RchiOBHm_Chr5g0072301

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003466
Physical Location & Seq
Reverse (-)
78229644 .. 78231127
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34727

Sequence Viewer

Length: 978 bp
ATGGCTGGTCAATCCGTCTCTGTTTGGGTCGTTATTGTTGCTGCAGTAGCTATTGTGATGATCCCTACGTGTACTACAGCACAACTTGATACCGATGTATATATGAAAGCATGTCCTCAGGCATTGCCGATTATCAGATCAGTTGTCAAATTAGCGATTAATCGCGAGGCACGCATTGGAGCATCGCTACTACGACTTCACTTCCATGACTGCTTTGTGAATGGGTGTGATGGATCAGTGTTGCTGGATGACACTGCTAACTTCACTGGGGAGAAGACGGCACTTCCAAATCTGAACTCCATTAGAGGTTTTGGCGTAGTCGATGATATTAAAGCAAACCTCAATAGCGTTTGCCGTGGAAATGTGGTCTCATGTGCAGACATCTTAGCTGTTGCAGCTCGTGACTCCGTTGAGATTTTGGGAGGCCCGTCCTATTCCTATGAAGTATTATTGGGTAGAAGAGATGCAACAACTACAAGCATAAATGATGCCAACAGAAACCTTCCTCCTCCGTTTTTCAACTTCCCTCAACTGCTTTCCAACTTTCAATCCCATGGTTTAGACCTACAAGACCTAGTCCTTCTCTCTGCGGGCCATACCATCGGACTAGCTAAGTGCACCACCTTCCGGGCAAGGATTTACAACGAAACCAACATAGACCCTGACTTTGCAGCCTCCCTAAAACAGGGTTGTCCGGTAAACGATGGGGACAACAACATGGCACCTCTGGACTCAACTACAGCGAAATTCGACACTGTTTACTTCAAGGCTTTGCTAGAGAAAAAGGGTCTACTTCACTCTGACCAGGAGCTCTTTAAAGGCGATGGTAGTGACAGTGATAACCTGGTGCAGCATTACGCTAACAACCCGAACGACTTTGCAGTTGATTTTGGAGCTTCCATGATCAAGATGGGTAACATGAAGCCTCTCACTGGATCTGATGGTGAGATTAGACTCAACTGCAGGAAAATCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

325

Amino Acids

35.09

Weight (kDa)

5.36

Isoelectric Point (pI)

