Rw5G043990

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003466
Physical Location & Seq
Reverse (-)
77292971 .. 77299304
6334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G043990.1

Sequence Viewer

Length: 984 bp
ATGGCTGGTCAATCCGTCTCTGTTTGGGTCGTTATTGTTGCTGCAGTAGCTATTGTAATGATCCCTACGTGTACTACAGCACAACTTGATACCGATGTATATATATATATGAAAGCATGTCCTCAGGCATTGCCGATGATCAGATCAGTTGTCAAATCAGCGATTAATCGCGAGGCACGCATTGGAGCATCGCTACTACGACTTCACTTCCATGACTGCTTTGTGAATGGGTGTGATGGATCAGTGTTGCTGGATGACACTGCTAACTTCACTGGGGAGAAGACGGCACTTCCAAATCTGAACTCCATTAGAGGTTTTGGCGTAGTCGATGATATTAAACCAAACCTCAATAGCGTTTGCTGTGGAAATGTGGTCTCATGTGCAGACATCTTAGCTGTTGCAGCTCGTGACTCCGTTGAGATTTTGAGAGGCCCGTCCTATTCCTATGAAGTATTATTGGGTAGAAGAGATGCAACAACTACAAGCATAAATGATGCCAACAGAAACCTTCCTCCTCCGTTTTTCAACTTCCCTCAACTGCTTTCCAACTTTCAATCCCATGGTTTAGACCTACAAGACCTAGTCCTTCTCTCGGCGGGCCATACCATCGGACTAGCTAAGTGCACCACCTTCCGGGCAAGGATTTACAACGAAACCAACATAGACCCTGACTTTGCAGCCTCCCTAAAACAGGGTTGTCCGGCAAACGGTGGGGACAACAACATGGCACCTCTGGACTCAACTACAGCGAAATTCGACACTGTTTACTTCAAGGCTTTGCTAGAGAAAAAGGGTCTACTCCACTCTGACCAGGAGCTCTTTAAAGGCGATGGTAGTGACAGTGATAACCTGGTGCAGCATTACGCTAACAACCCGAACGACTTTGCAGTTGATTTTGGAGCTTCCATGATCAAGATGGGTAACATGAAGCCTCTCACTGGATCTGATGGTGAGATTAGACTCAACTGCAGGAAAATCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

327

Amino Acids

35.34

Weight (kDa)

5.5

Isoelectric Point (pI)

