Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003466

Physical Location & Seq

Genomic Coordinates Reverse (-)

3206446 .. 3208357

Gene Structure 1912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G044200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCTGCTCTTCGATCTTTCCTCGTGATCATCTGTTTTGTAGTGGTAGCTGCCACTAGTATGATGCCAACATCTGCACAACTAAGTTCTGGTTTCTACAACAAAGTGTGCCCTCAGGCACTGCCAGCTATCAGAAAAGTCGTCAAACGGGCCATCAGCCATGAGCCACGCATCGGAGCCTCTCTACTTCGCCTTCATTTCCATGACTGCTTTGTTAATGGTTGCGATGGATCGGTTCTGCTTGATGACACTGCCAACTTCACCGGTGAGAAGACTGCCTTCCCAAATCTGAATTCGATCCGGGGATTCAACGTCATCGATGATATCAAAAAAGCTGTCGACAAAGCTTGCTACAAGAGTGTGGTCTCATGTGCAGATATATTAGCTGTTGCAGCTCGTGATTCTGTATCCATTTTGGGAGGACCTGATTACGAAGTACAATTAGGAAGAAGGGATGCAAGAACTGCAAGCGTGAATGATGCAAACAGAAATCTTCCACCCCCAGTCTTCAGCTTCTCACAGCTTCTTTCTAACTTCCAAGCTCATGGACTTAACCTTAAAGACTTGATTGTGCTCTCAGCTGCCCACACCATTGGACTTGCTCGGTGTACCACCTTCCGTGCCAGGATTTACAATGATACCAACATAGACCCCAAGTTTGCAGCCTCTGCAAAATACAATTGTCCAACAACTGGAGGAGACAACAACACAAGGCCACTAGATTCAACTACAAGGCGATTCGATAACGTCTACTTTAAGGCTTTGTTACAACAAAAGGGTCTCCTCCATTCTGATCAAGAGCTCTATAAAAATAATGGTACAGATAGTGATAAGCTGGTGCTGAAATACAGCAGGAACTCGGAATCTTTTGCAAAAGACTTTGCAAATTCTATGATCAAGATGGGCAACATCAAGCCTCTCACTGGGAATAATGGAGAAGTAAGACTCAACTGCCGGAAAATCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

323

Amino Acids

35.31

Weight (kDa)