30.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 289 1.3e-78 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 721
AccI GTMKAC 1 cut(s) 790
AccII CGCG 1 cut(s) 165
AciI CCGC 1 cut(s) 590
AclWI GGATC 3 cut(s) 55, 241, 943
AcsI RAATTY 1 cut(s) 746
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 3 cut(s) 627, 685, 932
AflIII ACRYGT 1 cut(s) 68
AgsI TTSAA 3 cut(s) 520, 548, 766
AjnI CCWGG 2 cut(s) 804, 843
AluBI AGCT 6 cut(s) 50, 389, 398, 611, 811, 896
AluI AGCT 6 cut(s) 50, 389, 398, 611, 811, 896
Alw21I GWGCWC 2 cut(s) 620, 813
Alw26I GTCTC 2 cut(s) 22, 373
Alw44I GTGCAC 1 cut(s) 616
AlwI GGATC 3 cut(s) 55, 241, 943
AoxI GGCC 2 cut(s) 424, 592
ApaLI GTGCAC 1 cut(s) 616
ApeKI GCWGC 4 cut(s) 41, 395, 671, 850
ApoI RAATTY 1 cut(s) 746
ArsI GACNNNNNNTTYG 2 cut(s) 650, 682
AseI ATTAAT 1 cut(s) 159
AspS9I GGNCC 2 cut(s) 425, 592
AsuC2I CCSGG 1 cut(s) 629
AsuHPI GGTGA 1 cut(s) 956
AxyI CCTNAGG 1 cut(s) 117
BaeGI GKGCMC 1 cut(s) 620
BaeI ACNNNNGTAYC 2 cut(s) 81, 114
BanI GGYRCC 1 cut(s) 721
BanII GRGCYC 1 cut(s) 813
BauI CACGAG 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 281
Bbv12I GWGCWC 2 cut(s) 620, 813
BbvI GCAGC 4 cut(s) 28, 407, 683, 862
BccI CCATC 6 cut(s) 224, 608, 698, 818, 904, 935
BceAI ACGGC 2 cut(s) 294, 339
BciT130I CCWGG 2 cut(s) 806, 845
BclI TGATCA 1 cut(s) 903
BcnI CCSGG 1 cut(s) 629
BcoDI GTCTC 2 cut(s) 22, 373
BfaI CTAG 4 cut(s) 575, 608, 776, 976
BfmI CTRYAG 4 cut(s) 42, 75, 738, 961
BisI GCNGC 4 cut(s) 42, 396, 672, 851
BlsI GCNGC 4 cut(s) 43, 397, 673, 852
Bme1390I CCNGG 3 cut(s) 629, 806, 845
BmgT120I GGNCC 2 cut(s) 425, 592
BmiI GGNNCC 1 cut(s) 723
BmrFI CCNGG 3 cut(s) 629, 806, 845
BmrI ACTGGG 1 cut(s) 276
BmsI GCATC 3 cut(s) 191, 454, 478
BmuI ACTGGG 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 629
BsaAI YACGTR 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 373
BsaJI CCNNGG 2 cut(s) 355, 553
BsaWI WCCGGW 1 cut(s) 694
Bsc4I CCNNNNNNNGG 3 cut(s) 627, 685, 932
Bse1I ACTGG 2 cut(s) 271, 937
Bse21I CCTNAGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 122
BseBI CCWGG 2 cut(s) 806, 845
BseDI CCNNGG 2 cut(s) 355, 553
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 3 cut(s) 627, 685, 932
BseMI GCAATG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 2 cut(s) 271, 937
BseRI GAGGAG 1 cut(s) 498
BseSI GKGCMC 1 cut(s) 620
BseXI GCAGC 4 cut(s) 28, 407, 683, 862
BsgI GTGCAG 2 cut(s) 396, 869
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 2 cut(s) 426, 594
BshNI GGYRCC 1 cut(s) 721
BsiHKAI GWGCWC 2 cut(s) 620, 813
BsiSI CCGG 2 cut(s) 628, 695
BslFI GGGAC 1 cut(s) 722
BslI CCNNNNNNNGG 3 cut(s) 627, 685, 932
BsmAI GTCTC 2 cut(s) 22, 373
BsmBI CGTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 722
BsnI GGCC 2 cut(s) 426, 594
Bso31I GGTCTC 1 cut(s) 373
Bsp1286I GDGCHC 2 cut(s) 620, 813
Bsp143I GATC 5 cut(s) 60, 137, 233, 903, 935
Bsp19I CCATGG 1 cut(s) 553
Bsp68I TCGCGA 1 cut(s) 165
BspACI CCGC 1 cut(s) 590
BspANI GGCC 2 cut(s) 426, 594
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 723
BspMAI CTGCAG 2 cut(s) 46, 965
BspPI GGATC 3 cut(s) 55, 241, 943
BspT107I GGYRCC 1 cut(s) 721
