Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8319585.1

Orthogroup ID

OG0002509

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 251

Gene Structure 251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8319585.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 251 bp

tcatgacaagaccagcatccttaggaagcatggatgaagatgaatactgtgaagttgaatattatgacgatgaatattacgatgatgactgtgaatatgaagatagatatgaagacgaagacatcatgtttacttatgaaggaggccgtgttctcgtgcctggtttagtacaaggggtaactggaaaagccattgatatcagtgctgatggctcgattgtgattgatgcgagaggggaacacaatttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

82

Amino Acids

9.35

Weight (kDa)

4.05

Isoelectric Point (pI)

24.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01260 AT5G01260 AT5G01260
fragaria_vesca	FvH4_3g38430 FvH4_6g11650 FvH4_6g11650 FvH4_6g11650
malus_domestica	MD04G1150500.v1.1 MD12G1164600.v1.1
prunus_persica	Prupe.6G058700_v2.0.a1 Prupe.6G275300_v2.0.a1 Prupe.6G275300_v2.0.a1
pyrus_communis	pycom04g13610 pycom04g13620 pycom11g06380 pycom12g15750
rosa_chinensis	RchiOBHm_Chr3g0463311
rosa_laevigata	RLG00000024791 RLG00000036036
rosa_multiflora	Rmu_co8319585.1_g000001 Rmu_sc0000853.1_g000034 Rmu_sc0000923.1_g000002 Rmu_sc0040359.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011670 Rroxscaffold_6G00416670
rosa_rugosa	Rorug03G0063800 Rorug03G0063900 Rorug03G0064000 Rorug03G0064100 Rorug05G0396200
rosa_samantha	Rh3AG121700 Rh3BG126200 Rh3CG128100 Rh3DG127300 Rh5AG452900 Rh5BG471900 Rh5CG494300 Rh5DG484400
rosa_wichuraiana	Rw0G006070 Rw3G010340 Rw5G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	159
AloI	GAACNNNNNNTCC	2 cut(s)	134, 166
AoxI	GGCC	1 cut(s)	144
AxyI	CCTNAGG	1 cut(s)	21
BauI	CACGAG	1 cut(s)	154
BbsI	GAAGAC	2 cut(s)	119, 125
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	2 cut(s)	25, 216
BpiI	GAAGAC	2 cut(s)	119, 125
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bse1I	ACTGG	1 cut(s)	186
Bse21I	CCTNAGG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	161
BseGI	GGATG	2 cut(s)	16, 39
BseNI	ACTGG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	146
BspANI	GGCC	1 cut(s)	146
BspHI	TCATGA	1 cut(s)	2
BsrI	ACTGG	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	154
Bst2BI	CACGAG	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	2 cut(s)	49, 91
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	16, 39
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstV2I	GAAGAC	2 cut(s)	119, 125
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	16, 39
BtsIMutI	CAGTG	1 cut(s)	207
CciI	TCATGA	1 cut(s)	2
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	3 cut(s)	3, 30, 126
CviJI	RGCY	3 cut(s)	146, 190, 212
CviKI_1	RGCY	3 cut(s)	146, 190, 212
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	1 cut(s)	21
Eco32I	GATATC	1 cut(s)	198
Eco81I	CCTNAGG	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	159
EcoRV	GATATC	1 cut(s)	198
FaeI	CATG	3 cut(s)	6, 33, 129
FaiI	YATR	7 cut(s)	4, 31, 65, 98, 110, 127, 137
FatI	CATG	3 cut(s)	2, 29, 125
FokI	GGATG	2 cut(s)	3, 46
HaeIII	GGCC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	6, 33, 129
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188III	TCNNGA	1 cut(s)	3
Hpy8I	GTNNAC	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	2 cut(s)	49, 91
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	6, 33, 129
LpnPI	CCDG	4 cut(s)	26, 146, 167, 173
LweI	GCATC	2 cut(s)	25, 216
MaeIII	GTNAC	1 cut(s)	177
MboII	GAAGA	4 cut(s)	49, 112, 124, 130
MluCI	AATT	1 cut(s)	243
MnlI	CCTC	2 cut(s)	136, 226
MseI	TTAA	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
NlaIII	CATG	3 cut(s)	6, 33, 129
PagI	TCATGA	1 cut(s)	2
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	161
SfaNI	GCATC	2 cut(s)	25, 216
Sse9I	AATT	1 cut(s)	243
SspI	AATATT	2 cut(s)	61, 76
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	49, 91
TaqI	TCGA	1 cut(s)	214
TasI	AATT	1 cut(s)	243
TatI	WGTACW	1 cut(s)	168
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	207
TspDTI	ATGAA	6 cut(s)	50, 56, 86, 113, 125, 152
TspRI	CASTG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.