Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003466

Physical Location & Seq

Genomic Coordinates Forward (+)

79133786 .. 79135251

Gene Structure 1466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG506200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCTTCTCTTCGATCTTTCCTAGTCTGTATTATAGTTTTAGCTGCCATTGTTATAACACCATCGTCTGCACAACTAAGTGCTGGCTTCTACCACAAAGTGTGTCCTCAGGCACTTCCAGCCATCAGAAAAATTGTCCGTCAAGCTGTCAGAAATGAACCGCGTATGGGAGCTTCTCTACTGCGTTTGCACTTCCACGATTGTTTTGTTAACGGTTGCGATGGATCAGTTCTGCTAGATGACACTTCGACGTTCACTGGTGAGAAGACAGCCGGACCAAATGCCGGCTCAATCAGAGGATTCCAGGTGATTGACCAGATCAAAGCAGCTGTCGACAAAGCTTGTAAGGGTAGTGTTGTCTCATGCGCTGATATATTAGCCGTTGCAGCTCGTGATTCTGTATACCTTCTAGGAGGTCCTGAGTACAATGTCCAACTGGGCAGACGAGATGCAACAACAGCAAGCACAAATGATGCGAACAGGAACCTGCCTCCCCCATTTTTCAGCTTCTCACAGCTTCTATCTAACTTCCAATCTCATGGTCTTGACCTCAAAGACTTAGTACTCCTCTCAGCTGCTCACACCATTGGACTTGCTCGCTGCACTACCTTCAGAGATAGAATTTACAATGACACCAACATAAACGCCAAATTTGCAGCTTCTGCTAAACGAAACTGCCCGTCAAATGGTGGAGATAACAACTTACAGCCACTCGATGCAACCACGAAGAAATTTGATACAGTGTATTTTAGTTCCTTGTTGAAATCAAAGGGTCTCCTTCACTCTGATCAAGAGTTGTTCAAGGGCGATGGGAGTGACAGTGATAAGCTGGTGAAACACTACAGCGTGAGCCCATCTGATTTTTGGAAAGACTTTTCTGCTTCAATGATCAAGATGGGTAATATAAAGCCTCTTACTGGAAATGCTGGTGAAGTGAGACTCAACTGTAGGAAGATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

320

Amino Acids

34.62

Weight (kDa)

