MD11G1061100.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0003466
Physical Location & Seq
Forward (+)
5318298 .. 5319844
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1061100.v1.1.491

Sequence Viewer

Length: 1086 bp
ATGCAAACTAGCCTTATCCGCCCCCCAAAACCCAAAAATTCCTCTATAAAAGCACTCAAACTCCTTGATCTTCATCATCACTGCTTAGCAATTGGACAAGAAACTAACTATACCTATATTGTCATGGCTCCCCTTCAATCTTTCCTAGTATGTATTGCAGTGGTAGTTTCCATTACTGTAATACCAACGTCTGCACAACTAAGTGCTGGTTTCTACAACAGAGTGTGCCCTCAGGCACTACCAGCCATTAGAAGAGTTGTCAAGCAGGCCATCTTTCGCGAGCCACGAATCGGAGCCTCTCTACTCCGCCTTCACTTCCATGACTGCTTTGTTAATGGCTGTGATGGATCAATTCTACTTGATGACACTTCGAGCTTCACTGGTGAGAAGACAGCTTTCCCAAATGTGAATTCAGTAAGGGGATTCGATGTGATCGACGATATAAAAAACGCCGTGGACAAAGCTTGCAAACGCAGTGTGGTCTCATGTGCTGATATATTAGCAGTTGCAGCTCGTGATTCTGTATTCCTTCTGGGTGGACCTCTTTACCAAGTCCCGTTAGGAAGAAGAGATGCAAGAACTGCAAGCTTGAATGATGCAAATAGAAATCTTCCACCCCCAATTTTCAACTTCCCGCAGCTTCTCTCTAACTTCCAAGCTCATGGTCTAGACCTAACAGACTTAGTTGTCCTCTCAGCCGCCCACACCATTGGACTAGCTCGGTGCACCACCTTCCGGGCCAGAATTTACAATGACACCAACATAGACCCCAGCTTCGCAGCCTCAGCGCAACAAAATTGCCCATCAAGTGGAGGAAATGACAATACATTGCCTCTAGATGCAACTACAAGGAGATTTGATACCGTCTACTTTAATTCCTTGTTGAAACAAAAGGGTCTCCTCCATTCTGATCAAGAGCTATATAAGAATAATGGCACCGATAGTGATAAGCTGGTGTTTAAATACAGCAGGAACCCATTTGCTTTTGCTAGAGACTTTTCAGCCTCTATGATCAAGATGGGTAACATCAAGCCTCTTACTGGGAATGATGGAGAATTAAGATTGAACTGTCGGAAAATCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

362

Amino Acids

39.68

Weight (kDa)