9.32

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40120 FvH4_3g40140 FvH4_3g40150 FvH4_3g40160
malus_domestica	MD03G1059000.v1.1 MD11G1061000.v1.1 MD11G1061100.v1.1 MD11G1061200.v1.1
prunus_persica	Prupe.6G044200_v2.0.a1 Prupe.6G044500_v2.0.a1 Prupe.6G044600_v2.0.a1 Prupe.6G044700_v2.0.a1 Prupe.6G044800_v2.0.a1
pyrus_communis	pycom11g05080
rosa_chinensis	RchiOBHm_Chr5g0072301 RchiOBHm_Chr5g0072331 RchiOBHm_Chr5g0072351
rosa_laevigata	RLG00000036292 RLG00000036293
rosa_multiflora	Rmu_co8350947.1_g000001 Rmu_sc0000737.1_g000016 Rmu_sc0008937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008870 Rroxscaffold_1G00008880 Rroxscaffold_1G00008900 Rroxscaffold_1G00008940 Rroxscaffold_1G00008950 Rroxscaffold_1G00008960
rosa_samantha	Rh5AG473600 Rh5BG494100 Rh5CG517800 Rh5CG518100 Rh5DG506000 Rh5DG506200
rosa_wichuraiana	Rw5G043990 Rw5G044010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccI	GTMKAC	2 cut(s)	339, 750
AclWI	GGATC	2 cut(s)	238, 292
AcsI	RAATTY	2 cut(s)	292, 886
AcuI	CTGAAG	1 cut(s)	493
AfaI	GTAC	3 cut(s)	438, 610, 820
AfiI	CCNNNNNNNGG	3 cut(s)	173, 692, 923
AgeI	ACCGGT	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	310, 726
AhlI	ACTAGT	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	623
AjuI	GAANNNNNNNTTGG	2 cut(s)	277, 309
Alw21I	GWGCWC	2 cut(s)	576, 804
Alw26I	GTCTC	3 cut(s)	370, 693, 785
AlwI	GGATC	2 cut(s)	238, 292
AlwNI	CAGNNNCTG	2 cut(s)	121, 668
AoxI	GGCC	2 cut(s)	150, 713
ApeKI	GCWGC	5 cut(s)	5, 50, 392, 581, 662
ApoI	RAATTY	2 cut(s)	292, 886
ArsI	GACNNNNNNTTYG	4 cut(s)	321, 353, 641, 673
AsiGI	ACCGGT	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	150, 422
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	253, 278
AvaII	GGWCC	1 cut(s)	422
AxyI	CCTNAGG	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	804
BauI	CACGAG	2 cut(s)	23, 396
BbsI	GAAGAC	2 cut(s)	278, 499
Bbv12I	GWGCWC	2 cut(s)	576, 804
BbvI	GCAGC	4 cut(s)	37, 404, 568, 674
BccI	CCATC	3 cut(s)	161, 221, 895
BciT130I	CCWGG	1 cut(s)	625
BciVI	GTATCC	1 cut(s)	418
BclI	TGATCA	3 cut(s)	27, 793, 894
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	3 cut(s)	370, 693, 785
BcuI	ACTAGT	1 cut(s)	56
BfaI	CTAG	2 cut(s)	57, 719
BfuI	GTATCC	1 cut(s)	418
BisI	GCNGC	5 cut(s)	6, 51, 393, 582, 663
BlsI	GCNGC	5 cut(s)	7, 52, 394, 583, 664
Bme1390I	CCNGG	2 cut(s)	302, 625
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	2 cut(s)	150, 422
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	2 cut(s)	302, 625
BmrI	ACTGGG	2 cut(s)	497, 933
BmsI	GCATC	4 cut(s)	54, 180, 445, 469
BmuI	ACTGGG	2 cut(s)	497, 933
BpiI	GAAGAC	2 cut(s)	278, 499
BpmI	CTGGAG	1 cut(s)	714
BpuMI	CCSGG	1 cut(s)	302
Bsa29I	ATCGAT	1 cut(s)	318
BsaI	GGTCTC	2 cut(s)	370, 785
BsaJI	CCNNGG	1 cut(s)	301
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 692, 923
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	3 cut(s)	503, 697, 928
Bse21I	CCTNAGG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	625
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	3 cut(s)	173, 692, 923
BseMII	CTCAG	2 cut(s)	128, 591
BseNI	ACTGG	3 cut(s)	503, 697, 928
BseRI	GAGGAG	2 cut(s)	711, 773
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	4 cut(s)	37, 404, 568, 674
BsgI	GTGCAG	2 cut(s)	60, 393
BshFI	GGCC	2 cut(s)	152, 715
