FvH4_3g40140

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003466
Physical Location & Seq
Reverse (-)
33930892 .. 33932749
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40140.t1

Sequence Viewer

Length: 981 bp
ATGGCCGGACGTCAATCTGTCTTAGTTTGGGTTGGTATTGTTGCTGCAGTAGCAATTGCGTTGATCCCTACGTGCACTACAGCACAACTTGATCCTGATGTGTATAAGAAATCGTGTCCTCAGGCATTGCCGATCATCAGATCAGTTGTCAAGAAAGCGATTAATCGCGAGGCACGCATCGGAGCATCGCTACTACGACTTCACTTCCATGACTGCTTTGTTAACGGGTGTGATGGATCAGTTTTGCTGGATGACTCTGCTAACTTCACTGGTGAGAAGACGGCATTTCCAAATCTGAACTCCATTAGAGGTTTTGACGTCGTCGATGATATCAAGGCAACTCTCAATAGCGTTTGCCATGGAAATGTGGTCTCATGCGCAGACATCTTAGCTGTGGCAGCTCGTGACTCCGTTGAGATTTTGGGAGGTCCGTCCTATTCCTATGAAGTGTTGTTGGGCAGAAGAGATGCAACAACTACAAGCATAAACGATGCCAACAGAAACCTTCCACCTCCGTTTTTCAACTTCCCTCAACTTCTTTCCAATTTTCAATCCCATGGTTTAGACCTACAAGACCTAGTCCTTCTCTCGGCTGGCCACACCATCGGACTGGCTAGGTGCACCACCTTCCGGACCAGGATTTACAACGAAACCAACATAGACCCTGAATTTGCAGCCTCCCTAAAACAAGGTTGTCCTTCAAATGGTGGAGATGACAACACGGCGCCGCTAGACTCAACGACAGCAAGATTCGATACTGATTACTTCAAGGCTTTGCTGGAGAAGAAGGGTCTGCTCCACTCTGACCAGGAGCTCTTTAAAGGCGATGGTAGTGACAGTGACAACCTGGTGCAGCATTACGCTAACAATCCGAAAGACTTTGCAGTTGATTTTGGAGCTTCCATGATCAAGATGGGTAACATGAAGCCTCTCACTGGATCTGATGGTGAGATTAGGCTCAACTGCAGGAAAATCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

327

Amino Acids

35.28

Weight (kDa)