9.15

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 83 - 323 1.7e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 686
AccB1I GGYRCC 1 cut(s) 935
AccB7I CCANNNNNTGG 1 cut(s) 809
AccI GTMKAC 1 cut(s) 867
AccII CGCG 1 cut(s) 279
AciI CCGC 4 cut(s) 19, 307, 635, 699
AclWI GGATC 1 cut(s) 355
AcsI RAATTY 3 cut(s) 37, 409, 744
AfiI CCNNNNNNNGG 4 cut(s) 290, 735, 809, 1040
AgsI TTSAA 5 cut(s) 137, 592, 628, 886, 1066
AjuI GAANNNNNNNTTGG 2 cut(s) 394, 426
Alw21I GWGCWC 1 cut(s) 728
Alw26I GTCTC 3 cut(s) 487, 902, 987
Alw44I GTGCAC 1 cut(s) 724
AlwI GGATC 1 cut(s) 355
AoxI GGCC 2 cut(s) 267, 738
ApaLI GTGCAC 1 cut(s) 724
ApeKI GCWGC 3 cut(s) 509, 637, 779
ApoI RAATTY 3 cut(s) 37, 409, 744
ArsI GACNNNNNNTTYG 2 cut(s) 758, 790
AspLEI GCGC 1 cut(s) 790
AspS9I GGNCC 2 cut(s) 539, 738
AsuC2I CCSGG 1 cut(s) 737
AsuHPI GGTGA 1 cut(s) 395
AvaII GGWCC 1 cut(s) 539
AxyI CCTNAGG 1 cut(s) 231
BaeGI GKGCMC 2 cut(s) 230, 728
BanI GGYRCC 1 cut(s) 935
BauI CACGAG 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 728
BbvCI CCTCAGC 1 cut(s) 784
BbvI GCAGC 3 cut(s) 521, 649, 791
BccI CCATC 5 cut(s) 278, 338, 811, 1012, 1043
BceAI ACGGC 1 cut(s) 437
BclI TGATCA 2 cut(s) 910, 1011
BcnI CCSGG 1 cut(s) 737
BcoDI GTCTC 3 cut(s) 487, 902, 987
BfaI CTAG 6 cut(s) 9, 146, 668, 716, 836, 990
BisI GCNGC 4 cut(s) 510, 638, 699, 780
BlpI GCTNAGC 1 cut(s) 85
BlsI GCNGC 4 cut(s) 511, 639, 700, 781
Bme1390I CCNGG 1 cut(s) 737
Bme18I GGWCC 1 cut(s) 539
BmgT120I GGNCC 2 cut(s) 539, 738
BmiI GGNNCC 4 cut(s) 129, 295, 937, 974
BmrFI CCNGG 1 cut(s) 737
BmrI ACTGGG 1 cut(s) 1050
BmsI GCATC 3 cut(s) 562, 586, 829
BmuI ACTGGG 1 cut(s) 1050
BpiI GAAGAC 1 cut(s) 395
Bpu10I CCTNAGC 1 cut(s) 784
Bpu1102I GCTNAGC 1 cut(s) 85
BpuMI CCSGG 1 cut(s) 737
BsaBI GATNNNNATC 1 cut(s) 72
BsaI GGTCTC 2 cut(s) 487, 902
BsaJI CCNNGG 1 cut(s) 453
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 4 cut(s) 290, 735, 809, 1040
Bse1I ACTGG 2 cut(s) 385, 1045
Bse21I CCTNAGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 827
Bse8I GATNNNNATC 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 453
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 4 cut(s) 290, 735, 809, 1040
BseMI GCAATG 1 cut(s) 827
BseMII CTCAG 3 cut(s) 245, 708, 798
BseNI ACTGG 2 cut(s) 385, 1045
BseRI GAGGAG 1 cut(s) 890
BseSI GKGCMC 2 cut(s) 230, 728
BseXI GCAGC 3 cut(s) 521, 649, 791
BseYI CCCAGC 1 cut(s) 770
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 279
BshFI GGCC 2 cut(s) 269, 740
BshNI GGYRCC 1 cut(s) 935
BsiHKAI GWGCWC 1 cut(s) 728
BsiSI CCGG 1 cut(s) 736
BslFI GGGAC 1 cut(s) 539
BslI CCNNNNNNNGG 4 cut(s) 290, 735, 809, 1040
BsmAI GTCTC 3 cut(s) 487, 902, 987
BsmFI GGGAC 1 cut(s) 539
BsnI GGCC 2 cut(s) 269, 740
Bso31I GGTCTC 2 cut(s) 487, 902
Bsp1286I GDGCHC 2 cut(s) 230, 728
