MD03G1059000.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0003466
Physical Location & Seq
Reverse (-)
4750789 .. 4752469
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1059000.v1.1.491

Sequence Viewer

Length: 993 bp
ATGGCTTCAGCTAGTTGTCATCCATCTGTCTTCGTTTTTGTCACTACTATTTTACTTGCAGCTGCTATTGTGATGATCCCTACTTCATGCACTGCACAACTCACTTCTAATTTCTATAAGCAATCCTGCCCTCAGGCGCTGCAAATTATCAGATCAGTTGTCAAGCAAGCGATTAATCGTGAAAAGCGCATGGGAGCATCGCTACTACGTTTGCACTTCCATGACTGCTTTGTCAATGGGTGTGATGGATCAGTTTTGCTGGATGACACAGCTAACTTCAGCGGTGAGAAGACTGCGAACCCAAATCTGAACTCAATTAGAGGTTTTGACGTGGTCGATGACATTAAGGCGACTCTCAACAGAGATTGCAAGGGAAATGTGGTCTCATGCGCAGACATCTTAGCCGTGGCAGCTCGTGACTCCGTTGAGATTTTGGGAGGTCCTTCCTGTTCCTATGAAGTACAATTGGGTAGAAGAGATGCAAAAACTGCAGTCTTGAATGATGCAAACAGAGATCTTCCGCCTCCTATTTTCAACTTCTCTCAGCTTCTCTCCAATTTTCAATTTCAAGGACTAGACCTGAAAGATCTGATTCTCCTCTCAGGGGGGCACACCATTGGCCAGGCTAGGTGCACCACCTTCAGGACCAGAATTTACAATGAGACCAACATAGACCCCGACTTTGCAGCCTCGTTGCAAAAGGGCTGTCCTTCAAATGGTGGTGACAACAACTTAGCACCGATCGATTCGACTGCAGCAAACTTTGATACCGTGTACTTCAAGGCCTTACTGCAGAAAAAGGGTCTCTTCCATTCTGATCAGGAGCTCTTTAAAGGTGATGGTAGTGACAGTGATAATCTGGTGCAGTATTACGCTAACAACCCCCAGGATTTCAAAACAGATTTCGGGGCTTCCTTGATCAAGATGGGTAACATTAAGCCTCTCACTGGTTCTGATGGTGAGATAAGACTCAATTGCAGGAAAATCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

331

Amino Acids

35.88

Weight (kDa)

6.21

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 50 - 294 8.6e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
Acc16I TGCGCA 1 cut(s) 391
AciI CCGC 2 cut(s) 282, 521
AclWI GGATC 2 cut(s) 70, 256
AcoI YGGCCR 1 cut(s) 619
AcsI RAATTY 1 cut(s) 651
AcuI CTGAAG 2 cut(s) 262, 625
AfaI GTAC 2 cut(s) 462, 776
AfiI CCNNNNNNNGG 4 cut(s) 604, 642, 716, 947
AgsI TTSAA 7 cut(s) 499, 535, 563, 569, 714, 781, 895
AjiI CACGTC 1 cut(s) 331
AjnI CCWGG 2 cut(s) 621, 885
AluBI AGCT 6 cut(s) 11, 62, 272, 413, 547, 826
AluI AGCT 6 cut(s) 11, 62, 272, 413, 547, 826
Alw21I GWGCWC 2 cut(s) 635, 828
Alw26I GTCTC 3 cut(s) 388, 656, 809
Alw44I GTGCAC 1 cut(s) 631
AlwI GGATC 2 cut(s) 70, 256
AlwNI CAGNNNCTG 1 cut(s) 139
AoxI GGCC 2 cut(s) 619, 783
ApaLI GTGCAC 1 cut(s) 631
ApeKI GCWGC 6 cut(s) 59, 62, 139, 410, 686, 755
ApoI RAATTY 1 cut(s) 651
ArsI GACNNNNNNTTYG 4 cut(s) 665, 691, 697, 723
AseI ATTAAT 1 cut(s) 174
AspLEI GCGC 3 cut(s) 139, 189, 392