9.11

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	42 - 282	2.9e-82	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40120 FvH4_3g40140 FvH4_3g40150 FvH4_3g40160
malus_domestica	MD03G1059000.v1.1 MD11G1061000.v1.1 MD11G1061100.v1.1 MD11G1061200.v1.1
prunus_persica	Prupe.6G044200_v2.0.a1 Prupe.6G044500_v2.0.a1 Prupe.6G044600_v2.0.a1 Prupe.6G044700_v2.0.a1 Prupe.6G044800_v2.0.a1
pyrus_communis	pycom11g05080
rosa_chinensis	RchiOBHm_Chr5g0072301 RchiOBHm_Chr5g0072331 RchiOBHm_Chr5g0072351
rosa_laevigata	RLG00000036292 RLG00000036293
rosa_multiflora	Rmu_co8350947.1_g000001 Rmu_sc0000737.1_g000016 Rmu_sc0008937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008870 Rroxscaffold_1G00008880 Rroxscaffold_1G00008900 Rroxscaffold_1G00008940 Rroxscaffold_1G00008950 Rroxscaffold_1G00008960
rosa_samantha	Rh5AG473600 Rh5BG494100 Rh5CG517800 Rh5CG518100 Rh5DG506000 Rh5DG506200
rosa_wichuraiana	Rw5G043990 Rw5G044010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	495
AccI	GTMKAC	2 cut(s)	333, 402
AccII	CGCG	1 cut(s)	163
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	3 cut(s)	621, 650, 731
AcuI	CTGAAG	1 cut(s)	595
AdeI	CACNNNGTG	1 cut(s)	100
AfaI	GTAC	2 cut(s)	425, 564
AfiI	CCNNNNNNNGG	4 cut(s)	167, 284, 686, 917
AgsI	TTSAA	3 cut(s)	763, 802, 885
AjnI	CCWGG	1 cut(s)	303
Alw26I	GTCTC	3 cut(s)	364, 779, 931
AlwI	GGATC	1 cut(s)	232
AlwNI	CAGNNNCTG	1 cut(s)	662
ApeKI	GCWGC	6 cut(s)	44, 326, 386, 575, 600, 656
ApoI	RAATTY	3 cut(s)	621, 650, 731
ArsI	GACNNNNNNTTYG	2 cut(s)	315, 347
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	275, 416
AsuHPI	GGTGA	4 cut(s)	272, 319, 844, 941
AvaII	GGWCC	2 cut(s)	275, 416
AxyI	CCTNAGG	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	854
BarI	GAAGNNNNNNTAC	2 cut(s)	157, 189
BauI	CACGAG	1 cut(s)	390
BbsI	GAAGAC	1 cut(s)	272
BbvI	GCAGC	6 cut(s)	31, 338, 398, 562, 587, 668
BccI	CCATC	6 cut(s)	70, 131, 215, 803, 862, 889
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	305
BclI	TGATCA	2 cut(s)	787, 888
BcoDI	GTCTC	3 cut(s)	364, 779, 931
BfaI	CTAG	3 cut(s)	23, 236, 410
BfmI	CTRYAG	2 cut(s)	841, 946
BfuAI	ACCTGC	1 cut(s)	495
BisI	GCNGC	6 cut(s)	45, 327, 387, 576, 601, 657
BlsI	GCNGC	6 cut(s)	46, 328, 388, 577, 602, 658
BmcAI	AGTACT	1 cut(s)	564
Bme1390I	CCNGG	1 cut(s)	305
Bme18I	GGWCC	2 cut(s)	275, 416
BmgT120I	GGNCC	2 cut(s)	275, 416
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	1 cut(s)	305
BmrI	ACTGGG	1 cut(s)	446
BmsI	GCATC	3 cut(s)	439, 463, 706
BmuI	ACTGGG	1 cut(s)	446
BpiI	GAAGAC	1 cut(s)	272
BsaI	GGTCTC	1 cut(s)	779
BsaXI	ACNNNNNCTCC	2 cut(s)	805, 835
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 284, 686, 917
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	3 cut(s)	262, 441, 922
Bse21I	CCTNAGG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	305
BseLI	CCNNNNNNNGG	4 cut(s)	167, 284, 686, 917
BseMII	CTCAG	3 cut(s)	122, 411, 585
BseNI	ACTGG	3 cut(s)	262, 441, 922
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	6 cut(s)	31, 338, 398, 562, 587, 668
BsgI	GTGCAG	2 cut(s)	54, 586
Bsh1236I	CGCG	1 cut(s)	163
BsiSI	CCGG	2 cut(s)	273, 285
BslI	CCNNNNNNNGG	4 cut(s)	167, 284, 686, 917
BsmAI	GTCTC	3 cut(s)	364, 779, 931
