416670
rosa_rugosa	Rorug03G0063800 Rorug03G0063900 Rorug03G0064000 Rorug03G0064100 Rorug05G0396200
rosa_samantha	Rh3AG121700 Rh3BG126200 Rh3CG128100 Rh3DG127300 Rh5AG452900 Rh5BG471900 Rh5CG494300 Rh5DG484400
rosa_wichuraiana	Rw0G006070 Rw3G010340 Rw5G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	718
AccB1I	GGYRCC	1 cut(s)	14
AccB7I	CCANNNNNTGG	1 cut(s)	457
AccII	CGCG	3 cut(s)	300, 302, 547
AccIII	TCCGGA	1 cut(s)	1576
AciI	CCGC	8 cut(s)	86, 183, 411, 528, 665, 728, 831, 1384
AclI	AACGTT	1 cut(s)	1121
AclWI	GGATC	1 cut(s)	1331
AcsI	RAATTY	4 cut(s)	258, 592, 1210, 1584
AcuI	CTGAAG	2 cut(s)	1634, 1775
AfaI	GTAC	1 cut(s)	2004
AfeI	AGCGCT	1 cut(s)	316
AfiI	CCNNNNNNNGG	6 cut(s)	438, 457, 634, 1427, 1464, 1632
AhdI	GACNNNNNGTC	1 cut(s)	886
AjiI	CACGTC	1 cut(s)	29
AjnI	CCWGG	5 cut(s)	1494, 1570, 1595, 1704, 1993
AjuI	GAANNNNNNNTTGG	4 cut(s)	716, 748, 1410, 1442
AloI	GAACNNNNNNTCC	2 cut(s)	1968, 2000
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	1 cut(s)	1682
AlwI	GGATC	1 cut(s)	1331
AlwNI	CAGNNNCTG	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	223
Aor13HI	TCCGGA	1 cut(s)	1576
Aor51HI	AGCGCT	1 cut(s)	316
AoxI	GGCC	3 cut(s)	408, 1022, 1978
ApeKI	GCWGC	5 cut(s)	203, 206, 956, 980, 1334
ApoI	RAATTY	4 cut(s)	258, 592, 1210, 1584
Asp700I	GAANNNNTTC	1 cut(s)	333
AspLEI	GCGC	6 cut(s)	211, 302, 317, 547, 719, 1339
AspS9I	GGNCC	3 cut(s)	1070, 1574, 1579
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	3 cut(s)	472, 682, 1403
AvaI	CYCGRG	1 cut(s)	223
AvaII	GGWCC	3 cut(s)	1070, 1574, 1579
AxyI	CCTNAGG	2 cut(s)	630, 1855
BaeGI	GKGCMC	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	423
BarI	GAAGNNNNNNTAC	2 cut(s)	1155, 1187
BauI	CACGAG	1 cut(s)	1988
BbsI	GAAGAC	5 cut(s)	569, 1036, 1635, 1953, 1959
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	5 cut(s)	190, 193, 943, 967, 1346
BccI	CCATC	7 cut(s)	125, 902, 916, 1162, 1348, 1466, 2036
BceAI	ACGGC	2 cut(s)	621, 1965
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	5 cut(s)	1496, 1572, 1597, 1706, 1995
BciVI	GTATCC	1 cut(s)	1594
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	1682
BfaI	CTAG	4 cut(s)	11, 942, 966, 1185
BfmI	CTRYAG	1 cut(s)	347
BfoI	RGCGCY	2 cut(s)	318, 1340
BfuI	GTATCC	1 cut(s)	1594
