Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003466

Physical Location & Seq

Genomic Coordinates Forward (+)

3237625 .. 3240266

Gene Structure 2642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G044600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCAGCAGCTAATTCTCATCAACCTGTCTGGGTTTTGTTCACTACTTTTGTTGTTGCAGCTGCTATTGTGCTGGCCCCAGCTACATGCACTGCTCAACTCACTCGTGATTTCTATCAGCAGTCCTGCCCTCAGGCATTGCAAATCATCAGATCAGTTGTCAACGGAGCTATTAATCGGGAGACGCGCATGGGAGCGTCGCTCCTACGCTTGCACTTCCATGACTGCTTTGTCAATGGGTGTGATGGATCGATTTTGCTGGACGACACAGATAACTTCACTGGTGAGAAGACGGCCAGCGCGAATCTGAACTCCGTTAGAGGTTTTGATGTGATTGATGAAATTAAAGCAACCCTCAATACATATTGCAATGGCAATGTGGTCTCATGTGCTGATATCTTAGCAGTTGCAGCTCGTGACTCGGTTGAGATTCTGGGAGGCCCTTCCTATTCCTATGAAGTACAATTGGGTAGAAGAGATGCAACAACTGCAGTCTTGAATGATGCAAACAGAAATATTCCTCCTCCAACTTTCGACTTCTCTCAGCTTCTCTCCATCTTTCAATCTCATGGTCTAGGCCTGCAAGATCTGATCCTCCTCTCAGGGGGCCACACCATTGGACTAGCTAGGTGCACGACCTTCAGAGACAGGATTTACAATGACACCAATATAGACCCTGAGTTTGCAGCTTCCTTGCGAGAGGGTTGTCCTGCAAATGGTGGAGACGACAACACGACGCCAATAGACTCAACCACAACGCAGTTTGATACCGTGTACTTCAAGTCTTTGCTGCAGAAAAAAGGTCTCTTCCATTCTGATCAGGAGCTCTTTAAAAGTGATGGCAGTGATAGCGATAATCTGGTGCAGCATTACGCTAACAGCCCCGAGGATTTCAAAGTAGATTTTGGGGCTTCCATGATCAAGATGGGTAACATAAACCCCCTCACTGGATATGCTGGTGAGATAAGGCTCAATTGCAGGAAAATCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

331

Amino Acids

35.91

Weight (kDa)