AspS9I GGNCC 2 cut(s) 440, 645
AsuHPI GGTGA 4 cut(s) 296, 734, 848, 971
AvaII GGWCC 2 cut(s) 440, 645
AxyI CCTNAGG 1 cut(s) 132
BaeGI GKGCMC 2 cut(s) 612, 635
BalI TGGCCA 1 cut(s) 621
BanII GRGCYC 1 cut(s) 828
BauI CACGAG 1 cut(s) 414
BbsI GAAGAC 2 cut(s) 22, 296
Bbv12I GWGCWC 2 cut(s) 635, 828
BbvI GCAGC 6 cut(s) 49, 71, 126, 422, 698, 767
BccI CCATC 5 cut(s) 31, 239, 833, 919, 950
BceAI ACGGC 1 cut(s) 389
BcgI CGANNNNNNTGC 2 cut(s) 734, 768
BciT130I CCWGG 2 cut(s) 623, 887
BclI TGATCA 2 cut(s) 817, 918
BcoDI GTCTC 3 cut(s) 388, 656, 809
BfaI CTAG 4 cut(s) 12, 575, 627, 991
BfmI CTRYAG 3 cut(s) 489, 753, 791
BfoI RGCGCY 1 cut(s) 140
BglII AGATCT 2 cut(s) 514, 586
BisI GCNGC 6 cut(s) 60, 63, 140, 411, 687, 756
BlsI GCNGC 6 cut(s) 61, 64, 141, 412, 688, 757
Bme1390I CCNGG 2 cut(s) 623, 887
Bme18I GGWCC 2 cut(s) 440, 645
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 440, 645
BmrFI CCNGG 2 cut(s) 623, 887
BmsI GCATC 3 cut(s) 206, 469, 493
BpiI GAAGAC 2 cut(s) 22, 296
Bsa29I ATCGAT 1 cut(s) 744
BsaI GGTCTC 3 cut(s) 388, 656, 809
BsaJI CCNNGG 2 cut(s) 405, 885
Bsc4I CCNNNNNNNGG 4 cut(s) 604, 642, 716, 947
Bse1I ACTGG 1 cut(s) 952
Bse21I CCTNAGG 1 cut(s) 132
BseBI CCWGG 2 cut(s) 623, 887
BseCI ATCGAT 1 cut(s) 744
BseDI CCNNGG 2 cut(s) 405, 885
BseGI GGATG 2 cut(s) 19, 268
BseLI CCNNNNNNNGG 4 cut(s) 604, 642, 716, 947
BseMII CTCAG 3 cut(s) 146, 557, 615
BseNI ACTGG 1 cut(s) 952
BseRI GAGGAG 1 cut(s) 587
BseSI GKGCMC 2 cut(s) 612, 635
BseXI GCAGC 6 cut(s) 49, 71, 126, 422, 698, 767
BsgI GTGCAG 2 cut(s) 78, 884
Bsh1285I CGRYCG 1 cut(s) 744
BshFI GGCC 2 cut(s) 621, 785
BshVI ATCGAT 1 cut(s) 744
BsiEI CGRYCG 1 cut(s) 744
BsiHKAI GWGCWC 2 cut(s) 635, 828
BslI CCNNNNNNNGG 4 cut(s) 604, 642, 716, 947
BsmAI GTCTC 3 cut(s) 388, 656, 809
BsnI GGCC 2 cut(s) 621, 785
Bso31I GGTCTC 3 cut(s) 388, 656, 809
Bsp1286I GDGCHC 3 cut(s) 612, 635, 828
Bsp143I GATC 8 cut(s) 75, 152, 248, 514, 586, 741, 817, 918
BspACI CCGC 2 cut(s) 282, 521
BspANI GGCC 2 cut(s) 621, 785
BspCNI CTCAG 3 cut(s) 145, 556, 614
BspDI ATCGAT 1 cut(s) 744
BspMAI CTGCAG 3 cut(s) 493, 757, 795
BspPI GGATC 2 cut(s) 70, 256
BspTNI GGTCTC 3 cut(s) 388, 656, 809
BsrI ACTGG 1 cut(s) 952
BssECI CCNNGG 2 cut(s) 405, 885
BssMI GATC 8 cut(s) 75, 152, 248, 514, 586, 741, 817, 918
BssSI CACGAG 1 cut(s) 414