BspTNI GGTCTC 1 cut(s) 373
BsrDI GCAATG 1 cut(s) 122
BsrI ACTGG 2 cut(s) 271, 937
BssECI CCNNGG 2 cut(s) 355, 553
BssMI GATC 5 cut(s) 60, 137, 233, 903, 935
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 553
Bst2BI CACGAG 1 cut(s) 399
Bst2UI CCWGG 2 cut(s) 806, 845
Bst4CI ACNGT 2 cut(s) 757, 836
Bst6I CTCTTC 1 cut(s) 454
BstBAI YACGTR 1 cut(s) 69
BstC8I GCNNGC 2 cut(s) 172, 592
BstDEI CTNAG 3 cut(s) 117, 385, 612
BstDSI CCRYGG 2 cut(s) 355, 553
BstENI CCTNNNNNAGG 1 cut(s) 683
BstF5I GGATG 1 cut(s) 253
BstFNI CGCG 1 cut(s) 165
BstKTI GATC 5 cut(s) 63, 140, 236, 906, 938
BstMAI GTCTC 2 cut(s) 22, 373
BstMBI GATC 5 cut(s) 60, 137, 233, 903, 935
BstMWI GCNNNNNNNGC 3 cut(s) 47, 171, 395
BstNI CCWGG 2 cut(s) 806, 845
BstNSI RCATGY 1 cut(s) 114
BstSCI CCNGG 3 cut(s) 627, 804, 843
BstSFI CTRYAG 4 cut(s) 42, 75, 738, 961
BstSLI GKGCMC 1 cut(s) 620
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 4 cut(s) 28, 407, 683, 862
BstV2I GAAGAC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 935
BstYI RGATCY 1 cut(s) 935
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 2 cut(s) 426, 594
BtgI CCRYGG 2 cut(s) 355, 553
BtgZI GCGATG 2 cut(s) 168, 837
BtsCI GGATG 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 6 cut(s) 243, 252, 264, 753, 841, 930
BtuMI TCGCGA 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 172, 592
Cfr13I GGNCC 2 cut(s) 425, 592
CsiI ACCWGGT 1 cut(s) 843
Csp6I GTAC 1 cut(s) 72
CviAII CATG 7 cut(s) 111, 206, 372, 554, 718, 901, 919
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 3 cut(s) 117, 385, 612
DpnI GATC 5 cut(s) 62, 139, 235, 905, 937
DpnII GATC 5 cut(s) 60, 137, 233, 903, 935
DraI TTTAAA 1 cut(s) 817
Eam1104I CTCTTC 1 cut(s) 454
EarI CTCTTC 1 cut(s) 454
Ecl136II GAGCTC 1 cut(s) 811
Eco130I CCWWGG 1 cut(s) 553
Eco24I GRGCYC 1 cut(s) 813
Eco31I GGTCTC 1 cut(s) 373
Eco53kI GAGCTC 1 cut(s) 811
Eco81I CCTNAGG 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 811
EcoNI CCTNNNNNAGG 1 cut(s) 683
EcoRII CCWGG 2 cut(s) 804, 843
EcoT14I CCWWGG 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 813
ErhI CCWWGG 1 cut(s) 553
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 7 cut(s) 114, 209, 375, 557, 721, 904, 922
FaqI GGGAC 1 cut(s) 722
FatI CATG 7 cut(s) 110, 205, 371, 553, 717, 900, 918
FauI CCCGC 1 cut(s) 583
FbaI TGATCA 1 cut(s) 903
FblI GTMKAC 1 cut(s) 790
Fnu4HI GCNGC 4 cut(s) 42, 396, 672, 851
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 813
Fsp4HI GCNGC 4 cut(s) 42, 396, 672, 851
FspBI CTAG 4 cut(s) 575, 608, 776, 976
GluI GCNGC 4 cut(s) 42, 396, 672, 851
HaeIII GGCC 2 cut(s) 426, 594
HapII CCGG 2 cut(s) 628, 695
Hin1II CATG 7 cut(s) 114, 209, 375, 557, 721, 904, 922
HinfI GANTC 3 cut(s) 404, 731, 954
HpaII CCGG 2 cut(s) 628, 695
HphI GGTGA 1 cut(s) 956
Hpy166II GTNNAC 5 cut(s) 72, 618, 700, 760, 791
Hpy188I TCNGA 5 cut(s) 137, 294, 605, 802, 940
Hpy188III TCNNGA 4 cut(s) 164, 401, 728, 907
Hpy8I GTNNAC 5 cut(s) 72, 618, 700, 760, 791
HpyAV CCTTC 3 cut(s) 512, 590, 634
HpyCH4III ACNGT 2 cut(s) 757, 836
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 9 cut(s) 44, 377, 395, 467, 618, 671, 850, 881, 963