BshTI	ACCGGT	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	318
BsiHKAI	GWGCWC	2 cut(s)	576, 804
BsiSI	CCGG	3 cut(s)	264, 301, 955
BslI	CCNNNNNNNGG	3 cut(s)	173, 692, 923
BsmAI	GTCTC	3 cut(s)	370, 693, 785
BsnI	GGCC	2 cut(s)	152, 715
Bso31I	GGTCTC	2 cut(s)	370, 785
Bsp1286I	GDGCHC	3 cut(s)	113, 576, 804
Bsp143I	GATC	6 cut(s)	14, 27, 230, 297, 793, 894
BspANI	GGCC	2 cut(s)	152, 715
BspCNI	CTCAG	2 cut(s)	127, 590
BspDI	ATCGAT	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	2 cut(s)	238, 292
BspQI	GCTCTTC	1 cut(s)	15
BspTNI	GGTCTC	2 cut(s)	370, 785
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	3 cut(s)	503, 697, 928
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	6 cut(s)	14, 27, 230, 297, 793, 894
BssSI	CACGAG	2 cut(s)	23, 396
Bst2BI	CACGAG	2 cut(s)	23, 396
Bst2UI	CCWGG	1 cut(s)	625
Bst6I	CTCTTC	1 cut(s)	15
BstAPI	GCANNNNNTGC	2 cut(s)	464, 668
BstC8I	GCNNGC	3 cut(s)	126, 349, 469
BstDEI	CTNAG	3 cut(s)	83, 114, 577
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	6 cut(s)	17, 30, 233, 300, 796, 897
BstMAI	GTCTC	3 cut(s)	370, 693, 785
BstMBI	GATC	6 cut(s)	14, 27, 230, 297, 793, 894
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 392, 464, 668
BstNI	CCWGG	1 cut(s)	625
BstSCI	CCNGG	2 cut(s)	300, 623
BstSLI	GKGCMC	1 cut(s)	113
BstV1I	GCAGC	4 cut(s)	37, 404, 568, 674
BstV2I	GAAGAC	2 cut(s)	278, 499
BstXI	CCANNNNNNTGG	2 cut(s)	545, 593
Bsu15I	ATCGAT	1 cut(s)	318
Bsu36I	CCTNAGG	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	152, 715
BsuTUI	ATCGAT	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	460
BtsI	GCAGTG	2 cut(s)	119, 249
BtsIMutI	CAGTG	3 cut(s)	119, 249, 921
Cac8I	GCNNGC	3 cut(s)	126, 349, 469
CaiI	CAGNNNCTG	2 cut(s)	121, 668
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	150, 422
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	3 cut(s)	437, 609, 819
CspAI	ACCGGT	1 cut(s)	263
CviAII	CATG	4 cut(s)	161, 203, 369, 545
CviQI	GTAC	3 cut(s)	437, 609, 819
DdeI	CTNAG	3 cut(s)	83, 114, 577
DpnI	GATC	6 cut(s)	16, 29, 232, 299, 795, 896
DpnII	GATC	6 cut(s)	14, 27, 230, 297, 793, 894
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	802
Eco24I	GRGCYC	1 cut(s)	804
Eco31I	GGTCTC	2 cut(s)	370, 785
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	422
Eco53kI	GAGCTC	1 cut(s)	802
Eco57I	CTGAAG	1 cut(s)	493
Eco81I	CCTNAGG	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	802
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	623
EcoRV	GATATC	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	804
FaeI	CATG	4 cut(s)	164, 206, 372, 548
FaiI	YATR	9 cut(s)	62, 162, 204, 370, 380, 546, 647, 807, 893
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	4 cut(s)	160, 202, 368, 544
FbaI	TGATCA	3 cut(s)	27, 793, 894
FblI	GTMKAC	2 cut(s)	339, 750
Fnu4HI	GCNGC	5 cut(s)	6, 51, 393, 582, 663
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	804
Fsp4HI	GCNGC	5 cut(s)	6, 51, 393, 582, 663
FspBI	CTAG	2 cut(s)	57, 719
GluI	GCNGC	5 cut(s)	6, 51, 393, 582, 663
GsuI	CTGGAG	1 cut(s)	714
HaeIII	GGCC	2 cut(s)	152, 715
HapII	CCGG	3 cut(s)	264, 301, 955
Hin1II	CATG	4 cut(s)	164, 206, 372, 548
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	6 cut(s)	306, 401, 722, 738, 863, 945
HpaII	CCGG	3 cut(s)	264, 301, 955
HphI	GGTGA	2 cut(s)	253, 278
Hpy166II	GTNNAC	3 cut(s)	340, 609, 751
Hpy188I	TCNGA	5 cut(s)	134, 176, 291, 793, 862
