FvH4_3g40150

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003466
Physical Location & Seq
Forward (+)
33943830 .. 33945430
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40150.t1

Sequence Viewer

Length: 975 bp
ATGGCTGCTCTTCGATTCTCTGCCCTACTGTTCTTCATTGCTTTTGTAGCAACAACCAGTTTGATACCAACTTCTGCAAAACTAACCGCGAACTTTTACAACAAAGTGTGTCCTCAAGCACTTCCGACCATCAGAAGAGTTGTTAAGCAGGCCATTCATCGTGAGCCTCGCATCGGAGCGTCTCTACTACGTTTGCATTTCCATGATTGCTTTGTAAATGGCTGCGATGGATCAATTCTACTTGACGACGCTGCCAAGTTCACAGGGGAGAAGACAGCTCTCCCAAATGCGAATTCAGTCAGGGGATTCAATGTGATCGATGATATTAAAAAGGCGGTGAACAAAGCTTGCAAGAGAAATGTGGTCTCATGTGCCGATATATTAGCTGTTGCTGCTCGTGATTCTGTAAACATTCTACAAGGCCCTCAATACAAAGTACTATTAGGTAGAAGGGATGCAAGAAATGCAAGCCTAAACGATGCCAACAGAAACCTTCCTCCCCCATTTTTCAGCTTCGCACAGCTTCTCTCCAACTTCCAATCTCATGGTCTTAACCTCAAGGACTTGGTTGTCCTCTCAGCTGCTCACACCATTGGACAAGCTCGGTGCACCACCTTCAAACAAAGGATCTACAATGACACCAACATAGACCCCAAGTTTGCGGCCTTTGCTAAAAAGAATTGCCCATCAAGTGGTGGAGATGACAAGATAGAGCCACTCGATGCAACTCCGAGGAGATTCGATACTGTGTACTTCAAATCTTTGTTGAAAAACAAGGGTCTCCTTCATTCTGATCAAGAGCTGTTTAAGGGAAATGGCAGTGCAAGTGATAAGCTGGTGCATCATTACAGTAGTCACTCGTCTGCTTTCGGGAAAGACTTTTCGAAATCGATGATCAAGATGGGAAACATGAAGCCTCTTACTGGGACTGCTGGGGAAGTAAGACTCAATTGCAGGAAAATCAATAATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

325

Amino Acids

35.6

Weight (kDa)