BglII	AGATCT	2 cut(s)	1109, 1555
BisI	GCNGC	7 cut(s)	204, 207, 411, 957, 981, 1335, 1384
BlsI	GCNGC	7 cut(s)	205, 208, 412, 958, 982, 1336, 1385
Bme1390I	CCNGG	6 cut(s)	425, 1496, 1572, 1597, 1706, 1995
Bme18I	GGWCC	3 cut(s)	1070, 1574, 1579
BmeRI	GACNNNNNGTC	1 cut(s)	886
BmeT110I	CYCGRG	1 cut(s)	223
BmgBI	CACGTC	1 cut(s)	29
BmgT120I	GGNCC	3 cut(s)	1070, 1574, 1579
BmiI	GGNNCC	5 cut(s)	16, 1071, 1072, 1301, 1439
BmrFI	CCNGG	6 cut(s)	425, 1496, 1572, 1597, 1706, 1995
BmrI	ACTGGG	3 cut(s)	14, 89, 317
BmsI	GCATC	6 cut(s)	342, 835, 858, 1842, 1859, 2050
BmuI	ACTGGG	3 cut(s)	14, 89, 317
BpiI	GAAGAC	5 cut(s)	569, 1036, 1635, 1953, 1959
BpmI	CTGGAG	1 cut(s)	295
Bpu10I	CCTNAGC	2 cut(s)	615, 1247
BpuEI	CTTGAG	2 cut(s)	113, 389
BpuMI	CCSGG	1 cut(s)	425
BsaJI	CCNNGG	5 cut(s)	414, 432, 456, 693, 1596
BsaWI	WCCGGW	1 cut(s)	1576
BsaXI	ACNNNNNCTCC	4 cut(s)	75, 105, 1968, 1998
Bsc4I	CCNNNNNNNGG	6 cut(s)	438, 457, 634, 1427, 1464, 1632
Bse1I	ACTGG	8 cut(s)	20, 95, 186, 323, 1469, 1522, 1637, 2020
Bse21I	CCTNAGG	2 cut(s)	630, 1855
Bse3DI	GCAATG	1 cut(s)	1812
BseAI	TCCGGA	1 cut(s)	1576
BseBI	CCWGG	5 cut(s)	1496, 1572, 1597, 1706, 1995
BseDI	CCNNGG	5 cut(s)	414, 432, 456, 693, 1596
BseGI	GGATG	7 cut(s)	31, 490, 583, 873, 927, 1850, 1873
BseLI	CCNNNNNNNGG	6 cut(s)	438, 457, 634, 1427, 1464, 1632
BseMI	GCAATG	1 cut(s)	1812
BseMII	CTCAG	4 cut(s)	621, 629, 1166, 1323
BseNI	ACTGG	8 cut(s)	20, 95, 186, 323, 1469, 1522, 1637, 2020
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	5 cut(s)	190, 193, 943, 967, 1346
BseYI	CCCAGC	1 cut(s)	475
Bsh1236I	CGCG	3 cut(s)	300, 302, 547
Bsh1285I	CGRYCG	1 cut(s)	1268
BshFI	GGCC	3 cut(s)	410, 1024, 1980
BshNI	GGYRCC	1 cut(s)	14
BsiEI	CGRYCG	1 cut(s)	1268
BsiHKAI	GWGCWC	1 cut(s)	423
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	3 cut(s)	424, 872, 1577
BslFI	GGGAC	2 cut(s)	8, 1056
BslI	CCNNNNNNNGG	6 cut(s)	438, 457, 634, 1427, 1464, 1632
BsmAI	GTCTC	1 cut(s)	1682
BsmBI	CGTCTC	1 cut(s)	1682
BsmFI	GGGAC	2 cut(s)	8, 1056
BsmI	GAATGC	1 cut(s)	333
BsnI	GGCC	3 cut(s)	410, 1024, 1980
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	377, 423
Bsp13I	TCCGGA	1 cut(s)	1576
Bsp143I	GATC	4 cut(s)	1109, 1265, 1323, 1555
Bsp19I	CCATGG	2 cut(s)	456, 693