30.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 47 - 291 1.1e-77 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 727
AccI GTMKAC 1 cut(s) 796
AccII CGCG 1 cut(s) 171
AciI CCGC 1 cut(s) 596
AclWI GGATC 3 cut(s) 55, 247, 949
AcsI RAATTY 1 cut(s) 752
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 5 cut(s) 592, 633, 691, 707, 938
AflIII ACRYGT 1 cut(s) 68
AgsI TTSAA 3 cut(s) 526, 554, 772
AjnI CCWGG 2 cut(s) 810, 849
AluBI AGCT 6 cut(s) 50, 395, 404, 617, 817, 902
AluI AGCT 6 cut(s) 50, 395, 404, 617, 817, 902
Alw21I GWGCWC 2 cut(s) 626, 819
Alw26I GTCTC 2 cut(s) 22, 379
Alw44I GTGCAC 1 cut(s) 622
AlwI GGATC 3 cut(s) 55, 247, 949
AoxI GGCC 2 cut(s) 430, 598
ApaLI GTGCAC 1 cut(s) 622
ApeKI GCWGC 4 cut(s) 41, 401, 677, 856
ApoI RAATTY 1 cut(s) 752
ArsI GACNNNNNNTTYG 2 cut(s) 656, 688
AseI ATTAAT 1 cut(s) 165
AspS9I GGNCC 2 cut(s) 431, 598
AsuC2I CCSGG 1 cut(s) 635
AsuHPI GGTGA 1 cut(s) 962
AxyI CCTNAGG 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 626
BaeI ACNNNNGTAYC 2 cut(s) 81, 114
BanI GGYRCC 1 cut(s) 727
BanII GRGCYC 1 cut(s) 819
BauI CACGAG 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 287
Bbv12I GWGCWC 2 cut(s) 626, 819
BbvI GCAGC 4 cut(s) 28, 413, 689, 868
BccI CCATC 5 cut(s) 230, 614, 824, 910, 941
BceAI ACGGC 1 cut(s) 300
BciT130I CCWGG 2 cut(s) 812, 851
BclI TGATCA 2 cut(s) 138, 909
BcnI CCSGG 1 cut(s) 635
BcoDI GTCTC 2 cut(s) 22, 379
BfaI CTAG 4 cut(s) 581, 614, 782, 982
BfmI CTRYAG 4 cut(s) 42, 75, 744, 967
BisI GCNGC 4 cut(s) 42, 402, 678, 857
BlsI GCNGC 4 cut(s) 43, 403, 679, 858
Bme1390I CCNGG 3 cut(s) 635, 812, 851
BmgT120I GGNCC 2 cut(s) 431, 598
BmiI GGNNCC 1 cut(s) 729
BmrFI CCNGG 3 cut(s) 635, 812, 851
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 3 cut(s) 197, 460, 484
BmuI ACTGGG 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 635
BsaAI YACGTR 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 379
BsaJI CCNNGG 1 cut(s) 559
Bsc4I CCNNNNNNNGG 5 cut(s) 592, 633, 691, 707, 938
Bse1I ACTGG 2 cut(s) 277, 943
Bse21I CCTNAGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 128
BseBI CCWGG 2 cut(s) 812, 851
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 5 cut(s) 592, 633, 691, 707, 938
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 2 cut(s) 277, 943
BseRI GAGGAG 1 cut(s) 504
BseSI GKGCMC 1 cut(s) 626
BseXI GCAGC 4 cut(s) 28, 413, 689, 868
BsgI GTGCAG 2 cut(s) 402, 875
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 2 cut(s) 432, 600
BshNI GGYRCC 1 cut(s) 727
BsiHKAI GWGCWC 2 cut(s) 626, 819
BsiSI CCGG 2 cut(s) 634, 701
BslFI GGGAC 1 cut(s) 728
BslI CCNNNNNNNGG 5 cut(s) 592, 633, 691, 707, 938
BsmAI GTCTC 2 cut(s) 22, 379
BsmBI CGTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 728
BsnI GGCC 2 cut(s) 432, 600
Bso31I GGTCTC 1 cut(s) 379
Bsp1286I GDGCHC 2 cut(s) 626, 819
Bsp143I GATC 6 cut(s) 60, 138, 143, 239, 909, 941
Bsp19I CCATGG 1 cut(s) 559
Bsp68I TCGCGA 1 cut(s) 171
BspACI CCGC 1 cut(s) 596
BspANI GGCC 2 cut(s) 432, 600