9.8

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 284 2.4e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 569
AccB7I CCANNNNNTGG 1 cut(s) 692
AccII CGCG 1 cut(s) 89
AciI CCGC 3 cut(s) 87, 335, 662
AclWI GGATC 2 cut(s) 238, 635
AcsI RAATTY 1 cut(s) 292
AfaI GTAC 2 cut(s) 438, 752
AfiI CCNNNNNNNGG 3 cut(s) 173, 692, 923
AgsI TTSAA 4 cut(s) 310, 619, 757, 769
AjuI GAANNNNNNNTTGG 2 cut(s) 277, 309
AluBI AGCT 9 cut(s) 278, 347, 386, 513, 523, 581, 602, 802, 835
AluI AGCT 9 cut(s) 278, 347, 386, 513, 523, 581, 602, 802, 835
Alw21I GWGCWC 1 cut(s) 611
Alw26I GTCTC 3 cut(s) 186, 370, 785
Alw44I GTGCAC 1 cut(s) 607
AlwI GGATC 2 cut(s) 238, 635
AoxI GGCC 3 cut(s) 150, 421, 663
ApaLI GTGCAC 1 cut(s) 607
ApeKI GCWGC 5 cut(s) 5, 222, 251, 392, 581
ApoI RAATTY 1 cut(s) 292
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
AspS9I GGNCC 1 cut(s) 422
AsuHPI GGTGA 1 cut(s) 349
AsuII TTCGAA 1 cut(s) 884
BaeGI GKGCMC 1 cut(s) 611
BauI CACGAG 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 611
BbvI GCAGC 4 cut(s) 209, 238, 379, 568
BccI CCATC 4 cut(s) 137, 221, 694, 895
BclI TGATCA 2 cut(s) 793, 894
BcoDI GTCTC 3 cut(s) 186, 370, 785
BisI GCNGC 6 cut(s) 6, 223, 252, 393, 582, 663
BlsI GCNGC 6 cut(s) 7, 224, 253, 394, 583, 664
BmcAI AGTACT 1 cut(s) 438
BmgT120I GGNCC 1 cut(s) 422
BmrI ACTGGG 1 cut(s) 933
BmsI GCATC 5 cut(s) 180, 445, 469, 712, 850
BmuI ACTGGG 1 cut(s) 933
BpiI GAAGAC 1 cut(s) 278
Bpu14I TTCGAA 1 cut(s) 884
BpuEI CTTGAG 2 cut(s) 99, 542
Bsa29I ATCGAT 2 cut(s) 318, 890
BsaI GGTCTC 2 cut(s) 370, 785
BsaJI CCNNGG 1 cut(s) 731
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 692, 923
Bse1I ACTGG 2 cut(s) 57, 928
Bse3DI GCAATG 1 cut(s) 36
BseCI ATCGAT 2 cut(s) 318, 890
BseDI CCNNGG 1 cut(s) 731
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 3 cut(s) 173, 692, 923
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 591
BseNI ACTGG 2 cut(s) 57, 928
BseRI GAGGAG 1 cut(s) 748
BseSI GKGCMC 1 cut(s) 611
BseXI GCAGC 4 cut(s) 209, 238, 379, 568
BseYI CCCAGC 1 cut(s) 932
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 3 cut(s) 152, 423, 665
BshVI ATCGAT 2 cut(s) 318, 890
BsiHKAI GWGCWC 1 cut(s) 611
BslFI GGGAC 1 cut(s) 940
BslI CCNNNNNNNGG 3 cut(s) 173, 692, 923
BsmAI GTCTC 3 cut(s) 186, 370, 785
BsmBI CGTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 940
BsnI GGCC 3 cut(s) 152, 423, 665
Bso31I GGTCTC 2 cut(s) 370, 785
Bsp119I TTCGAA 1 cut(s) 884
Bsp1286I GDGCHC 1 cut(s) 611
Bsp143I GATC 5 cut(s) 230, 315, 627, 793, 894
BspACI CCGC 3 cut(s) 87, 335, 662
BspANI GGCC 3 cut(s) 152, 423, 665
BspCNI CTCAG 1 cut(s) 590
BspDI ATCGAT 2 cut(s) 318, 890
BspFNI CGCG 1 cut(s) 89
BspPI GGATC 2 cut(s) 238, 635
BspQI GCTCTTC 1 cut(s) 15
BspT104I TTCGAA 1 cut(s) 884
BspTNI GGTCTC 2 cut(s) 370, 785
BsrDI GCAATG 1 cut(s) 36
BsrI ACTGG 2 cut(s) 57, 928
BssECI CCNNGG 1 cut(s) 731
BssMI GATC 5 cut(s) 230, 315, 627, 793, 894
BssSI CACGAG 1 cut(s) 396
Bst2BI CACGAG 1 cut(s) 396
Bst4CI ACNGT 3 cut(s) 30, 748, 851
Bst6I CTCTTC 2 cut(s) 15, 130
BstAPI GCANNNNNTGC 1 cut(s) 464
BstBI TTCGAA 1 cut(s) 884
BstC8I GCNNGC 3 cut(s) 150, 349, 469
BstDEI CTNAG 1 cut(s) 577
BstF5I GGATG 1 cut(s) 460
BstFNI CGCG 1 cut(s) 89
BstKTI GATC 5 cut(s) 233, 318, 630, 796, 897
BstMAI GTCTC 3 cut(s) 186, 370, 785
BstMBI GATC 5 cut(s) 230, 315, 627, 793, 894
BstMWI GCNNNNNNNGC 4 cut(s) 47, 392, 464, 668
BstSLI GKGCMC 1 cut(s) 611
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 4 cut(s) 209, 238, 379, 568
BstV2I GAAGAC 1 cut(s) 278
BstX2I RGATCY 1 cut(s) 627
BstXI CCANNNNNNTGG 1 cut(s) 545
BstYI RGATCY 1 cut(s) 627
Bsu15I ATCGAT 2 cut(s) 318, 890
BsuRI GGCC 3 cut(s) 152, 423, 665
BsuTUI ATCGAT 2 cut(s) 318, 890
BtgZI GCGATG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 460
BtsI GCAGTG 1 cut(s) 826
BtsIMutI CAGTG 1 cut(s) 826
Cac8I GCNNGC 3 cut(s) 150, 349, 469
Cfr13I GGNCC 1 cut(s) 422
ClaI ATCGAT 2 cut(s) 318, 890
CseI GACGC 2 cut(s) 168, 257
Csp6I GTAC 2 cut(s) 437, 751
CviAII CATG 4 cut(s) 203, 369, 545, 910
CviQI GTAC 2 cut(s) 437, 751
DdeI CTNAG 1 cut(s) 577