5.64

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 290 1e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 13, 321
Acc16I TGCGCA 1 cut(s) 379
AccB1I GGYRCC 1 cut(s) 724
AccII CGCG 1 cut(s) 168
AccIII TCCGGA 1 cut(s) 630
AciI CCGC 1 cut(s) 728
AclWI GGATC 4 cut(s) 58, 86, 244, 946
AcoI YGGCCR 2 cut(s) 3, 595
AcsI RAATTY 1 cut(s) 668
AcyI GRCGYC 3 cut(s) 10, 318, 725
AfiI CCNNNNNNNGG 4 cut(s) 589, 630, 704, 935
AgsI TTSAA 4 cut(s) 523, 551, 702, 769
AjnI CCWGG 3 cut(s) 635, 807, 846
AluBI AGCT 4 cut(s) 392, 401, 814, 899
AluI AGCT 4 cut(s) 392, 401, 814, 899
Alw21I GWGCWC 3 cut(s) 77, 623, 816
Alw26I GTCTC 1 cut(s) 376
Alw44I GTGCAC 2 cut(s) 73, 619
AlwI GGATC 4 cut(s) 58, 86, 244, 946
Aor13HI TCCGGA 1 cut(s) 630
AoxI GGCC 2 cut(s) 3, 595
ApaLI GTGCAC 2 cut(s) 73, 619
ApeKI GCWGC 4 cut(s) 44, 398, 674, 853
ApoI RAATTY 1 cut(s) 668
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
AseI ATTAAT 1 cut(s) 162
AspLEI GCGC 2 cut(s) 380, 727
AspS9I GGNCC 2 cut(s) 428, 633
AsuHPI GGTGA 2 cut(s) 284, 959
AvaII GGWCC 2 cut(s) 428, 633
AxyI CCTNAGG 1 cut(s) 120
BaeGI GKGCMC 2 cut(s) 77, 623
BalI TGGCCA 1 cut(s) 597
BanI GGYRCC 1 cut(s) 724
BanII GRGCYC 1 cut(s) 816
BauI CACGAG 1 cut(s) 402
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 3 cut(s) 77, 623, 816
BbvI GCAGC 4 cut(s) 31, 410, 686, 865
BccI CCATC 5 cut(s) 227, 611, 821, 907, 938
BceAI ACGGC 2 cut(s) 297, 738
BciT130I CCWGG 3 cut(s) 637, 809, 848
BclI TGATCA 1 cut(s) 906
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 4 cut(s) 578, 615, 731, 979
BfmI CTRYAG 3 cut(s) 45, 78, 964
BfoI RGCGCY 1 cut(s) 728
BisI GCNGC 5 cut(s) 45, 399, 675, 728, 854
BlsI GCNGC 5 cut(s) 46, 400, 676, 729, 855
Bme1390I CCNGG 3 cut(s) 637, 809, 848
Bme18I GGWCC 2 cut(s) 428, 633
BmgT120I GGNCC 2 cut(s) 428, 633
BmiI GGNNCC 1 cut(s) 726
BmrFI CCNGG 3 cut(s) 637, 809, 848
BmsI GCATC 4 cut(s) 186, 194, 457, 481
BpiI GAAGAC 1 cut(s) 284
BpmI CTGGAG 1 cut(s) 800
BsaAI YACGTR 1 cut(s) 72
BsaHI GRCGYC 3 cut(s) 10, 318, 725
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 358, 556
BsaWI WCCGGW 1 cut(s) 630
Bsc4I CCNNNNNNNGG 4 cut(s) 589, 630, 704, 935
Bse1I ACTGG 3 cut(s) 274, 615, 940
Bse21I CCTNAGG 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 125
BseAI TCCGGA 1 cut(s) 630
BseBI CCWGG 3 cut(s) 637, 809, 848
BseDI CCNNGG 2 cut(s) 358, 556
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 4 cut(s) 589, 630, 704, 935
BseMI GCAATG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 3 cut(s) 274, 615, 940
BseSI GKGCMC 2 cut(s) 77, 623
BseXI GCAGC 4 cut(s) 31, 410, 686, 865
BsgI GTGCAG 1 cut(s) 872
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 2 cut(s) 5, 597