Bst2BI CACGAG 1 cut(s) 414
Bst2UI CCWGG 2 cut(s) 623, 887
Bst4CI ACNGT 2 cut(s) 772, 851
Bst6I CTCTTC 2 cut(s) 469, 812
BstAPI GCANNNNNTGC 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 5 cut(s) 132, 400, 543, 601, 733
BstDSI CCRYGG 1 cut(s) 405
BstF5I GGATG 2 cut(s) 19, 268
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 3 cut(s) 139, 189, 392
BstKTI GATC 8 cut(s) 78, 155, 251, 517, 589, 744, 820, 921
BstMAI GTCTC 3 cut(s) 388, 656, 809
BstMBI GATC 8 cut(s) 75, 152, 248, 514, 586, 741, 817, 918
BstMCI CGRYCG 1 cut(s) 744
BstMWI GCNNNNNNNGC 2 cut(s) 410, 488
BstNI CCWGG 2 cut(s) 623, 887
BstSCI CCNGG 2 cut(s) 621, 885
BstSFI CTRYAG 3 cut(s) 489, 753, 791
BstSLI GKGCMC 2 cut(s) 612, 635
BstV1I GCAGC 6 cut(s) 49, 71, 126, 422, 698, 767
BstV2I GAAGAC 2 cut(s) 22, 296
BstX2I RGATCY 2 cut(s) 514, 586
BstYI RGATCY 2 cut(s) 514, 586
Bsu15I ATCGAT 1 cut(s) 744
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 2 cut(s) 621, 785
BsuTUI ATCGAT 1 cut(s) 744
BtgI CCRYGG 1 cut(s) 405
BtgZI GCGATG 1 cut(s) 183
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 2 cut(s) 19, 268
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 3 cut(s) 90, 856, 945
Cac8I GCNNGC 1 cut(s) 168
CaiI CAGNNNCTG 1 cut(s) 139
CfoI GCGC 3 cut(s) 139, 189, 392
Cfr13I GGNCC 2 cut(s) 440, 645
ClaI ATCGAT 1 cut(s) 744
Csp6I GTAC 2 cut(s) 461, 775
CviAII CATG 4 cut(s) 87, 190, 221, 387
CviQI GTAC 2 cut(s) 461, 775
DdeI CTNAG 5 cut(s) 132, 400, 543, 601, 733
DpnI GATC 8 cut(s) 77, 154, 250, 516, 588, 743, 819, 920
DpnII GATC 8 cut(s) 75, 152, 248, 514, 586, 741, 817, 918
DraI TTTAAA 1 cut(s) 832
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
EaeI YGGCCR 1 cut(s) 619
Eam1104I CTCTTC 2 cut(s) 469, 812
EarI CTCTTC 2 cut(s) 469, 812
EciI GGCGGA 1 cut(s) 510
Ecl136II GAGCTC 1 cut(s) 826
Eco147I AGGCCT 1 cut(s) 785
Eco24I GRGCYC 1 cut(s) 828
Eco31I GGTCTC 3 cut(s) 388, 656, 809
Eco47I GGWCC 2 cut(s) 440, 645
Eco53kI GAGCTC 1 cut(s) 826
Eco57I CTGAAG 2 cut(s) 262, 625
Eco81I CCTNAGG 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 826
EcoO109I RGGNCCY 1 cut(s) 440
EcoRII CCWGG 2 cut(s) 621, 885
EcoT38I GRGCYC 1 cut(s) 828
FaeI CATG 4 cut(s) 90, 193, 224, 390
FaiI YATR 7 cut(s) 88, 117, 191, 222, 388, 456, 671
FalI AAGNNNNNCTT 2 cut(s) 791, 823