4.94

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40120 FvH4_3g40140 FvH4_3g40150 FvH4_3g40160
malus_domestica	MD03G1059000.v1.1 MD11G1061000.v1.1 MD11G1061100.v1.1 MD11G1061200.v1.1
prunus_persica	Prupe.6G044200_v2.0.a1 Prupe.6G044500_v2.0.a1 Prupe.6G044600_v2.0.a1 Prupe.6G044700_v2.0.a1 Prupe.6G044800_v2.0.a1
pyrus_communis	pycom11g05080
rosa_chinensis	RchiOBHm_Chr5g0072301 RchiOBHm_Chr5g0072331 RchiOBHm_Chr5g0072351
rosa_laevigata	RLG00000036292 RLG00000036293
rosa_multiflora	Rmu_co8350947.1_g000001 Rmu_sc0000737.1_g000016 Rmu_sc0008937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008870 Rroxscaffold_1G00008880 Rroxscaffold_1G00008900 Rroxscaffold_1G00008940 Rroxscaffold_1G00008950 Rroxscaffold_1G00008960
rosa_samantha	Rh5AG473600 Rh5BG494100 Rh5CG517800 Rh5CG518100 Rh5DG506000 Rh5DG506200
rosa_wichuraiana	Rw5G043990 Rw5G044010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AccII	CGCG	2 cut(s)	187, 302
AclWI	GGATC	2 cut(s)	256, 586
AcoI	YGGCCR	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	625
AcyI	GRCGYC	1 cut(s)	737
AfaI	GTAC	2 cut(s)	462, 776
AfiI	CCNNNNNNNGG	3 cut(s)	604, 716, 947
AgsI	TTSAA	4 cut(s)	499, 563, 781, 895
AluBI	AGCT	9 cut(s)	11, 62, 83, 170, 413, 547, 626, 689, 826
AluI	AGCT	9 cut(s)	11, 62, 83, 170, 413, 547, 626, 689, 826
Alw21I	GWGCWC	2 cut(s)	635, 828
Alw26I	GTCTC	5 cut(s)	176, 388, 639, 717, 809
Alw44I	GTGCAC	1 cut(s)	631
AlwI	GGATC	2 cut(s)	256, 586
Ama87I	CYCGRG	1 cut(s)	884
AoxI	GGCC	5 cut(s)	75, 294, 439, 577, 607
ApaLI	GTGCAC	1 cut(s)	631
ApeKI	GCWGC	8 cut(s)	5, 8, 59, 62, 410, 686, 790, 865
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
AseI	ATTAAT	1 cut(s)	174
AspLEI	GCGC	2 cut(s)	189, 302
AspS9I	GGNCC	3 cut(s)	76, 440, 607
AsuHPI	GGTGA	2 cut(s)	296, 971
AvaI	CYCGRG	1 cut(s)	884
AxyI	CCTNAGG	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	635
BanII	GRGCYC	1 cut(s)	828
BauI	CACGAG	2 cut(s)	105, 414
BbsI	GAAGAC	1 cut(s)	296
Bbv12I	GWGCWC	2 cut(s)	635, 828
BbvI	GCAGC	8 cut(s)	17, 20, 49, 71, 422, 698, 777, 877
BccI	CCATC	4 cut(s)	239, 563, 833, 919
BceAI	ACGGC	1 cut(s)	309
BclI	TGATCA	2 cut(s)	817, 918
BcoDI	GTCTC	5 cut(s)	176, 388, 639, 717, 809
BfaI	CTAG	4 cut(s)	575, 623, 627, 991
BfmI	CTRYAG	2 cut(s)	489, 791
BglII	AGATCT	1 cut(s)	586
BisI	GCNGC	8 cut(s)	6, 9, 60, 63, 411, 687, 791, 866
BlsI	GCNGC	8 cut(s)	7, 10, 61, 64, 412, 688, 792, 867
BmeT110I	CYCGRG	1 cut(s)	884
BmgT120I	GGNCC	3 cut(s)	76, 440, 607
BmiI	GGNNCC	2 cut(s)	78, 608
BmsI	GCATC	2 cut(s)	469, 493
BpiI	GAAGAC	1 cut(s)	296
BplI	GAGNNNNNCTC	2 cut(s)	186, 218
Bsa29I	ATCGAT	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	737
BsaI	GGTCTC	2 cut(s)	388, 809
BsaJI	CCNNGG	1 cut(s)	885
Bsc4I	CCNNNNNNNGG	3 cut(s)	604, 716, 947
Bse1I	ACTGG	2 cut(s)	286, 952
Bse21I	CCTNAGG	1 cut(s)	132
Bse3DI	GCAATG	3 cut(s)	137, 376, 382
Bse8I	GATNNNNATC	1 cut(s)	114
BseCI	ATCGAT	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	885
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	604, 716, 947
BseMI	GCAATG	3 cut(s)	137, 376, 382
BseMII	CTCAG	4 cut(s)	146, 557, 615, 669
BseNI	ACTGG	2 cut(s)	286, 952
BseRI	GAGGAG	2 cut(s)	513, 587
BseSI	GKGCMC	1 cut(s)	635
BseXI	GCAGC	8 cut(s)	17, 20, 49, 71, 422, 698, 777, 877
BseYI	CCCAGC	1 cut(s)	79
BsgI	GTGCAG	1 cut(s)	884
Bsh1236I	CGCG	2 cut(s)	187, 302
BshFI	GGCC	5 cut(s)	77, 296, 441, 579, 609
BshVI	ATCGAT	1 cut(s)	251
BsiHKAI	GWGCWC	2 cut(s)	635, 828
BsiHKCI	CYCGRG	1 cut(s)	884