BspACI	CCGC	8 cut(s)	86, 183, 411, 528, 665, 728, 831, 1384
BspANI	GGCC	3 cut(s)	410, 1024, 1980
BspCNI	CTCAG	4 cut(s)	622, 628, 1167, 1322
BspEI	TCCGGA	1 cut(s)	1576
BspFNI	CGCG	3 cut(s)	300, 302, 547
BspHI	TCATGA	1 cut(s)	1836
BspLI	GGNNCC	5 cut(s)	16, 1071, 1072, 1301, 1439
BspMAI	CTGCAG	1 cut(s)	351
BspPI	GGATC	1 cut(s)	1331
BspQI	GCTCTTC	1 cut(s)	1176
BspT107I	GGYRCC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	1812
BsrI	ACTGG	8 cut(s)	20, 95, 186, 323, 1469, 1522, 1637, 2020
BssECI	CCNNGG	5 cut(s)	414, 432, 456, 693, 1596
BssMI	GATC	4 cut(s)	1109, 1265, 1323, 1555
BssSI	CACGAG	1 cut(s)	1988
BssT1I	CCWWGG	3 cut(s)	432, 456, 693
Bst2BI	CACGAG	1 cut(s)	1988
Bst2UI	CCWGG	5 cut(s)	1496, 1572, 1597, 1706, 1995
Bst4CI	ACNGT	7 cut(s)	55, 1351, 1434, 1489, 1826, 1883, 1925
Bst6I	CTCTTC	3 cut(s)	220, 777, 1176
BstC8I	GCNNGC	4 cut(s)	241, 715, 1022, 1746
BstDEI	CTNAG	7 cut(s)	615, 630, 1175, 1247, 1309, 1405, 1855
BstDSI	CCRYGG	2 cut(s)	456, 693
BstF5I	GGATG	7 cut(s)	31, 490, 583, 873, 927, 1850, 1873
BstFNI	CGCG	3 cut(s)	300, 302, 547
BstH2I	RGCGCY	2 cut(s)	318, 1340
BstHHI	GCGC	6 cut(s)	211, 302, 317, 547, 719, 1339
BstKTI	GATC	4 cut(s)	1112, 1268, 1326, 1558
BstMAI	GTCTC	1 cut(s)	1682
BstMBI	GATC	4 cut(s)	1109, 1265, 1323, 1555
BstMCI	CGRYCG	1 cut(s)	1268
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 725, 1156
BstNI	CCWGG	5 cut(s)	1496, 1572, 1597, 1706, 1995
BstSCI	CCNGG	6 cut(s)	423, 1494, 1570, 1595, 1704, 1993
BstSFI	CTRYAG	1 cut(s)	347
BstSLI	GKGCMC	1 cut(s)	377
BstUI	CGCG	3 cut(s)	300, 302, 547
BstV1I	GCAGC	5 cut(s)	190, 193, 943, 967, 1346
BstV2I	GAAGAC	5 cut(s)	569, 1036, 1635, 1953, 1959
BstX2I	RGATCY	2 cut(s)	1109, 1555
BstYI	RGATCY	2 cut(s)	1109, 1555
Bsu36I	CCTNAGG	2 cut(s)	630, 1855
BsuI	GTATCC	1 cut(s)	1594
BsuRI	GGCC	3 cut(s)	410, 1024, 1980
BtgI	CCRYGG	2 cut(s)	456, 693
BtgZI	GCGATG	1 cut(s)	1140
BtrI	CACGTC	1 cut(s)	29
BtsCI	GGATG	7 cut(s)	31, 490, 583, 873, 927, 1850, 1873
BtsIMutI	CAGTG	3 cut(s)	102, 1439, 2041
Cac8I	GCNNGC	4 cut(s)	241, 715, 1022, 1746
CaiI	CAGNNNCTG	1 cut(s)	206
CciI	TCATGA	1 cut(s)	1836
CfoI	GCGC	6 cut(s)	211, 302, 317, 547, 719, 1339
Cfr13I	GGNCC	3 cut(s)	1070, 1574, 1579
CpoI	CGGWCCG	1 cut(s)	1579
CseI	GACGC	2 cut(s)	1139, 1699