FatI CATG 4 cut(s) 86, 189, 220, 386
FbaI TGATCA 2 cut(s) 817, 918
Fnu4HI GCNGC 6 cut(s) 60, 63, 140, 411, 687, 756
FokI GGATG 2 cut(s) 6, 275
FriOI GRGCYC 1 cut(s) 828
Fsp4HI GCNGC 6 cut(s) 60, 63, 140, 411, 687, 756
FspBI CTAG 4 cut(s) 12, 575, 627, 991
FspI TGCGCA 1 cut(s) 391
GlaI GCGC 3 cut(s) 138, 188, 391
GluI GCNGC 6 cut(s) 60, 63, 140, 411, 687, 756
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 2 cut(s) 621, 785
HhaI GCGC 3 cut(s) 139, 189, 392
Hin1II CATG 4 cut(s) 90, 193, 224, 390
Hin6I GCGC 3 cut(s) 137, 187, 390
HinP1I GCGC 3 cut(s) 137, 187, 390
HinfI GANTC 5 cut(s) 352, 419, 592, 746, 969
HphI GGTGA 4 cut(s) 296, 734, 848, 971
Hpy166II GTNNAC 2 cut(s) 633, 775
Hpy188I TCNGA 5 cut(s) 152, 309, 591, 817, 955
Hpy188III TCNNGA 6 cut(s) 179, 416, 496, 643, 821, 922
Hpy8I GTNNAC 2 cut(s) 633, 775
HpyAV CCTTC 3 cut(s) 453, 649, 720
HpyCH4III ACNGT 2 cut(s) 772, 851
HpyCH4IV ACGT 2 cut(s) 208, 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 488
HpyF3I CTNAG 5 cut(s) 132, 400, 543, 601, 733
HpySE526I ACGT 2 cut(s) 208, 330
Hsp92II CATG 4 cut(s) 90, 193, 224, 390
HspAI GCGC 3 cut(s) 137, 187, 390
Ksp22I TGATCA 2 cut(s) 817, 918
Kzo9I GATC 8 cut(s) 75, 152, 248, 514, 586, 741, 817, 918
LmnI GCTCC 2 cut(s) 194, 823
Lsp1109I GCAGC 6 cut(s) 49, 71, 126, 422, 698, 767
LweI GCATC 3 cut(s) 206, 469, 493
MaeI CTAG 4 cut(s) 12, 575, 627, 991
MaeII ACGT 2 cut(s) 208, 330
MaeIII GTNAC 5 cut(s) 40, 416, 722, 845, 929
MalI GATC 8 cut(s) 77, 154, 250, 516, 588, 743, 819, 920
MboI GATC 8 cut(s) 75, 152, 248, 514, 586, 741, 817, 918
MboII GAAGA 5 cut(s) 22, 301, 486, 509, 799
MfeI CAATTG 2 cut(s) 464, 973
MflI RGATCY 2 cut(s) 514, 586
MhlI GDGCHC 3 cut(s) 612, 635, 828
MlsI TGGCCA 1 cut(s) 621
MluCI AATT 8 cut(s) 109, 144, 315, 464, 556, 563, 651, 973
MluNI TGGCCA 1 cut(s) 621
MlyI GAGTC 3 cut(s) 346, 413, 963
MnlI CCTC 7 cut(s) 141, 314, 431, 534, 608, 700, 951
Mox20I TGGCCA 1 cut(s) 621
MscI TGGCCA 1 cut(s) 621
MseI TTAA 4 cut(s) 174, 345, 831, 936
MslI CAYNNNNRTG 1 cut(s) 219
Msp20I TGGCCA 1 cut(s) 621
MspA1I CMGCKG 2 cut(s) 62, 282
MspR9I CCNGG 2 cut(s) 623, 887
MunI CAATTG 2 cut(s) 464, 973
MvaI CCWGG 2 cut(s) 623, 887
MwoI GCNNNNNNNGC 2 cut(s) 410, 488
NdeII GATC 8 cut(s) 75, 152, 248, 514, 586, 741, 817, 918