BslI	CCNNNNNNNGG	3 cut(s)	604, 716, 947
BsmAI	GTCTC	5 cut(s)	176, 388, 639, 717, 809
BsmBI	CGTCTC	2 cut(s)	176, 717
BsnI	GGCC	5 cut(s)	77, 296, 441, 579, 609
Bso31I	GGTCTC	2 cut(s)	388, 809
BsoBI	CYCGRG	1 cut(s)	884
Bsp1286I	GDGCHC	2 cut(s)	635, 828
Bsp143I	GATC	6 cut(s)	152, 248, 586, 591, 817, 918
BspANI	GGCC	5 cut(s)	77, 296, 441, 579, 609
BspCNI	CTCAG	4 cut(s)	145, 556, 614, 670
BspDI	ATCGAT	1 cut(s)	251
BspFNI	CGCG	2 cut(s)	187, 302
BspLI	GGNNCC	2 cut(s)	78, 608
BspMAI	CTGCAG	2 cut(s)	493, 795
BspPI	GGATC	2 cut(s)	256, 586
BspTNI	GGTCTC	2 cut(s)	388, 809
BsrDI	GCAATG	3 cut(s)	137, 376, 382
BsrI	ACTGG	2 cut(s)	286, 952
BssECI	CCNNGG	1 cut(s)	885
BssMI	GATC	6 cut(s)	152, 248, 586, 591, 817, 918
BssNI	GRCGYC	1 cut(s)	737
BssSI	CACGAG	2 cut(s)	105, 414
Bst2BI	CACGAG	2 cut(s)	105, 414
Bst4CI	ACNGT	1 cut(s)	772
Bst6I	CTCTTC	2 cut(s)	469, 812
BstACI	GRCGYC	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	4 cut(s)	75, 212, 298, 581
BstDEI	CTNAG	5 cut(s)	132, 400, 543, 601, 678
BstFNI	CGCG	2 cut(s)	187, 302
BstHHI	GCGC	2 cut(s)	189, 302
BstKTI	GATC	6 cut(s)	155, 251, 589, 594, 820, 921
BstMAI	GTCTC	5 cut(s)	176, 388, 639, 717, 809
BstMBI	GATC	6 cut(s)	152, 248, 586, 591, 817, 918
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 488, 849
BstNSI	RCATGY	1 cut(s)	90
BstSFI	CTRYAG	2 cut(s)	489, 791
BstSLI	GKGCMC	1 cut(s)	635
BstUI	CGCG	2 cut(s)	187, 302
BstV1I	GCAGC	8 cut(s)	17, 20, 49, 71, 422, 698, 777, 877
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	586
BstXI	CCANNNNNNTGG	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	586
Bsu15I	ATCGAT	1 cut(s)	251
Bsu36I	CCTNAGG	1 cut(s)	132
BsuRI	GGCC	5 cut(s)	77, 296, 441, 579, 609
BsuTUI	ATCGAT	1 cut(s)	251
BtsI	GCAGTG	2 cut(s)	90, 850
BtsIMutI	CAGTG	4 cut(s)	90, 279, 850, 945
Cac8I	GCNNGC	4 cut(s)	75, 212, 298, 581
CfoI	GCGC	2 cut(s)	189, 302
Cfr13I	GGNCC	3 cut(s)	76, 440, 607
ClaI	ATCGAT	1 cut(s)	251
CseI	GACGC	3 cut(s)	186, 193, 745
Csp6I	GTAC	2 cut(s)	461, 775
CviAII	CATG	6 cut(s)	87, 190, 221, 387, 569, 916
CviQI	GTAC	2 cut(s)	461, 775
DdeI	CTNAG	5 cut(s)	132, 400, 543, 601, 678
DpnI	GATC	6 cut(s)	154, 250, 588, 593, 819, 920
DpnII	GATC	6 cut(s)	152, 248, 586, 591, 817, 918
DraI	TTTAAA	1 cut(s)	832
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	2 cut(s)	469, 812
EarI	CTCTTC	2 cut(s)	469, 812
Ecl136II	GAGCTC	1 cut(s)	826
Eco147I	AGGCCT	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	828
Eco31I	GGTCTC	2 cut(s)	388, 809
Eco32I	GATATC	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	826
Eco57I	CTGAAG	1 cut(s)	625
Eco81I	CCTNAGG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	884
EcoICRI	GAGCTC	1 cut(s)	826
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRV	GATATC	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	828
Esp3I	CGTCTC	2 cut(s)	176, 717
FaeI	CATG	6 cut(s)	90, 193, 224, 390, 572, 919
FatI	CATG	6 cut(s)	86, 189, 220, 386, 568, 915
FbaI	TGATCA	2 cut(s)	817, 918
Fnu4HI	GCNGC	8 cut(s)	6, 9, 60, 63, 411, 687, 791, 866
FriOI	GRGCYC	1 cut(s)	828
Fsp4HI	GCNGC	8 cut(s)	6, 9, 60, 63, 411, 687, 791, 866
FspBI	CTAG	4 cut(s)	575, 623, 627, 991
GlaI	GCGC	2 cut(s)	188, 301
GluI	GCNGC	8 cut(s)	6, 9, 60, 63, 411, 687, 791, 866
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	5 cut(s)	77, 296, 441, 579, 609
HgaI	GACGC	3 cut(s)	186, 193, 745
HhaI	GCGC	2 cut(s)	189, 302
Hin1I	GRCGYC	1 cut(s)	737
Hin1II	CATG	6 cut(s)	90, 193, 224, 390, 572, 919
Hin6I	GCGC	2 cut(s)	187, 300