BspCNI CTCAG 1 cut(s) 136
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 729
BspMAI CTGCAG 2 cut(s) 46, 971
BspPI GGATC 3 cut(s) 55, 247, 949
BspT107I GGYRCC 1 cut(s) 727
BspTNI GGTCTC 1 cut(s) 379
BsrDI GCAATG 1 cut(s) 128
BsrI ACTGG 2 cut(s) 277, 943
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 6 cut(s) 60, 138, 143, 239, 909, 941
BssSI CACGAG 1 cut(s) 405
BssT1I CCWWGG 1 cut(s) 559
Bst2BI CACGAG 1 cut(s) 405
Bst2UI CCWGG 2 cut(s) 812, 851
Bst4CI ACNGT 3 cut(s) 710, 763, 842
Bst6I CTCTTC 1 cut(s) 460
BstBAI YACGTR 1 cut(s) 69
BstC8I GCNNGC 2 cut(s) 178, 598
BstDEI CTNAG 3 cut(s) 123, 391, 618
BstDSI CCRYGG 1 cut(s) 559
BstENI CCTNNNNNAGG 1 cut(s) 689
BstF5I GGATG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 171
BstKTI GATC 6 cut(s) 63, 141, 146, 242, 912, 944
BstMAI GTCTC 2 cut(s) 22, 379
BstMBI GATC 6 cut(s) 60, 138, 143, 239, 909, 941
BstMWI GCNNNNNNNGC 3 cut(s) 47, 177, 401
BstNI CCWGG 2 cut(s) 812, 851
BstNSI RCATGY 1 cut(s) 120
BstSCI CCNGG 3 cut(s) 633, 810, 849
BstSFI CTRYAG 4 cut(s) 42, 75, 744, 967
BstSLI GKGCMC 1 cut(s) 626
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 4 cut(s) 28, 413, 689, 868
BstV2I GAAGAC 1 cut(s) 287
BstX2I RGATCY 1 cut(s) 941
BstYI RGATCY 1 cut(s) 941
Bsu36I CCTNAGG 1 cut(s) 123
BsuRI GGCC 2 cut(s) 432, 600
BtgI CCRYGG 1 cut(s) 559
BtgZI GCGATG 2 cut(s) 174, 843
BtsCI GGATG 1 cut(s) 259
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 6 cut(s) 249, 258, 270, 759, 847, 936
BtuMI TCGCGA 1 cut(s) 171
Cac8I GCNNGC 2 cut(s) 178, 598
Cfr13I GGNCC 2 cut(s) 431, 598
CsiI ACCWGGT 1 cut(s) 849
Csp6I GTAC 1 cut(s) 72
CviAII CATG 7 cut(s) 117, 212, 378, 560, 724, 907, 925
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 3 cut(s) 123, 391, 618
DpnI GATC 6 cut(s) 62, 140, 145, 241, 911, 943
DpnII GATC 6 cut(s) 60, 138, 143, 239, 909, 941
DraI TTTAAA 1 cut(s) 823
Eam1104I CTCTTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 460
Ecl136II GAGCTC 1 cut(s) 817
Eco130I CCWWGG 1 cut(s) 559
Eco24I GRGCYC 1 cut(s) 819
Eco31I GGTCTC 1 cut(s) 379
Eco53kI GAGCTC 1 cut(s) 817
Eco81I CCTNAGG 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 817
EcoNI CCTNNNNNAGG 1 cut(s) 689
EcoRII CCWGG 2 cut(s) 810, 849
EcoT14I CCWWGG 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 819
ErhI CCWWGG 1 cut(s) 559
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 7 cut(s) 120, 215, 381, 563, 727, 910, 928
FaqI GGGAC 1 cut(s) 728
FatI CATG 7 cut(s) 116, 211, 377, 559, 723, 906, 924
FauI CCCGC 1 cut(s) 589
FbaI TGATCA 2 cut(s) 138, 909
FblI GTMKAC 1 cut(s) 796
Fnu4HI GCNGC 4 cut(s) 42, 402, 678, 857
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 819
Fsp4HI GCNGC 4 cut(s) 42, 402, 678, 857
FspBI CTAG 4 cut(s) 581, 614, 782, 982
GluI GCNGC 4 cut(s) 42, 402, 678, 857
HaeIII GGCC 2 cut(s) 432, 600
HapII CCGG 2 cut(s) 634, 701
Hin1II CATG 7 cut(s) 120, 215, 381, 563, 727, 910, 928
HinfI GANTC 3 cut(s) 410, 737, 960
HpaII CCGG 2 cut(s) 634, 701
HphI GGTGA 1 cut(s) 962