BshNI GGYRCC 1 cut(s) 724
BsiHKAI GWGCWC 3 cut(s) 77, 623, 816
BsiSI CCGG 2 cut(s) 6, 631
BslI CCNNNNNNNGG 4 cut(s) 589, 630, 704, 935
BsmAI GTCTC 1 cut(s) 376
BsnI GGCC 2 cut(s) 5, 597
Bso31I GGTCTC 1 cut(s) 376
Bsp1286I GDGCHC 3 cut(s) 77, 623, 816
Bsp13I TCCGGA 1 cut(s) 630
Bsp143I GATC 7 cut(s) 63, 91, 132, 140, 236, 906, 938
Bsp19I CCATGG 2 cut(s) 358, 556
Bsp68I TCGCGA 1 cut(s) 168
BspACI CCGC 1 cut(s) 728
BspANI GGCC 2 cut(s) 5, 597
BspCNI CTCAG 1 cut(s) 133
BspEI TCCGGA 1 cut(s) 630
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 726
BspMAI CTGCAG 2 cut(s) 49, 968
BspPI GGATC 4 cut(s) 58, 86, 244, 946
BspT107I GGYRCC 1 cut(s) 724
BspTNI GGTCTC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 125
BsrI ACTGG 3 cut(s) 274, 615, 940
BssECI CCNNGG 2 cut(s) 358, 556
BssMI GATC 7 cut(s) 63, 91, 132, 140, 236, 906, 938
BssNI GRCGYC 3 cut(s) 10, 318, 725
BssSI CACGAG 1 cut(s) 402
BssT1I CCWWGG 2 cut(s) 358, 556
Bst2BI CACGAG 1 cut(s) 402
Bst2UI CCWGG 3 cut(s) 637, 809, 848
Bst4CI ACNGT 1 cut(s) 839
Bst6I CTCTTC 1 cut(s) 457
BstACI GRCGYC 3 cut(s) 10, 318, 725
BstBAI YACGTR 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 175, 595
BstDEI CTNAG 3 cut(s) 22, 120, 388
BstDSI CCRYGG 2 cut(s) 358, 556
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 728
BstHHI GCGC 2 cut(s) 380, 727
BstKTI GATC 7 cut(s) 66, 94, 135, 143, 239, 909, 941
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 7 cut(s) 63, 91, 132, 140, 236, 906, 938
BstMWI GCNNNNNNNGC 3 cut(s) 50, 174, 398
BstNI CCWGG 3 cut(s) 637, 809, 848
BstSCI CCNGG 3 cut(s) 635, 807, 846
BstSFI CTRYAG 3 cut(s) 45, 78, 964
BstSLI GKGCMC 2 cut(s) 77, 623
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 4 cut(s) 31, 410, 686, 865
BstV2I GAAGAC 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 938
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 1 cut(s) 938
Bsu36I CCTNAGG 1 cut(s) 120
BsuRI GGCC 2 cut(s) 5, 597
BtgI CCRYGG 2 cut(s) 358, 556
BtgZI GCGATG 2 cut(s) 171, 840
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 3 cut(s) 267, 844, 933
BtuMI TCGCGA 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 175, 595
CfoI GCGC 2 cut(s) 380, 727
Cfr13I GGNCC 2 cut(s) 428, 633
CsiI ACCWGGT 1 cut(s) 846
CviAII CATG 6 cut(s) 209, 359, 375, 557, 904, 922
DdeI CTNAG 3 cut(s) 22, 120, 388
DinI GGCGCC 1 cut(s) 726
DpnI GATC 7 cut(s) 65, 93, 134, 142, 238, 908, 940
DpnII GATC 7 cut(s) 63, 91, 132, 140, 236, 906, 938
DraI TTTAAA 1 cut(s) 820
EaeI YGGCCR 2 cut(s) 3, 595
Eam1104I CTCTTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 457
Ecl136II GAGCTC 1 cut(s) 814
Eco130I CCWWGG 2 cut(s) 358, 556
Eco24I GRGCYC 1 cut(s) 816
Eco31I GGTCTC 1 cut(s) 376