HinP1I	GCGC	2 cut(s)	187, 300
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	4 cut(s)	304, 419, 430, 746
HphI	GGTGA	2 cut(s)	296, 971
Hpy166II	GTNNAC	4 cut(s)	42, 163, 633, 775
Hpy188I	TCNGA	5 cut(s)	152, 309, 591, 644, 817
Hpy188III	TCNNGA	6 cut(s)	107, 179, 416, 496, 821, 922
Hpy8I	GTNNAC	4 cut(s)	42, 163, 633, 775
Hpy99I	CGWCG	2 cut(s)	202, 739
HpyAV	CCTTC	2 cut(s)	453, 649
HpyCH4III	ACNGT	1 cut(s)	772
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 488, 849
HpyF3I	CTNAG	5 cut(s)	132, 400, 543, 601, 678
Hsp92I	GRCGYC	1 cut(s)	737
Hsp92II	CATG	6 cut(s)	90, 193, 224, 390, 572, 919
HspAI	GCGC	2 cut(s)	187, 300
Ksp22I	TGATCA	2 cut(s)	817, 918
Kzo9I	GATC	6 cut(s)	152, 248, 586, 591, 817, 918
LmnI	GCTCC	4 cut(s)	167, 194, 207, 823
Lsp1109I	GCAGC	8 cut(s)	17, 20, 49, 71, 422, 698, 777, 877
LweI	GCATC	2 cut(s)	469, 493
MaeI	CTAG	4 cut(s)	575, 623, 627, 991
MaeIII	GTNAC	2 cut(s)	416, 929
MalI	GATC	6 cut(s)	154, 250, 588, 593, 819, 920
MboI	GATC	6 cut(s)	152, 248, 586, 591, 817, 918
MboII	GAAGA	3 cut(s)	301, 486, 799
MfeI	CAATTG	2 cut(s)	464, 973
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	2 cut(s)	635, 828
MluCI	AATT	4 cut(s)	13, 342, 464, 973
MlyI	GAGTC	2 cut(s)	413, 740
MmeI	TCCRAC	1 cut(s)	551
MseI	TTAA	3 cut(s)	174, 345, 831
MslI	CAYNNNNRTG	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	62
MunI	CAATTG	2 cut(s)	464, 973
MvnI	CGCG	2 cut(s)	187, 302
MwoI	GCNNNNNNNGC	3 cut(s)	410, 488, 849
NdeII	GATC	6 cut(s)	152, 248, 586, 591, 817, 918
NlaIII	CATG	6 cut(s)	90, 193, 224, 390, 572, 919
NlaIV	GGNNCC	2 cut(s)	78, 608
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	90
PceI	AGGCCT	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	304, 430
PkrI	GCNGC	8 cut(s)	7, 10, 61, 64, 412, 688, 792, 867
PleI	GAGTC	2 cut(s)	413, 740
PpsI	GAGTC	2 cut(s)	413, 740
PshBI	ATTAAT	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	828
PspFI	CCCAGC	1 cut(s)	79
PspN4I	GGNNCC	2 cut(s)	78, 608
PspPI	GGNCC	3 cut(s)	76, 440, 607
PstI	CTGCAG	2 cut(s)	493, 795
PsuI	RGATCY	1 cut(s)	586
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	462, 776
RsaNI	GTAC	2 cut(s)	461, 775
RseI	CAYNNNNRTG	1 cut(s)	219
SacI	GAGCTC	1 cut(s)	828
SaqAI	TTAA	3 cut(s)	174, 345, 831
SatI	GCNGC	8 cut(s)	6, 9, 60, 63, 411, 687, 791, 866
Sau3AI	GATC	6 cut(s)	152, 248, 586, 591, 817, 918
Sau96I	GGNCC	3 cut(s)	76, 440, 607
SchI	GAGTC	2 cut(s)	413, 740
SduI	GDGCHC	2 cut(s)	635, 828
SfaNI	GCATC	2 cut(s)	469, 493
SfcI	CTRYAG	2 cut(s)	489, 791
SmiMI	CAYNNNNRTG	1 cut(s)	219
Sse9I	AATT	4 cut(s)	13, 342, 464, 973
SseBI	AGGCCT	1 cut(s)	579
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	4 cut(s)	575, 623, 627, 991
SstI	GAGCTC	1 cut(s)	828
StuI	AGGCCT	1 cut(s)	579
TaaI	ACNGT	1 cut(s)	772
TaqI	TCGA	2 cut(s)	251, 534
TasI	AATT	4 cut(s)	13, 342, 464, 973
TatI	WGTACW	2 cut(s)	460, 774
TfiI	GAWTC	2 cut(s)	304, 430
Tru1I	TTAA	3 cut(s)	174, 345, 831
Tru9I	TTAA	3 cut(s)	174, 345, 831
TscAI	CASTG	4 cut(s)	97, 286, 850, 952
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	8 cut(s)	5, 8, 59, 62, 410, 686, 790, 865
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	354, 471
TspGWI	ACGGA	2 cut(s)	180, 304
TspRI	CASTG	4 cut(s)	97, 286, 850, 952
VneI	GTGCAC	1 cut(s)	631
VspI	ATTAAT	1 cut(s)	174
XceI	RCATGY	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	1 cut(s)	922
XspI	CTAG	4 cut(s)	575, 623, 627, 991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.