CsiI	ACCWGGT	1 cut(s)	1570
Csp6I	GTAC	1 cut(s)	2003
CspI	CGGWCCG	1 cut(s)	1579
CviQI	GTAC	1 cut(s)	2003
DdeI	CTNAG	7 cut(s)	615, 630, 1175, 1247, 1309, 1405, 1855
DpnI	GATC	4 cut(s)	1111, 1267, 1325, 1557
DpnII	GATC	4 cut(s)	1109, 1265, 1323, 1555
DriI	GACNNNNNGTC	1 cut(s)	886
Eam1104I	CTCTTC	3 cut(s)	220, 777, 1176
Eam1105I	GACNNNNNGTC	1 cut(s)	886
EarI	CTCTTC	3 cut(s)	220, 777, 1176
EciI	GGCGGA	3 cut(s)	172, 680, 743
Ecl136II	GAGCTC	1 cut(s)	421
Eco130I	CCWWGG	3 cut(s)	432, 456, 693
Eco24I	GRGCYC	1 cut(s)	423
Eco32I	GATATC	1 cut(s)	2032
Eco47I	GGWCC	3 cut(s)	1070, 1574, 1579
Eco47III	AGCGCT	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	421
Eco57I	CTGAAG	2 cut(s)	1634, 1775
Eco81I	CCTNAGG	2 cut(s)	630, 1855
Eco88I	CYCGRG	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	421
EcoO109I	RGGNCCY	1 cut(s)	1070
EcoRI	GAATTC	3 cut(s)	592, 1210, 1584
EcoRII	CCWGG	5 cut(s)	1494, 1570, 1595, 1704, 1993
EcoRV	GATATC	1 cut(s)	2032
EcoT14I	CCWWGG	3 cut(s)	432, 456, 693
EcoT38I	GRGCYC	1 cut(s)	423
ErhI	CCWWGG	3 cut(s)	432, 456, 693
Esp3I	CGTCTC	1 cut(s)	1682
FalI	AAGNNNNNCTT	2 cut(s)	1370, 1402
FaqI	GGGAC	2 cut(s)	8, 1056
FauI	CCCGC	2 cut(s)	521, 824
Fnu4HI	GCNGC	7 cut(s)	204, 207, 411, 957, 981, 1335, 1384
FokI	GGATG	7 cut(s)	18, 497, 590, 880, 934, 1837, 1880
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	7 cut(s)	204, 207, 411, 957, 981, 1335, 1384
FspBI	CTAG	4 cut(s)	11, 942, 966, 1185
FspI	TGCGCA	1 cut(s)	718
GlaI	GCGC	6 cut(s)	210, 301, 316, 546, 718, 1338
GluI	GCNGC	7 cut(s)	204, 207, 411, 957, 981, 1335, 1384
GsaI	CCCAGC	1 cut(s)	479
GsuI	CTGGAG	1 cut(s)	295
HaeII	RGCGCY	2 cut(s)	318, 1340
HaeIII	GGCC	3 cut(s)	410, 1024, 1980
HapII	CCGG	3 cut(s)	424, 872, 1577
HgaI	GACGC	2 cut(s)	1139, 1699
HhaI	GCGC	6 cut(s)	211, 302, 317, 547, 719, 1339
Hin6I	GCGC	6 cut(s)	209, 300, 315, 545, 717, 1337
HinP1I	GCGC	6 cut(s)	209, 300, 315, 545, 717, 1337
HincII	GTYRAC	1 cut(s)	1492
HindII	GTYRAC	1 cut(s)	1492
HinfI	GANTC	2 cut(s)	1177, 1307
HpaII	CCGG	3 cut(s)	424, 872, 1577
HphI	GGTGA	3 cut(s)	472, 682, 1403
Hpy166II	GTNNAC	3 cut(s)	279, 1492, 1965
Hpy188I	TCNGA	8 cut(s)	418, 484, 921, 1176, 1282, 1471, 1653, 1774
Hpy188III	TCNNGA	6 cut(s)	223, 263, 971, 1577, 1793, 1837