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 171, 395
HpyF3I CTNAG 3 cut(s) 117, 385, 612
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 7 cut(s) 114, 209, 375, 557, 721, 904, 922
Ksp22I TGATCA 1 cut(s) 903
Kzo9I GATC 5 cut(s) 60, 137, 233, 903, 935
LmnI GCTCC 3 cut(s) 179, 808, 893
Lsp1109I GCAGC 4 cut(s) 28, 407, 683, 862
LweI GCATC 3 cut(s) 191, 454, 478
MabI ACCWGGT 1 cut(s) 843
MaeI CTAG 4 cut(s) 575, 608, 776, 976
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 3 cut(s) 401, 830, 914
MalI GATC 5 cut(s) 62, 139, 235, 905, 937
MboI GATC 5 cut(s) 60, 137, 233, 903, 935
MboII GAAGA 2 cut(s) 286, 471
MflI RGATCY 1 cut(s) 935
MhlI GDGCHC 2 cut(s) 620, 813
MluCI AATT 2 cut(s) 149, 746
MlyI GAGTC 3 cut(s) 398, 725, 948
MmeI TCCRAC 1 cut(s) 564
MseI TTAA 3 cut(s) 159, 330, 816
MslI CAYNNNNRTG 1 cut(s) 204
MspI CCGG 2 cut(s) 628, 695
MspR9I CCNGG 3 cut(s) 629, 806, 845
MvaI CCWGG 2 cut(s) 806, 845
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 47, 171, 395
NciI CCSGG 1 cut(s) 629
NcoI CCATGG 1 cut(s) 553
NdeII GATC 5 cut(s) 60, 137, 233, 903, 935
NlaIII CATG 7 cut(s) 114, 209, 375, 557, 721, 904, 922
NlaIV GGNNCC 1 cut(s) 723
NmuCI GTSAC 2 cut(s) 401, 830
NruI TCGCGA 1 cut(s) 165
NspI RCATGY 1 cut(s) 114
PflFI GACNNNGTC 1 cut(s) 575
PkrI GCNGC 4 cut(s) 43, 397, 673, 852
PleI GAGTC 3 cut(s) 398, 725, 948
PpsI GAGTC 3 cut(s) 398, 725, 948
Ppu21I YACGTR 1 cut(s) 69
PshBI ATTAAT 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 813
Psp6I CCWGG 2 cut(s) 804, 843
PspGI CCWGG 2 cut(s) 804, 843
PspN4I GGNNCC 1 cut(s) 723
PspPI GGNCC 2 cut(s) 425, 592
PstI CTGCAG 2 cut(s) 46, 965
PsuI RGATCY 1 cut(s) 935
PsyI GACNNNGTC 1 cut(s) 575
RruI TCGCGA 1 cut(s) 165
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 813
SaqAI TTAA 3 cut(s) 159, 330, 816
SatI GCNGC 4 cut(s) 42, 396, 672, 851
Sau3AI GATC 5 cut(s) 60, 137, 233, 903, 935
Sau96I GGNCC 2 cut(s) 425, 592
SchI GAGTC 3 cut(s) 398, 725, 948
ScrFI CCNGG 3 cut(s) 629, 806, 845
SduI GDGCHC 2 cut(s) 620, 813
SexAI ACCWGGT 1 cut(s) 843
SfaNI GCATC 3 cut(s) 191, 454, 478
SfcI CTRYAG 4 cut(s) 42, 75, 738, 961
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 2 cut(s) 149, 746
SsiI CCGC 1 cut(s) 590
SspMI CTAG 4 cut(s) 575, 608, 776, 976
SstI GAGCTC 1 cut(s) 813
StyD4I CCNGG 3 cut(s) 627, 804, 843
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 2 cut(s) 757, 836
TaiI ACGT 1 cut(s) 71
TaqI TCGA 2 cut(s) 321, 750
TasI AATT 2 cut(s) 149, 746
TatI WGTACW 1 cut(s) 71
Tru1I TTAA 3 cut(s) 159, 330, 816
Tru9I TTAA 3 cut(s) 159, 330, 816
TscAI CASTG 6 cut(s) 243, 259, 271, 760, 841, 937
TseFI GTSAC 2 cut(s) 401, 830
TseI GCWGC 4 cut(s) 41, 395, 671, 850
Tsp45I GTSAC 2 cut(s) 401, 830
TspDTI ATGAA 3 cut(s) 119, 456, 935
TspGWI ACGGA 3 cut(s) 4, 397, 501
TspRI CASTG 6 cut(s) 243, 259, 271, 760, 841, 937
Tth111I GACNNNGTC 1 cut(s) 575
VneI GTGCAC 1 cut(s) 616
VspI ATTAAT 1 cut(s) 159
XagI CCTNNNNNAGG 1 cut(s) 683
XapI RAATTY 1 cut(s) 746
XceI RCATGY 1 cut(s) 114
XcmI CCANNNNNNNNNTGG 1 cut(s) 907
XmiI GTMKAC 1 cut(s) 790
XspI CTAG 4 cut(s) 575, 608, 776, 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.