Bso31I	GGTCTC	1 cut(s)	779
Bsp1286I	GDGCHC	1 cut(s)	854
Bsp143I	GATC	6 cut(s)	14, 224, 318, 787, 888, 954
BspACI	CCGC	1 cut(s)	161
BspCNI	CTCAG	3 cut(s)	121, 412, 584
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	485
BspMI	ACCTGC	1 cut(s)	495
BspPI	GGATC	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	779
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	3 cut(s)	262, 441, 922
BssAI	RCCGGY	1 cut(s)	284
BssMI	GATC	6 cut(s)	14, 224, 318, 787, 888, 954
BssNAI	GTATAC	1 cut(s)	403
BssSI	CACGAG	1 cut(s)	390
Bst1107I	GTATAC	1 cut(s)	403
Bst2BI	CACGAG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	4 cut(s)	215, 742, 821, 947
Bst6I	CTCTTC	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstC8I	GCNNGC	4 cut(s)	85, 286, 463, 598
BstDEI	CTNAG	5 cut(s)	77, 108, 420, 559, 571
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	6 cut(s)	17, 227, 321, 790, 891, 957
BstMAI	GTCTC	3 cut(s)	364, 779, 931
BstMBI	GATC	6 cut(s)	14, 224, 318, 787, 888, 954
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 386, 458, 653, 662
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	2 cut(s)	841, 946
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	6 cut(s)	31, 338, 398, 562, 587, 668
BstV2I	GAAGAC	1 cut(s)	272
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstZ17I	GTATAC	1 cut(s)	403
Bsu36I	CCTNAGG	1 cut(s)	108
BtgZI	GCGATG	2 cut(s)	234, 822
BtsIMutI	CAGTG	3 cut(s)	255, 747, 826
BveI	ACCTGC	1 cut(s)	495
Cac8I	GCNNGC	4 cut(s)	85, 286, 463, 598
CaiI	CAGNNNCTG	1 cut(s)	662
CfoI	GCGC	1 cut(s)	368
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	275, 416
Csp6I	GTAC	2 cut(s)	424, 563
CviAII	CATG	2 cut(s)	363, 539
CviQI	GTAC	2 cut(s)	424, 563
DdeI	CTNAG	5 cut(s)	77, 108, 420, 559, 571
DpnI	GATC	6 cut(s)	16, 226, 320, 789, 890, 956
DpnII	GATC	6 cut(s)	14, 224, 318, 787, 888, 954
DraIII	CACNNNGTG	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	854
Eco31I	GGTCTC	1 cut(s)	779
Eco47I	GGWCC	2 cut(s)	275, 416
Eco57I	CTGAAG	1 cut(s)	595
Eco81I	CCTNAGG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	854
FaeI	CATG	2 cut(s)	366, 542
FaiI	YATR	9 cut(s)	35, 56, 167, 364, 374, 403, 540, 641, 905
FatI	CATG	2 cut(s)	362, 538
FbaI	TGATCA	2 cut(s)	787, 888
FblI	GTMKAC	2 cut(s)	333, 402
Fnu4HI	GCNGC	6 cut(s)	45, 327, 387, 576, 601, 657
FriOI	GRGCYC	1 cut(s)	854
Fsp4HI	GCNGC	6 cut(s)	45, 327, 387, 576, 601, 657
FspBI	CTAG	3 cut(s)	23, 236, 410
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	6 cut(s)	45, 327, 387, 576, 601, 657
HapII	CCGG	2 cut(s)	273, 285
HhaI	GCGC	1 cut(s)	368
Hin1II	CATG	2 cut(s)	366, 542
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HincII	GTYRAC	2 cut(s)	211, 334
HindII	GTYRAC	2 cut(s)	211, 334
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	3 cut(s)	300, 395, 939
HpaI	GTTAAC	1 cut(s)	211
HpaII	CCGG	2 cut(s)	273, 285
HphI	GGTGA	4 cut(s)	272, 319, 844, 941
Hpy166II	GTNNAC	4 cut(s)	211, 255, 334, 403
Hpy188I	TCNGA	6 cut(s)	128, 152, 296, 614, 787, 859
Hpy188III	TCNNGA	5 cut(s)	392, 419, 545, 791, 892
Hpy8I	GTNNAC	4 cut(s)	211, 255, 334, 403
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	416, 619, 788
