Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003466

Physical Location & Seq

Genomic Coordinates Reverse (-)

33922976 .. 33927000

Gene Structure 4025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g40120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCGACGTCTGGTGTCTACCCAAGGGTGTGTCTACTCGAGCGGTTTGTGGACAGGTGTCAGCGGATGGTTGTGACACGTGTAGACAGTGAGGGTAAGACGAGCAACACTATCTCCGGTCTGCCCGAACTCGCCGCTTCCGACTCAACTTTCGACGTCGTTGCAGGAGGTCGTGCCACTGTGCCAACACGCCGCCGATTGGATGAGGATGAGTTGGGAGGTCCGTCCTATTCCTATGAAGTATTGTTGGGTAGAAGAGATGCAACAACTACAAGCATAAACGATGCCAACAGAAACCTTCCACCTCCGTTTTTCAACTTCCCTCAACTTCTTTCCAACTTTCAATCCCATGGTTTAGACCTACAAGACCTAGTCCTTCTCTCGGCTGGCCACACCATCGGACTGGCTAGGTCCTCCCTGAAACAAGGTTGTCCTTCAAATGGTGGGGATGACAACACGGCGCCACTAGACTCAACGACAGCGAGTTTCGATACTGATCACTTCAAGGCTTTGCTGGAGAAGAAGGGTCTGCTCCACTCTGACCAGGAGCTCTTTAAAGGCGATGGTAGTGACAGTGACAACCTGGTGCAGCATTACGCTAACAATCCGAAAGACTTTGCAGTTGATTTTGGAGCTTCCTTGATCAAGATGGGTAACATGAAGCCTCTCACTGGATCTGGTGGTGAGATTAGACTCAACTGCAGGAAAATCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

239

Amino Acids

25.77

Weight (kDa)