Hpy8I	GTNNAC	3 cut(s)	279, 1492, 1965
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	7 cut(s)	77, 229, 718, 858, 871, 1452, 1967
HpyCH4III	ACNGT	7 cut(s)	55, 1351, 1434, 1489, 1826, 1883, 1925
HpyCH4IV	ACGT	3 cut(s)	28, 882, 1121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 725, 1156
HpyF3I	CTNAG	7 cut(s)	615, 630, 1175, 1247, 1309, 1405, 1855
HpySE526I	ACGT	3 cut(s)	28, 882, 1121
HspAI	GCGC	6 cut(s)	209, 300, 315, 545, 717, 1337
KflI	GGGWCCC	1 cut(s)	1070
Kpn2I	TCCGGA	1 cut(s)	1576
Kzo9I	GATC	4 cut(s)	1109, 1265, 1323, 1555
LguI	GCTCTTC	1 cut(s)	1176
LmnI	GCTCC	2 cut(s)	418, 426
Lsp1109I	GCAGC	5 cut(s)	190, 193, 943, 967, 1346
LweI	GCATC	6 cut(s)	342, 835, 858, 1842, 1859, 2050
MabI	ACCWGGT	1 cut(s)	1570
MaeI	CTAG	4 cut(s)	11, 942, 966, 1185
MaeII	ACGT	3 cut(s)	28, 882, 1121
MaeIII	GTNAC	3 cut(s)	583, 688, 2011
MalI	GATC	4 cut(s)	1111, 1267, 1325, 1557
MboI	GATC	4 cut(s)	1109, 1265, 1323, 1555
MfeI	CAATTG	1 cut(s)	1506
MflI	RGATCY	2 cut(s)	1109, 1555
MhlI	GDGCHC	2 cut(s)	377, 423
MlyI	GAGTC	2 cut(s)	1186, 1301
MmeI	TCCRAC	1 cut(s)	621
MroI	TCCGGA	1 cut(s)	1576
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	6 cut(s)	498, 651, 1295, 1461, 1658, 2083
MslI	CAYNNNNRTG	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	3 cut(s)	424, 872, 1577
MspR9I	CCNGG	6 cut(s)	425, 1496, 1572, 1597, 1706, 1995
MunI	CAATTG	1 cut(s)	1506
Mva1269I	GAATGC	1 cut(s)	333
MvaI	CCWGG	5 cut(s)	1496, 1572, 1597, 1706, 1995
MvnI	CGCG	3 cut(s)	300, 302, 547
MwoI	GCNNNNNNNGC	3 cut(s)	314, 725, 1156
NciI	CCSGG	1 cut(s)	425
NcoI	CCATGG	2 cut(s)	456, 693
NdeII	GATC	4 cut(s)	1109, 1265, 1323, 1555
NlaIV	GGNNCC	5 cut(s)	16, 1071, 1072, 1301, 1439
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	1 cut(s)	688
NsbI	TGCGCA	1 cut(s)	718
PaeR7I	CTCGAG	1 cut(s)	223
PagI	TCATGA	1 cut(s)	1836
PciSI	GCTCTTC	1 cut(s)	1176
PctI	GAATGC	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	333
PflMI	CCANNNNNTGG	1 cut(s)	457
PkrI	GCNGC	7 cut(s)	205, 208, 412, 958, 982, 1336, 1385
Ple19I	CGATCG	1 cut(s)	1268
PleI	GAGTC	2 cut(s)	1185, 1301
PpsI	GAGTC	2 cut(s)	1185, 1301
PpuMI	RGGWCCY	1 cut(s)	1070
Psp124BI	GAGCTC	1 cut(s)	423
Psp1406I	AACGTT	1 cut(s)	1121
Psp5II	RGGWCCY	1 cut(s)	1070