NlaIII CATG 4 cut(s) 90, 193, 224, 390
NmuCI GTSAC 4 cut(s) 40, 416, 722, 845
NsbI TGCGCA 1 cut(s) 391
PceI AGGCCT 1 cut(s) 785
PfeI GAWTC 2 cut(s) 592, 746
PflFI GACNNNGTC 1 cut(s) 332
PkrI GCNGC 6 cut(s) 61, 64, 141, 412, 688, 757
Ple19I CGATCG 1 cut(s) 744
PleI GAGTC 3 cut(s) 346, 413, 963
PpsI GAGTC 3 cut(s) 346, 413, 963
PpuMI RGGWCCY 1 cut(s) 440
PshBI ATTAAT 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 828
Psp5II RGGWCCY 1 cut(s) 440
Psp6I CCWGG 2 cut(s) 621, 885
PspGI CCWGG 2 cut(s) 621, 885
PspPI GGNCC 2 cut(s) 440, 645
PspPPI RGGWCCY 1 cut(s) 440
PstI CTGCAG 3 cut(s) 493, 757, 795
PstNI CAGNNNCTG 1 cut(s) 139
PsuI RGATCY 2 cut(s) 514, 586
PsyI GACNNNGTC 1 cut(s) 332
PvuI CGATCG 1 cut(s) 744
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 2 cut(s) 462, 776
RsaNI GTAC 2 cut(s) 461, 775
RseI CAYNNNNRTG 1 cut(s) 219
SacI GAGCTC 1 cut(s) 828
SaqAI TTAA 4 cut(s) 174, 345, 831, 936
SatI GCNGC 6 cut(s) 60, 63, 140, 411, 687, 756
Sau3AI GATC 8 cut(s) 75, 152, 248, 514, 586, 741, 817, 918
Sau96I GGNCC 2 cut(s) 440, 645
SchI GAGTC 3 cut(s) 346, 413, 963
ScrFI CCNGG 2 cut(s) 623, 887
SduI GDGCHC 3 cut(s) 612, 635, 828
SfaNI GCATC 3 cut(s) 206, 469, 493
SfcI CTRYAG 3 cut(s) 489, 753, 791
SinI GGWCC 2 cut(s) 440, 645
SmiMI CAYNNNNRTG 1 cut(s) 219
Sse9I AATT 8 cut(s) 109, 144, 315, 464, 556, 563, 651, 973
SseBI AGGCCT 1 cut(s) 785
SsiI CCGC 2 cut(s) 282, 521
SspMI CTAG 4 cut(s) 12, 575, 627, 991
SstI GAGCTC 1 cut(s) 828
StuI AGGCCT 1 cut(s) 785
StyD4I CCNGG 2 cut(s) 621, 885
TaaI ACNGT 2 cut(s) 772, 851
TaiI ACGT 2 cut(s) 211, 333
TaqI TCGA 3 cut(s) 336, 744, 749
TasI AATT 8 cut(s) 109, 144, 315, 464, 556, 563, 651, 973
TatI WGTACW 2 cut(s) 460, 774
TfiI GAWTC 2 cut(s) 592, 746
Tru1I TTAA 4 cut(s) 174, 345, 831, 936
Tru9I TTAA 4 cut(s) 174, 345, 831, 936
TscAI CASTG 3 cut(s) 97, 856, 952
TseFI GTSAC 4 cut(s) 40, 416, 722, 845
TseI GCWGC 6 cut(s) 59, 62, 139, 410, 686, 755
Tsp45I GTSAC 4 cut(s) 40, 416, 722, 845
TspDTI ATGAA 2 cut(s) 75, 471
TspGWI ACGGA 1 cut(s) 412
TspRI CASTG 3 cut(s) 97, 856, 952
Tth111I GACNNNGTC 1 cut(s) 332
VneI GTGCAC 1 cut(s) 631
VpaK11BI GGWCC 2 cut(s) 440, 645
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 1 cut(s) 651
XspI CTAG 4 cut(s) 12, 575, 627, 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.