5.54

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	72 - 202	5.7e-28	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40120 FvH4_3g40140 FvH4_3g40150 FvH4_3g40160
malus_domestica	MD03G1059000.v1.1 MD11G1061000.v1.1 MD11G1061100.v1.1 MD11G1061200.v1.1
prunus_persica	Prupe.6G044200_v2.0.a1 Prupe.6G044500_v2.0.a1 Prupe.6G044600_v2.0.a1 Prupe.6G044700_v2.0.a1 Prupe.6G044800_v2.0.a1
pyrus_communis	pycom11g05080
rosa_chinensis	RchiOBHm_Chr5g0072301 RchiOBHm_Chr5g0072331 RchiOBHm_Chr5g0072351
rosa_laevigata	RLG00000036292 RLG00000036293
rosa_multiflora	Rmu_co8350947.1_g000001 Rmu_sc0000737.1_g000016 Rmu_sc0008937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008870 Rroxscaffold_1G00008880 Rroxscaffold_1G00008900 Rroxscaffold_1G00008940 Rroxscaffold_1G00008950 Rroxscaffold_1G00008960
rosa_samantha	Rh5AG473600 Rh5BG494100 Rh5CG517800 Rh5CG518100 Rh5DG506000 Rh5DG506200
rosa_wichuraiana	Rw5G043990 Rw5G044010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	11, 159
AccB1I	GGYRCC	1 cut(s)	460
AccBSI	CCGCTC	1 cut(s)	43
AccI	GTMKAC	3 cut(s)	18, 34, 84
AciI	CCGC	4 cut(s)	43, 64, 135, 193
AclWI	GGATC	1 cut(s)	682
AcoI	YGGCCR	1 cut(s)	388
AcvI	CACGTG	1 cut(s)	80
AcyI	GRCGYC	3 cut(s)	8, 156, 461
AfiI	CCNNNNNNNGG	4 cut(s)	199, 382, 440, 671
AflIII	ACRYGT	2 cut(s)	77, 79
AgsI	TTSAA	4 cut(s)	316, 344, 438, 505
AjnI	CCWGG	2 cut(s)	543, 582
AluBI	AGCT	2 cut(s)	550, 635
AluI	AGCT	2 cut(s)	550, 635
Alw21I	GWGCWC	1 cut(s)	552
AlwI	GGATC	1 cut(s)	682
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	589
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	2 cut(s)	221, 411
AsuHPI	GGTGA	1 cut(s)	695
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	2 cut(s)	221, 411
BalI	TGGCCA	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	552
BbrPI	CACGTG	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	1 cut(s)	601
BccI	CCATC	4 cut(s)	61, 404, 557, 643
BceAI	ACGGC	1 cut(s)	474
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	2 cut(s)	545, 584
BclI	TGATCA	2 cut(s)	496, 642
BfaI	CTAG	3 cut(s)	371, 408, 467
BfmI	CTRYAG	1 cut(s)	700
BfoI	RGCGCY	1 cut(s)	464
BisI	GCNGC	3 cut(s)	135, 193, 590
BlsI	GCNGC	3 cut(s)	136, 194, 591
Bme1390I	CCNGG	2 cut(s)	545, 584
Bme18I	GGWCC	2 cut(s)	221, 411
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	221, 411
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	2 cut(s)	545, 584
BmsI	GCATC	2 cut(s)	250, 274
BoxI	GACNNNNGTC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	536
BsaAI	YACGTR	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	495
BsaHI	GRCGYC	3 cut(s)	8, 156, 461
BsaJI	CCNNGG	2 cut(s)	23, 349
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 382, 440, 671
Bse1I	ACTGG	2 cut(s)	408, 676
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	545, 584
BseDI	CCNNGG	2 cut(s)	23, 349
BseGI	GGATG	4 cut(s)	72, 208, 214, 454
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	4 cut(s)	199, 382, 440, 671
BseNI	ACTGG	2 cut(s)	408, 676
BseXI	GCAGC	1 cut(s)	601
BsgI	GTGCAG	1 cut(s)	608
BshFI	GGCC	1 cut(s)	390
BshNI	GGYRCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	552
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	4 cut(s)	199, 382, 440, 671
BsnI	GGCC	1 cut(s)	390
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp143I	GATC	3 cut(s)	496, 642, 674