Eco32I GATATC 1 cut(s) 331
Eco47I GGWCC 2 cut(s) 428, 633
Eco53kI GAGCTC 1 cut(s) 814
Eco81I CCTNAGG 1 cut(s) 120
EcoICRI GAGCTC 1 cut(s) 814
EcoRII CCWGG 3 cut(s) 635, 807, 846
EcoRV GATATC 1 cut(s) 331
EcoT14I CCWWGG 2 cut(s) 358, 556
EcoT38I GRGCYC 1 cut(s) 816
EgeI GGCGCC 1 cut(s) 726
EheI GGCGCC 1 cut(s) 726
ErhI CCWWGG 2 cut(s) 358, 556
FaeI CATG 6 cut(s) 212, 362, 378, 560, 907, 925
FatI CATG 6 cut(s) 208, 358, 374, 556, 903, 921
FbaI TGATCA 1 cut(s) 906
Fnu4HI GCNGC 5 cut(s) 45, 399, 675, 728, 854
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 816
Fsp4HI GCNGC 5 cut(s) 45, 399, 675, 728, 854
FspBI CTAG 4 cut(s) 578, 615, 731, 979
FspI TGCGCA 1 cut(s) 379
GlaI GCGC 2 cut(s) 379, 726
GluI GCNGC 5 cut(s) 45, 399, 675, 728, 854
GsuI CTGGAG 1 cut(s) 800
HaeII RGCGCY 1 cut(s) 728
HaeIII GGCC 2 cut(s) 5, 597
HapII CCGG 2 cut(s) 6, 631
HhaI GCGC 2 cut(s) 380, 727
Hin1I GRCGYC 3 cut(s) 10, 318, 725
Hin1II CATG 6 cut(s) 212, 362, 378, 560, 907, 925
Hin6I GCGC 2 cut(s) 378, 725
HinP1I GCGC 2 cut(s) 378, 725
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 4 cut(s) 254, 407, 734, 750
HpaI GTTAAC 1 cut(s) 223
HpaII CCGG 2 cut(s) 6, 631
HphI GGTGA 2 cut(s) 284, 959
Hpy166II GTNNAC 3 cut(s) 75, 223, 621
Hpy188I TCNGA 7 cut(s) 140, 182, 297, 608, 805, 873, 943
Hpy188III TCNNGA 6 cut(s) 95, 151, 167, 404, 631, 910
Hpy8I GTNNAC 3 cut(s) 75, 223, 621
Hpy99I CGWCG 2 cut(s) 323, 326
HpyAV CCTTC 5 cut(s) 515, 593, 637, 708, 781
HpyCH4III ACNGT 1 cut(s) 839
HpyCH4IV ACGT 3 cut(s) 10, 71, 318
HpyCH4V TGCA 8 cut(s) 47, 75, 470, 621, 674, 853, 884, 966
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 174, 398
HpyF3I CTNAG 3 cut(s) 22, 120, 388
HpySE526I ACGT 3 cut(s) 10, 71, 318
Hsp92I GRCGYC 3 cut(s) 10, 318, 725
Hsp92II CATG 6 cut(s) 212, 362, 378, 560, 907, 925
HspAI GCGC 2 cut(s) 378, 725
KasI GGCGCC 1 cut(s) 724
Kpn2I TCCGGA 1 cut(s) 630
Ksp22I TGATCA 1 cut(s) 906
KspAI GTTAAC 1 cut(s) 223
Kzo9I GATC 7 cut(s) 63, 91, 132, 140, 236, 906, 938
LmnI GCTCC 4 cut(s) 182, 801, 811, 896
Lsp1109I GCAGC 4 cut(s) 31, 410, 686, 865
LweI GCATC 4 cut(s) 186, 194, 457, 481
MabI ACCWGGT 1 cut(s) 846
MaeI CTAG 4 cut(s) 578, 615, 731, 979
MaeII ACGT 3 cut(s) 10, 71, 318
MaeIII GTNAC 4 cut(s) 404, 833, 839, 917
MalI GATC 7 cut(s) 65, 93, 134, 142, 238, 908, 940
MboI GATC 7 cut(s) 63, 91, 132, 140, 236, 906, 938
MboII GAAGA 3 cut(s) 289, 474, 796
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 1 cut(s) 938
MhlI GDGCHC 3 cut(s) 77, 623, 816
MlsI TGGCCA 1 cut(s) 597
MluCI AATT 3 cut(s) 54, 544, 668
MluNI TGGCCA 1 cut(s) 597
Mly113I GGCGCC 1 cut(s) 725
MlyI GAGTC 3 cut(s) 248, 401, 728
MnlI CCTC 8 cut(s) 129, 163, 302, 419, 522, 540, 688, 939