Hpy188III	TCNNGA	4 cut(s)	25, 398, 797, 898
Hpy8I	GTNNAC	3 cut(s)	340, 609, 751
HpyAV	CCTTC	4 cut(s)	203, 289, 444, 625
HpyCH4IV	ACGT	2 cut(s)	312, 747
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 392, 464, 668
HpyF3I	CTNAG	3 cut(s)	83, 114, 577
HpySE526I	ACGT	2 cut(s)	312, 747
Hsp92II	CATG	4 cut(s)	164, 206, 372, 548
Ksp22I	TGATCA	3 cut(s)	27, 793, 894
Kzo9I	GATC	6 cut(s)	14, 27, 230, 297, 793, 894
LguI	GCTCTTC	1 cut(s)	15
LmnI	GCTCC	1 cut(s)	176
Lsp1109I	GCAGC	4 cut(s)	37, 404, 568, 674
LweI	GCATC	4 cut(s)	54, 180, 445, 469
MaeI	CTAG	2 cut(s)	57, 719
MaeII	ACGT	2 cut(s)	312, 747
MaeIII	GTNAC	1 cut(s)	765
MalI	GATC	6 cut(s)	16, 29, 232, 299, 795, 896
MboI	GATC	6 cut(s)	14, 27, 230, 297, 793, 894
MboII	GAAGA	4 cut(s)	283, 459, 485, 499
MfeI	CAATTG	1 cut(s)	679
MhlI	GDGCHC	3 cut(s)	113, 576, 804
MluCI	AATT	5 cut(s)	292, 440, 679, 886, 964
MlyI	GAGTC	1 cut(s)	939
MmeI	TCCRAC	1 cut(s)	710
MnlI	CCTC	8 cut(s)	32, 123, 190, 413, 676, 689, 794, 927
MseI	TTAA	4 cut(s)	216, 552, 558, 756
MslI	CAYNNNNRTG	2 cut(s)	59, 201
MspA1I	CMGCKG	1 cut(s)	581
MspI	CCGG	3 cut(s)	264, 301, 955
MspR9I	CCNGG	2 cut(s)	302, 625
MunI	CAATTG	1 cut(s)	679
MvaI	CCWGG	1 cut(s)	625
MwoI	GCNNNNNNNGC	4 cut(s)	125, 392, 464, 668
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	6 cut(s)	14, 27, 230, 297, 793, 894
NlaIII	CATG	4 cut(s)	164, 206, 372, 548
NlaIV	GGNNCC	1 cut(s)	178
PciSI	GCTCTTC	1 cut(s)	15
PfeI	GAWTC	5 cut(s)	306, 401, 722, 738, 863
PflMI	CCANNNNNTGG	1 cut(s)	692
PinAI	ACCGGT	1 cut(s)	263
PkrI	GCNGC	5 cut(s)	7, 52, 394, 583, 664
PleI	GAGTC	1 cut(s)	939
PpsI	GAGTC	1 cut(s)	939
PpuMI	RGGWCCY	1 cut(s)	422
Psp124BI	GAGCTC	1 cut(s)	804
Psp5II	RGGWCCY	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	623
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	2 cut(s)	150, 422
PspPPI	RGGWCCY	1 cut(s)	422
PstNI	CAGNNNCTG	2 cut(s)	121, 668
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	3 cut(s)	438, 610, 820
RsaNI	GTAC	3 cut(s)	437, 609, 819
RseI	CAYNNNNRTG	2 cut(s)	59, 201
SacI	GAGCTC	1 cut(s)	804
SalI	GTCGAC	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	4 cut(s)	216, 552, 558, 756
SatI	GCNGC	5 cut(s)	6, 51, 393, 582, 663
Sau3AI	GATC	6 cut(s)	14, 27, 230, 297, 793, 894
Sau96I	GGNCC	2 cut(s)	150, 422
SchI	GAGTC	1 cut(s)	939
ScrFI	CCNGG	2 cut(s)	302, 625
SduI	GDGCHC	3 cut(s)	113, 576, 804
SfaNI	GCATC	4 cut(s)	54, 180, 445, 469
SgrAI	CRCCGGYG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	422
SmiMI	CAYNNNNRTG	2 cut(s)	59, 201
SpeI	ACTAGT	1 cut(s)	56
Sse9I	AATT	5 cut(s)	292, 440, 679, 886, 964
SspMI	CTAG	2 cut(s)	57, 719
SstI	GAGCTC	1 cut(s)	804
StyD4I	CCNGG	2 cut(s)	300, 623
TaiI	ACGT	2 cut(s)	315, 750
TaqI	TCGA	5 cut(s)	13, 296, 318, 339, 741
TasI	AATT	5 cut(s)	292, 440, 679, 886, 964
TatI	WGTACW	1 cut(s)	436
TfiI	GAWTC	5 cut(s)	306, 401, 722, 738, 863
Tru1I	TTAA	4 cut(s)	216, 552, 558, 756
Tru9I	TTAA	4 cut(s)	216, 552, 558, 756
TscAI	CASTG	3 cut(s)	126, 256, 928
TseI	GCWGC	5 cut(s)	5, 50, 392, 581, 662
TspDTI	ATGAA	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	608
TspRI	CASTG	3 cut(s)	126, 256, 928
Van91I	CCANNNNNTGG	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	2 cut(s)	292, 886
XmiI	GTMKAC	2 cut(s)	339, 750
XspI	CTAG	2 cut(s)	57, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.