DpnI GATC 5 cut(s) 232, 317, 629, 795, 896
DpnII GATC 5 cut(s) 230, 315, 627, 793, 894
DrdI GACNNNNNNGTC 1 cut(s) 569
DseDI GACNNNNNNGTC 1 cut(s) 569
Eam1104I CTCTTC 2 cut(s) 15, 130
EarI CTCTTC 2 cut(s) 15, 130
Eco31I GGTCTC 2 cut(s) 370, 785
EcoO109I RGGNCCY 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 292
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 4 cut(s) 206, 372, 548, 913
FaiI YATR 6 cut(s) 204, 370, 380, 546, 647, 911
FaqI GGGAC 1 cut(s) 940
FatI CATG 4 cut(s) 202, 368, 544, 909
FbaI TGATCA 2 cut(s) 793, 894
Fnu4HI GCNGC 6 cut(s) 6, 223, 252, 393, 582, 663
FokI GGATG 1 cut(s) 467
Fsp4HI GCNGC 6 cut(s) 6, 223, 252, 393, 582, 663
GluI GCNGC 6 cut(s) 6, 223, 252, 393, 582, 663
GsaI CCCAGC 1 cut(s) 936
HaeIII GGCC 3 cut(s) 152, 423, 665
HgaI GACGC 2 cut(s) 168, 257
Hin1II CATG 4 cut(s) 206, 372, 548, 913
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 5 cut(s) 15, 306, 401, 738, 945
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 5 cut(s) 261, 340, 409, 609, 751
Hpy188I TCNGA 5 cut(s) 126, 134, 176, 732, 793
Hpy188III TCNNGA 5 cut(s) 161, 398, 797, 871, 898
Hpy8I GTNNAC 5 cut(s) 261, 340, 409, 609, 751
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 4 cut(s) 444, 503, 625, 794
HpyCH4III ACNGT 3 cut(s) 30, 748, 851
HpyCH4IV ACGT 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 392, 464, 668
HpyF3I CTNAG 1 cut(s) 577
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 4 cut(s) 206, 372, 548, 913
Ksp22I TGATCA 2 cut(s) 793, 894
Kzo9I GATC 5 cut(s) 230, 315, 627, 793, 894
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 8 cut(s) 70, 134, 249, 286, 821, 909, 918, 940
Lsp1109I GCAGC 4 cut(s) 209, 238, 379, 568
LweI GCATC 5 cut(s) 180, 445, 469, 712, 850
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 1 cut(s) 854
MalI GATC 5 cut(s) 232, 317, 629, 795, 896
MboI GATC 5 cut(s) 230, 315, 627, 793, 894
MboII GAAGA 3 cut(s) 25, 147, 283
MfeI CAATTG 1 cut(s) 949
MflI RGATCY 1 cut(s) 627
MhlI GDGCHC 1 cut(s) 611
MluCI AATT 4 cut(s) 234, 292, 679, 949
MlyI GAGTC 1 cut(s) 939
MmeI TCCRAC 2 cut(s) 149, 555
MnlI CCTC 8 cut(s) 123, 177, 435, 507, 566, 584, 726, 927
MseI TTAA 4 cut(s) 144, 327, 552, 807
MslI CAYNNNNRTG 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 581
MunI CAATTG 1 cut(s) 949
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 4 cut(s) 47, 392, 464, 668
NdeII GATC 5 cut(s) 230, 315, 627, 793, 894
NlaIII CATG 4 cut(s) 206, 372, 548, 913
NmuCI GTSAC 1 cut(s) 854
NspV TTCGAA 1 cut(s) 884
PciSI GCTCTTC 1 cut(s) 15
PfeI GAWTC 4 cut(s) 15, 306, 401, 738
PflMI CCANNNNNTGG 1 cut(s) 692
PkrI GCNGC 6 cut(s) 7, 224, 253, 394, 583, 664
PleI GAGTC 1 cut(s) 939
PpsI GAGTC 1 cut(s) 939
PspFI CCCAGC 1 cut(s) 932
PspPI GGNCC 1 cut(s) 422
PsuI RGATCY 1 cut(s) 627
PvuII CAGCTG 1 cut(s) 581
RsaI GTAC 2 cut(s) 438, 752
RsaNI GTAC 2 cut(s) 437, 751
RseI CAYNNNNRTG 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 4 cut(s) 144, 327, 552, 807
SatI GCNGC 6 cut(s) 6, 223, 252, 393, 582, 663
Sau3AI GATC 5 cut(s) 230, 315, 627, 793, 894
Sau96I GGNCC 1 cut(s) 422
ScaI AGTACT 1 cut(s) 438
SchI GAGTC 1 cut(s) 939
SduI GDGCHC 1 cut(s) 611
SfaNI GCATC 5 cut(s) 180, 445, 469, 712, 850
SfuI TTCGAA 1 cut(s) 884
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 2 cut(s) 114, 557
SmoI CTYRAG 2 cut(s) 114, 557
Sse9I AATT 4 cut(s) 234, 292, 679, 949
SsiI CCGC 3 cut(s) 87, 335, 662
TaaI ACNGT 3 cut(s) 30, 748, 851
TaiI ACGT 1 cut(s) 193
TaqI TCGA 6 cut(s) 13, 318, 720, 741, 884, 890
TasI AATT 4 cut(s) 234, 292, 679, 949
TatI WGTACW 2 cut(s) 436, 750
TauI GCSGC 1 cut(s) 665
TfiI GAWTC 4 cut(s) 15, 306, 401, 738
Tru1I TTAA 4 cut(s) 144, 327, 552, 807
Tru9I TTAA 4 cut(s) 144, 327, 552, 807
TscAI CASTG 1 cut(s) 826
TseFI GTSAC 1 cut(s) 854
TseI GCWGC 5 cut(s) 5, 222, 251, 392, 581
Tsp45I GTSAC 1 cut(s) 854
TspDTI ATGAA 4 cut(s) 25, 146, 776, 926
TspRI CASTG 1 cut(s) 826
Van91I CCANNNNNTGG 1 cut(s) 692
VneI GTGCAC 1 cut(s) 607
XapI RAATTY 1 cut(s) 292
ZrmI AGTACT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.