Bsp143I GATC 5 cut(s) 67, 347, 432, 910, 1011
Bsp1720I GCTNAGC 1 cut(s) 85
Bsp68I TCGCGA 1 cut(s) 279
BspACI CCGC 4 cut(s) 19, 307, 635, 699
BspANI GGCC 2 cut(s) 269, 740
BspCNI CTCAG 3 cut(s) 244, 707, 797
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 4 cut(s) 129, 295, 937, 974
BspPI GGATC 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 935
BspTNI GGTCTC 2 cut(s) 487, 902
BsrDI GCAATG 1 cut(s) 827
BsrI ACTGG 2 cut(s) 385, 1045
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 5 cut(s) 67, 347, 432, 910, 1011
BssSI CACGAG 1 cut(s) 513
Bst2BI CACGAG 1 cut(s) 513
Bst4CI ACNGT 3 cut(s) 178, 865, 1070
Bst6I CTCTTC 2 cut(s) 247, 562
BstAPI GCANNNNNTGC 1 cut(s) 581
BstC8I GCNNGC 4 cut(s) 267, 281, 466, 586
BstDEI CTNAG 6 cut(s) 85, 200, 231, 682, 694, 784
BstDSI CCRYGG 1 cut(s) 453
BstFNI CGCG 1 cut(s) 279
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 5 cut(s) 70, 350, 435, 913, 1014
BstMAI GTCTC 3 cut(s) 487, 902, 987
BstMBI GATC 5 cut(s) 67, 347, 432, 910, 1011
BstMWI GCNNNNNNNGC 5 cut(s) 18, 242, 509, 581, 785
BstSCI CCNGG 1 cut(s) 735
BstSLI GKGCMC 2 cut(s) 230, 728
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 3 cut(s) 521, 649, 791
BstV2I GAAGAC 1 cut(s) 395
BstXI CCANNNNNNTGG 2 cut(s) 662, 710
Bsu36I CCTNAGG 1 cut(s) 231
BsuRI GGCC 2 cut(s) 269, 740
BtgI CCRYGG 1 cut(s) 453
BtsI GCAGTG 3 cut(s) 79, 165, 481
BtsIMutI CAGTG 4 cut(s) 79, 165, 378, 481
BtuMI TCGCGA 1 cut(s) 279
Cac8I GCNNGC 4 cut(s) 267, 281, 466, 586
CfoI GCGC 1 cut(s) 790
Cfr13I GGNCC 2 cut(s) 539, 738
CviAII CATG 4 cut(s) 124, 320, 486, 662
DdeI CTNAG 6 cut(s) 85, 200, 231, 682, 694, 784
DpnI GATC 5 cut(s) 69, 349, 434, 912, 1013
DpnII GATC 5 cut(s) 67, 347, 432, 910, 1011
DraI TTTAAA 1 cut(s) 961
DrdI GACNNNNNNGTC 1 cut(s) 686
DseDI GACNNNNNNGTC 1 cut(s) 686
Eam1104I CTCTTC 2 cut(s) 247, 562
EarI CTCTTC 2 cut(s) 247, 562
EciI GGCGGA 2 cut(s) 8, 296
Eco31I GGTCTC 2 cut(s) 487, 902
Eco47I GGWCC 1 cut(s) 539
Eco81I CCTNAGG 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 409
FaeI CATG 4 cut(s) 127, 323, 489, 665
FaqI GGGAC 1 cut(s) 539
FatI CATG 4 cut(s) 123, 319, 485, 661
FauI CCCGC 1 cut(s) 642
FbaI TGATCA 2 cut(s) 910, 1011
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 4 cut(s) 510, 638, 699, 780
Fsp4HI GCNGC 4 cut(s) 510, 638, 699, 780
FspBI CTAG 6 cut(s) 9, 146, 668, 716, 836, 990
GlaI GCGC 1 cut(s) 789
GluI GCNGC 4 cut(s) 510, 638, 699, 780
GsaI CCCAGC 1 cut(s) 774
HaeIII GGCC 2 cut(s) 269, 740
HapII CCGG 1 cut(s) 736
HhaI GCGC 1 cut(s) 790
Hin1II CATG 4 cut(s) 127, 323, 489, 665
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HindIII AAGCTT 2 cut(s) 462, 586
HinfI GANTC 3 cut(s) 288, 423, 518
HpaII CCGG 1 cut(s) 736
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 4 cut(s) 457, 539, 726, 868