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	4 cut(s)	43, 64, 135, 193
BspANI	GGCC	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	462
BspMAI	CTGCAG	1 cut(s)	704
BspPI	GGATC	1 cut(s)	682
BspT107I	GGYRCC	1 cut(s)	460
BsrBI	CCGCTC	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	408, 676
BssECI	CCNNGG	2 cut(s)	23, 349
BssMI	GATC	3 cut(s)	496, 642, 674
BssNI	GRCGYC	3 cut(s)	8, 156, 461
BssT1I	CCWWGG	2 cut(s)	23, 349
Bst2UI	CCWGG	2 cut(s)	545, 584
Bst4CI	ACNGT	3 cut(s)	89, 181, 575
Bst6I	CTCTTC	1 cut(s)	250
BstACI	GRCGYC	3 cut(s)	8, 156, 461
BstBAI	YACGTR	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	388
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	4 cut(s)	72, 208, 214, 454
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	3 cut(s)	499, 645, 677
BstMBI	GATC	3 cut(s)	496, 642, 674
BstNI	CCWGG	2 cut(s)	545, 584
BstPAI	GACNNNNGTC	1 cut(s)	57
BstSCI	CCNGG	2 cut(s)	543, 582
BstSFI	CTRYAG	1 cut(s)	700
BstV1I	GCAGC	1 cut(s)	601
BstX2I	RGATCY	1 cut(s)	674
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	674
BsuRI	GGCC	1 cut(s)	390
BtgI	CCRYGG	1 cut(s)	349
BtgZI	GCGATG	1 cut(s)	576
BtsCI	GGATG	4 cut(s)	72, 208, 214, 454
BtsIMutI	CAGTG	4 cut(s)	94, 177, 580, 669
Cac8I	GCNNGC	1 cut(s)	388
CfoI	GCGC	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	221, 411
CsiI	ACCWGGT	1 cut(s)	582
CviAII	CATG	2 cut(s)	350, 658
CviJI	RGCY	7 cut(s)	386, 390, 407, 509, 550, 635, 664
CviKI_1	RGCY	7 cut(s)	386, 390, 407, 509, 550, 635, 664
DinI	GGCGCC	1 cut(s)	462
DpnI	GATC	3 cut(s)	498, 644, 676
DpnII	GATC	3 cut(s)	496, 642, 674
DraI	TTTAAA	1 cut(s)	556
EaeI	YGGCCR	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	550
Eco130I	CCWWGG	2 cut(s)	23, 349
Eco24I	GRGCYC	1 cut(s)	552
Eco47I	GGWCC	2 cut(s)	221, 411
Eco53kI	GAGCTC	1 cut(s)	550
Eco72I	CACGTG	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	550
EcoO109I	RGGNCCY	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	543, 582
EcoT14I	CCWWGG	2 cut(s)	23, 349
EcoT38I	GRGCYC	1 cut(s)	552
EgeI	GGCGCC	1 cut(s)	462
EheI	GGCGCC	1 cut(s)	462
ErhI	CCWWGG	2 cut(s)	23, 349
FaeI	CATG	2 cut(s)	353, 661
FaiI	YATR	4 cut(s)	237, 278, 351, 659
FatI	CATG	2 cut(s)	349, 657
FbaI	TGATCA	2 cut(s)	496, 642
FblI	GTMKAC	3 cut(s)	18, 34, 84
Fnu4HI	GCNGC	3 cut(s)	135, 193, 590
FokI	GGATG	4 cut(s)	79, 215, 221, 461
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	3 cut(s)	135, 193, 590
FspBI	CTAG	3 cut(s)	371, 408, 467
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	3 cut(s)	135, 193, 590
GsuI	CTGGAG	1 cut(s)	536
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	1 cut(s)	390
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	1 cut(s)	463
Hin1I	GRCGYC	3 cut(s)	8, 156, 461
Hin1II	CATG	2 cut(s)	353, 661
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HinfI	GANTC	3 cut(s)	143, 470, 693
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	4 cut(s)	19, 35, 52, 85
Hpy188I	TCNGA	4 cut(s)	142, 401, 541, 609
Hpy188III	TCNNGA	1 cut(s)	646
Hpy8I	GTNNAC	4 cut(s)	19, 35, 52, 85
Hpy99I	CGWCG	3 cut(s)	10, 158, 161
HpyAV	CCTTC	4 cut(s)	308, 386, 444, 517
HpyCH4III	ACNGT	3 cut(s)	89, 181, 575
HpyCH4IV	ACGT	3 cut(s)	8, 79, 156
HpyCH4V	TGCA	5 cut(s)	164, 263, 589, 620, 702
HpySE526I	ACGT	3 cut(s)	8, 79, 156
Hsp92I	GRCGYC	3 cut(s)	8, 156, 461