Mox20I TGGCCA 1 cut(s) 597
MroI TCCGGA 1 cut(s) 630
MscI TGGCCA 1 cut(s) 597
MseI TTAA 3 cut(s) 162, 222, 819
MslI CAYNNNNRTG 2 cut(s) 207, 363
Msp20I TGGCCA 1 cut(s) 597
MspI CCGG 2 cut(s) 6, 631
MspR9I CCNGG 3 cut(s) 637, 809, 848
MunI CAATTG 1 cut(s) 54
MvaI CCWGG 3 cut(s) 637, 809, 848
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 50, 174, 398
NarI GGCGCC 1 cut(s) 725
NcoI CCATGG 2 cut(s) 358, 556
NdeII GATC 7 cut(s) 63, 91, 132, 140, 236, 906, 938
NlaIII CATG 6 cut(s) 212, 362, 378, 560, 907, 925
NlaIV GGNNCC 1 cut(s) 726
NmeAIII GCCGAG 1 cut(s) 569
NmuCI GTSAC 3 cut(s) 404, 833, 839
NruI TCGCGA 1 cut(s) 168
NsbI TGCGCA 1 cut(s) 379
PfeI GAWTC 1 cut(s) 750
PflFI GACNNNGTC 2 cut(s) 320, 578
PkrI GCNGC 5 cut(s) 46, 400, 676, 729, 855
PleI GAGTC 3 cut(s) 248, 401, 728
PluTI GGCGCC 1 cut(s) 728
PpsI GAGTC 3 cut(s) 248, 401, 728
Ppu21I YACGTR 1 cut(s) 72
PshBI ATTAAT 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 816
Psp6I CCWGG 3 cut(s) 635, 807, 846
PspGI CCWGG 3 cut(s) 635, 807, 846
PspN4I GGNNCC 1 cut(s) 726
PspPI GGNCC 2 cut(s) 428, 633
PstI CTGCAG 2 cut(s) 49, 968
PsuI RGATCY 1 cut(s) 938
PsyI GACNNNGTC 2 cut(s) 320, 578
RruI TCGCGA 1 cut(s) 168
RseI CAYNNNNRTG 2 cut(s) 207, 363
SacI GAGCTC 1 cut(s) 816
SaqAI TTAA 3 cut(s) 162, 222, 819
SatI GCNGC 5 cut(s) 45, 399, 675, 728, 854
Sau3AI GATC 7 cut(s) 63, 91, 132, 140, 236, 906, 938
Sau96I GGNCC 2 cut(s) 428, 633
SchI GAGTC 3 cut(s) 248, 401, 728
ScrFI CCNGG 3 cut(s) 637, 809, 848
SduI GDGCHC 3 cut(s) 77, 623, 816
SexAI ACCWGGT 1 cut(s) 846
SfaNI GCATC 4 cut(s) 186, 194, 457, 481
SfcI CTRYAG 3 cut(s) 45, 78, 964
SfoI GGCGCC 1 cut(s) 726
SinI GGWCC 2 cut(s) 428, 633
SmiMI CAYNNNNRTG 2 cut(s) 207, 363
Sse9I AATT 3 cut(s) 54, 544, 668
SsiI CCGC 1 cut(s) 728
SspDI GGCGCC 1 cut(s) 724
SspMI CTAG 4 cut(s) 578, 615, 731, 979
SstI GAGCTC 1 cut(s) 816
StyD4I CCNGG 3 cut(s) 635, 807, 846
StyI CCWWGG 2 cut(s) 358, 556
TaaI ACNGT 1 cut(s) 839
TaiI ACGT 3 cut(s) 13, 74, 321
TaqI TCGA 2 cut(s) 324, 753
TasI AATT 3 cut(s) 54, 544, 668
TauI GCSGC 1 cut(s) 730
TfiI GAWTC 1 cut(s) 750
Tru1I TTAA 3 cut(s) 162, 222, 819
Tru9I TTAA 3 cut(s) 162, 222, 819
TscAI CASTG 3 cut(s) 274, 844, 940
TseFI GTSAC 3 cut(s) 404, 833, 839
TseI GCWGC 4 cut(s) 44, 398, 674, 853
Tsp45I GTSAC 3 cut(s) 404, 833, 839
TspDTI ATGAA 2 cut(s) 459, 938
TspGWI ACGGA 3 cut(s) 400, 420, 504
TspRI CASTG 3 cut(s) 274, 844, 940
Tth111I GACNNNGTC 2 cut(s) 320, 578
VneI GTGCAC 2 cut(s) 73, 619
VpaK11BI GGWCC 2 cut(s) 428, 633
VspI ATTAAT 1 cut(s) 162
XapI RAATTY 1 cut(s) 668
XcmI CCANNNNNNNNNTGG 1 cut(s) 910
XspI CTAG 4 cut(s) 578, 615, 731, 979
ZraI GACGTC 2 cut(s) 11, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.