HpyCH4III	ACNGT	4 cut(s)	215, 742, 821, 947
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	7 cut(s)	71, 190, 386, 452, 603, 656, 719
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 386, 458, 653, 662
HpyF3I	CTNAG	5 cut(s)	77, 108, 420, 559, 571
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	366, 542
HspAI	GCGC	1 cut(s)	366
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Ksp22I	TGATCA	2 cut(s)	787, 888
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	6 cut(s)	14, 224, 318, 787, 888, 954
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	6 cut(s)	31, 338, 398, 562, 587, 668
LweI	GCATC	3 cut(s)	439, 463, 706
MaeI	CTAG	3 cut(s)	23, 236, 410
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	815
MalI	GATC	6 cut(s)	16, 226, 320, 789, 890, 956
MboI	GATC	6 cut(s)	14, 224, 318, 787, 888, 954
MboII	GAAGA	2 cut(s)	277, 739
MfeI	CAATTG	1 cut(s)	958
MhlI	GDGCHC	1 cut(s)	854
MluCI	AATT	5 cut(s)	132, 621, 650, 731, 958
MlyI	GAGTC	1 cut(s)	933
MmeI	TCCRAC	1 cut(s)	457
MnlI	CCTC	7 cut(s)	117, 290, 407, 501, 560, 578, 921
MroNI	GCCGGC	1 cut(s)	284
MseI	TTAA	1 cut(s)	210
MspA1I	CMGCKG	2 cut(s)	329, 575
MspI	CCGG	2 cut(s)	273, 285
MspR9I	CCNGG	1 cut(s)	305
MunI	CAATTG	1 cut(s)	958
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	5 cut(s)	119, 386, 458, 653, 662
NaeI	GCCGGC	1 cut(s)	286
NdeII	GATC	6 cut(s)	14, 224, 318, 787, 888, 954
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	2 cut(s)	366, 542
NlaIV	GGNNCC	1 cut(s)	485
NmuCI	GTSAC	1 cut(s)	815
PdiI	GCCGGC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	300, 395
PkrI	GCNGC	6 cut(s)	46, 328, 388, 577, 602, 658
PleI	GAGTC	1 cut(s)	933
PpsI	GAGTC	1 cut(s)	933
PpuMI	RGGWCCY	1 cut(s)	416
PsiI	TTATAA	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	2 cut(s)	275, 416
PspPPI	RGGWCCY	1 cut(s)	416
PstNI	CAGNNNCTG	1 cut(s)	662
PvuII	CAGCTG	2 cut(s)	329, 575
RsaI	GTAC	2 cut(s)	425, 564
RsaNI	GTAC	2 cut(s)	424, 563
SalI	GTCGAC	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	6 cut(s)	45, 327, 387, 576, 601, 657
Sau3AI	GATC	6 cut(s)	14, 224, 318, 787, 888, 954
Sau96I	GGNCC	2 cut(s)	275, 416
ScaI	AGTACT	1 cut(s)	564
SchI	GAGTC	1 cut(s)	933
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	854
SfaNI	GCATC	3 cut(s)	439, 463, 706
SfcI	CTRYAG	2 cut(s)	841, 946
SinI	GGWCC	2 cut(s)	275, 416
Sse9I	AATT	5 cut(s)	132, 621, 650, 731, 958
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	3 cut(s)	23, 236, 410
StyD4I	CCNGG	1 cut(s)	303
TaaI	ACNGT	4 cut(s)	215, 742, 821, 947
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	4 cut(s)	13, 248, 333, 714
TasI	AATT	5 cut(s)	132, 621, 650, 731, 958
TatI	WGTACW	2 cut(s)	423, 562
TfiI	GAWTC	2 cut(s)	300, 395
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	3 cut(s)	262, 747, 826
TseFI	GTSAC	1 cut(s)	815
TseI	GCWGC	6 cut(s)	44, 326, 386, 575, 600, 656
Tsp45I	GTSAC	1 cut(s)	815
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	3 cut(s)	262, 747, 826
VpaK11BI	GGWCC	2 cut(s)	275, 416
XapI	RAATTY	3 cut(s)	621, 650, 731
XcmI	CCANNNNNNNNNTGG	1 cut(s)	861
XmiI	GTMKAC	2 cut(s)	333, 402
XspI	CTAG	3 cut(s)	23, 236, 410
ZrmI	AGTACT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.