Hsp92II	CATG	2 cut(s)	353, 661
HspAI	GCGC	1 cut(s)	461
KasI	GGCGCC	1 cut(s)	460
Ksp22I	TGATCA	2 cut(s)	496, 642
Kzo9I	GATC	3 cut(s)	496, 642, 674
LmnI	GCTCC	3 cut(s)	537, 547, 632
Lsp1109I	GCAGC	1 cut(s)	601
LweI	GCATC	2 cut(s)	250, 274
MabI	ACCWGGT	1 cut(s)	582
MaeI	CTAG	3 cut(s)	371, 408, 467
MaeII	ACGT	3 cut(s)	8, 79, 156
MaeIII	GTNAC	4 cut(s)	73, 569, 575, 653
MalI	GATC	3 cut(s)	498, 644, 676
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	3 cut(s)	496, 642, 674
MboII	GAAGA	2 cut(s)	267, 532
MflI	RGATCY	1 cut(s)	674
MhlI	GDGCHC	1 cut(s)	552
MlsI	TGGCCA	1 cut(s)	390
MluNI	TGGCCA	1 cut(s)	390
Mly113I	GGCGCC	1 cut(s)	461
MlyI	GAGTC	3 cut(s)	137, 464, 687
MmeI	TCCRAC	2 cut(s)	165, 360
MnlI	CCTC	8 cut(s)	85, 161, 199, 212, 315, 333, 424, 675
Mox20I	TGGCCA	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	390
MseI	TTAA	1 cut(s)	555
Msp20I	TGGCCA	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	2 cut(s)	545, 584
MvaI	CCWGG	2 cut(s)	545, 584
NarI	GGCGCC	1 cut(s)	461
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	3 cut(s)	496, 642, 674
NlaIII	CATG	2 cut(s)	353, 661
NlaIV	GGNNCC	1 cut(s)	462
NmeAIII	GCCGAG	1 cut(s)	362
NmuCI	GTSAC	3 cut(s)	73, 569, 575
PaeR7I	CTCGAG	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PflFI	GACNNNGTC	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	136, 194, 591
PleI	GAGTC	3 cut(s)	137, 464, 687
PluTI	GGCGCC	1 cut(s)	464
PmaCI	CACGTG	1 cut(s)	80
PmlI	CACGTG	1 cut(s)	80
PpsI	GAGTC	3 cut(s)	137, 464, 687
Ppu21I	YACGTR	1 cut(s)	80
PpuMI	RGGWCCY	1 cut(s)	411
PshAI	GACNNNNGTC	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	552
Psp5II	RGGWCCY	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	543, 582
PspCI	CACGTG	1 cut(s)	80
PspGI	CCWGG	2 cut(s)	543, 582
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	2 cut(s)	221, 411
PspPPI	RGGWCCY	1 cut(s)	411
PspXI	VCTCGAGB	1 cut(s)	38
PstI	CTGCAG	1 cut(s)	704
PsuI	RGATCY	1 cut(s)	674
PsyI	GACNNNGTC	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	3 cut(s)	135, 193, 590
Sau3AI	GATC	3 cut(s)	496, 642, 674
Sau96I	GGNCC	2 cut(s)	221, 411
SchI	GAGTC	3 cut(s)	137, 464, 687
ScrFI	CCNGG	2 cut(s)	545, 584
SduI	GDGCHC	1 cut(s)	552
SexAI	ACCWGGT	1 cut(s)	582
SfaNI	GCATC	2 cut(s)	250, 274
SfcI	CTRYAG	1 cut(s)	700
SfoI	GGCGCC	1 cut(s)	462
Sfr274I	CTCGAG	1 cut(s)	38
SinI	GGWCC	2 cut(s)	221, 411
SlaI	CTCGAG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SsiI	CCGC	4 cut(s)	43, 64, 135, 193
SspDI	GGCGCC	1 cut(s)	460
SspMI	CTAG	3 cut(s)	371, 408, 467
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	2 cut(s)	543, 582
StyI	CCWWGG	2 cut(s)	23, 349
TaaI	ACNGT	3 cut(s)	89, 181, 575
TaiI	ACGT	3 cut(s)	11, 82, 159
TaqI	TCGA	3 cut(s)	39, 153, 489
TauI	GCSGC	2 cut(s)	137, 195
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	4 cut(s)	94, 184, 580, 676
TseFI	GTSAC	3 cut(s)	73, 569, 575
TseI	GCWGC	1 cut(s)	589
Tsp45I	GTSAC	3 cut(s)	73, 569, 575
TspDTI	ATGAA	2 cut(s)	252, 674
TspGWI	ACGGA	2 cut(s)	213, 297
TspRI	CASTG	4 cut(s)	94, 184, 580, 676
Tth111I	GACNNNGTC	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	221, 411
XhoI	CTCGAG	1 cut(s)	38
XmiI	GTMKAC	3 cut(s)	18, 34, 84
XspI	CTAG	3 cut(s)	371, 408, 467
ZraI	GACGTC	2 cut(s)	9, 157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.