Psp6I	CCWGG	5 cut(s)	1494, 1570, 1595, 1704, 1993
PspFI	CCCAGC	1 cut(s)	475
PspGI	CCWGG	5 cut(s)	1494, 1570, 1595, 1704, 1993
PspN4I	GGNNCC	5 cut(s)	16, 1071, 1072, 1301, 1439
PspPI	GGNCC	3 cut(s)	1070, 1574, 1579
PspPPI	RGGWCCY	1 cut(s)	1070
PstI	CTGCAG	1 cut(s)	351
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	2 cut(s)	1109, 1555
PvuI	CGATCG	1 cut(s)	1268
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	2004
RsaNI	GTAC	1 cut(s)	2003
RseI	CAYNNNNRTG	1 cut(s)	516
Rsr2I	CGGWCCG	1 cut(s)	1579
RsrII	CGGWCCG	1 cut(s)	1579
SacI	GAGCTC	1 cut(s)	423
SapI	GCTCTTC	1 cut(s)	1176
SaqAI	TTAA	6 cut(s)	498, 651, 1295, 1461, 1658, 2083
SatI	GCNGC	7 cut(s)	204, 207, 411, 957, 981, 1335, 1384
Sau3AI	GATC	4 cut(s)	1109, 1265, 1323, 1555
Sau96I	GGNCC	3 cut(s)	1070, 1574, 1579
SchI	GAGTC	2 cut(s)	1186, 1301
ScrFI	CCNGG	6 cut(s)	425, 1496, 1572, 1597, 1706, 1995
SduI	GDGCHC	2 cut(s)	377, 423
SexAI	ACCWGGT	1 cut(s)	1570
SfaNI	GCATC	6 cut(s)	342, 835, 858, 1842, 1859, 2050
SfcI	CTRYAG	1 cut(s)	347
Sfr274I	CTCGAG	1 cut(s)	223
SinI	GGWCC	3 cut(s)	1070, 1574, 1579
SlaI	CTCGAG	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	3 cut(s)	128, 223, 404
SmoI	CTYRAG	3 cut(s)	128, 223, 404
SsiI	CCGC	8 cut(s)	86, 183, 411, 528, 665, 728, 831, 1384
SspI	AATATT	2 cut(s)	1895, 1910
SspMI	CTAG	4 cut(s)	11, 942, 966, 1185
SstI	GAGCTC	1 cut(s)	423
StyD4I	CCNGG	6 cut(s)	423, 1494, 1570, 1595, 1704, 1993
StyI	CCWWGG	3 cut(s)	432, 456, 693
TaaI	ACNGT	7 cut(s)	55, 1351, 1434, 1489, 1826, 1883, 1925
TaiI	ACGT	3 cut(s)	31, 885, 1124
TaqI	TCGA	9 cut(s)	120, 171, 224, 231, 252, 357, 1264, 1326, 2048
TaqII	GACCGA	1 cut(s)	1596
TatI	WGTACW	1 cut(s)	2002
TauI	GCSGC	2 cut(s)	413, 1386
Tru1I	TTAA	6 cut(s)	498, 651, 1295, 1461, 1658, 2083
Tru9I	TTAA	6 cut(s)	498, 651, 1295, 1461, 1658, 2083
TscAI	CASTG	3 cut(s)	102, 1439, 2041
TseFI	GTSAC	1 cut(s)	688
TseI	GCWGC	5 cut(s)	203, 206, 956, 980, 1334
Tsp45I	GTSAC	1 cut(s)	688
TspRI	CASTG	3 cut(s)	102, 1439, 2041
Van91I	CCANNNNNTGG	1 cut(s)	457
VpaK11BI	GGWCC	3 cut(s)	1070, 1574, 1579
XapI	RAATTY	4 cut(s)	258, 592, 1210, 1584
XhoI	CTCGAG	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	4 cut(s)	11, 942, 966, 1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.