Hpy188I TCNGA 3 cut(s) 293, 910, 1074
Hpy188III TCNNGA 6 cut(s) 278, 515, 668, 836, 914, 1015
Hpy8I GTNNAC 4 cut(s) 457, 539, 726, 868
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 4 cut(s) 143, 320, 539, 742
HpyCH4III ACNGT 3 cut(s) 178, 865, 1070
HpyCH4IV ACGT 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 242, 509, 581, 785
HpyF3I CTNAG 6 cut(s) 85, 200, 231, 682, 694, 784
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 4 cut(s) 127, 323, 489, 665
HspAI GCGC 1 cut(s) 788
Ksp22I TGATCA 2 cut(s) 910, 1011
Kzo9I GATC 5 cut(s) 67, 347, 432, 910, 1011
LmnI GCTCC 2 cut(s) 133, 293
Lsp1109I GCAGC 3 cut(s) 521, 649, 791
LweI GCATC 3 cut(s) 562, 586, 829
MaeI CTAG 6 cut(s) 9, 146, 668, 716, 836, 990
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 1022
MalI GATC 5 cut(s) 69, 349, 434, 912, 1013
MboI GATC 5 cut(s) 67, 347, 432, 910, 1011
MboII GAAGA 6 cut(s) 62, 264, 400, 576, 579, 602
MfeI CAATTG 1 cut(s) 90
MhlI GDGCHC 2 cut(s) 230, 728
MmeI TCCRAC 1 cut(s) 1052
MseI TTAA 4 cut(s) 333, 873, 960, 1058
MslI CAYNNNNRTG 1 cut(s) 318
MspI CCGG 1 cut(s) 736
MspR9I CCNGG 1 cut(s) 737
MunI CAATTG 1 cut(s) 90
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 5 cut(s) 18, 242, 509, 581, 785
NciI CCSGG 1 cut(s) 737
NdeII GATC 5 cut(s) 67, 347, 432, 910, 1011
NlaIII CATG 4 cut(s) 127, 323, 489, 665
NlaIV GGNNCC 4 cut(s) 129, 295, 937, 974
NruI TCGCGA 1 cut(s) 279
PcsI WCGNNNNNNNCGW 2 cut(s) 283, 432
PfeI GAWTC 3 cut(s) 288, 423, 518
PflMI CCANNNNNTGG 1 cut(s) 809
PkrI GCNGC 4 cut(s) 511, 639, 700, 781
PspFI CCCAGC 1 cut(s) 770
PspN4I GGNNCC 4 cut(s) 129, 295, 937, 974
PspPI GGNCC 2 cut(s) 539, 738
RruI TCGCGA 1 cut(s) 279
RseI CAYNNNNRTG 1 cut(s) 318
SaqAI TTAA 4 cut(s) 333, 873, 960, 1058
SatI GCNGC 4 cut(s) 510, 638, 699, 780
Sau3AI GATC 5 cut(s) 67, 347, 432, 910, 1011
Sau96I GGNCC 2 cut(s) 539, 738
ScrFI CCNGG 1 cut(s) 737
SduI GDGCHC 2 cut(s) 230, 728
SfaNI GCATC 3 cut(s) 562, 586, 829
SinI GGWCC 1 cut(s) 539
SmiMI CAYNNNNRTG 1 cut(s) 318
SsiI CCGC 4 cut(s) 19, 307, 635, 699
SspMI CTAG 6 cut(s) 9, 146, 668, 716, 836, 990
StyD4I CCNGG 1 cut(s) 735
TaaI ACNGT 3 cut(s) 178, 865, 1070
TaiI ACGT 1 cut(s) 191
TaqI TCGA 3 cut(s) 371, 426, 435
TauI GCSGC 1 cut(s) 701
TfiI GAWTC 3 cut(s) 288, 423, 518
Tru1I TTAA 4 cut(s) 333, 873, 960, 1058
Tru9I TTAA 4 cut(s) 333, 873, 960, 1058
TscAI CASTG 4 cut(s) 86, 165, 385, 481
TseI GCWGC 3 cut(s) 509, 637, 779
TspDTI ATGAA 1 cut(s) 62
TspRI CASTG 4 cut(s) 86, 165, 385, 481
Van91I CCANNNNNTGG 1 cut(s) 809
VneI GTGCAC 1 cut(s) 724
VpaK11BI GGWCC 1 cut(s) 539
XapI RAATTY 3 cut(s) 37, 409, 744
XbaI TCTAGA 2 cut(s) 667, 835
XmiI GTMKAC 1 cut(s) 867
XspI CTAG 6 cut(s) 9, 146, 668, 716, 836, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.