Hpy166II GTNNAC 4 cut(s) 72, 624, 766, 797
Hpy188I TCNGA 5 cut(s) 143, 300, 611, 808, 946
Hpy188III TCNNGA 4 cut(s) 170, 407, 734, 913
Hpy8I GTNNAC 4 cut(s) 72, 624, 766, 797
HpyAV CCTTC 3 cut(s) 518, 596, 640
HpyCH4III ACNGT 3 cut(s) 710, 763, 842
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 9 cut(s) 44, 383, 401, 473, 624, 677, 856, 887, 969
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 177, 401
HpyF3I CTNAG 3 cut(s) 123, 391, 618
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 7 cut(s) 120, 215, 381, 563, 727, 910, 928
Ksp22I TGATCA 2 cut(s) 138, 909
Kzo9I GATC 6 cut(s) 60, 138, 143, 239, 909, 941
LmnI GCTCC 3 cut(s) 185, 814, 899
Lsp1109I GCAGC 4 cut(s) 28, 413, 689, 868
LweI GCATC 3 cut(s) 197, 460, 484
MabI ACCWGGT 1 cut(s) 849
MaeI CTAG 4 cut(s) 581, 614, 782, 982
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 3 cut(s) 407, 836, 920
MalI GATC 6 cut(s) 62, 140, 145, 241, 911, 943
MboI GATC 6 cut(s) 60, 138, 143, 239, 909, 941
MboII GAAGA 2 cut(s) 292, 477
MflI RGATCY 1 cut(s) 941
MhlI GDGCHC 2 cut(s) 626, 819
MluCI AATT 1 cut(s) 752
MlyI GAGTC 3 cut(s) 404, 731, 954
MmeI TCCRAC 1 cut(s) 570
MseI TTAA 3 cut(s) 165, 336, 822
MslI CAYNNNNRTG 1 cut(s) 210
MspI CCGG 2 cut(s) 634, 701
MspR9I CCNGG 3 cut(s) 635, 812, 851
MvaI CCWGG 2 cut(s) 812, 851
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 47, 177, 401
NciI CCSGG 1 cut(s) 635
NcoI CCATGG 1 cut(s) 559
NdeII GATC 6 cut(s) 60, 138, 143, 239, 909, 941
NlaIII CATG 7 cut(s) 120, 215, 381, 563, 727, 910, 928
NlaIV GGNNCC 1 cut(s) 729
NmeAIII GCCGAG 1 cut(s) 572
NmuCI GTSAC 2 cut(s) 407, 836
NruI TCGCGA 1 cut(s) 171
NspI RCATGY 1 cut(s) 120
PflFI GACNNNGTC 1 cut(s) 581
PkrI GCNGC 4 cut(s) 43, 403, 679, 858
PleI GAGTC 3 cut(s) 404, 731, 954
PpsI GAGTC 3 cut(s) 404, 731, 954
Ppu21I YACGTR 1 cut(s) 69
PshBI ATTAAT 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 819
Psp6I CCWGG 2 cut(s) 810, 849
PspGI CCWGG 2 cut(s) 810, 849
PspN4I GGNNCC 1 cut(s) 729
PspPI GGNCC 2 cut(s) 431, 598
PstI CTGCAG 2 cut(s) 46, 971
PsuI RGATCY 1 cut(s) 941
PsyI GACNNNGTC 1 cut(s) 581
RruI TCGCGA 1 cut(s) 171
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 210
SacI GAGCTC 1 cut(s) 819
SaqAI TTAA 3 cut(s) 165, 336, 822
SatI GCNGC 4 cut(s) 42, 402, 678, 857
Sau3AI GATC 6 cut(s) 60, 138, 143, 239, 909, 941
Sau96I GGNCC 2 cut(s) 431, 598
SchI GAGTC 3 cut(s) 404, 731, 954
ScrFI CCNGG 3 cut(s) 635, 812, 851
SduI GDGCHC 2 cut(s) 626, 819
SexAI ACCWGGT 1 cut(s) 849
SfaNI GCATC 3 cut(s) 197, 460, 484
SfcI CTRYAG 4 cut(s) 42, 75, 744, 967
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 1 cut(s) 752
SsiI CCGC 1 cut(s) 596
SspMI CTAG 4 cut(s) 581, 614, 782, 982
SstI GAGCTC 1 cut(s) 819
StyD4I CCNGG 3 cut(s) 633, 810, 849
StyI CCWWGG 1 cut(s) 559
TaaI ACNGT 3 cut(s) 710, 763, 842
TaiI ACGT 1 cut(s) 71
TaqI TCGA 2 cut(s) 327, 756
TasI AATT 1 cut(s) 752
TatI WGTACW 1 cut(s) 71
Tru1I TTAA 3 cut(s) 165, 336, 822
Tru9I TTAA 3 cut(s) 165, 336, 822
TscAI CASTG 6 cut(s) 249, 265, 277, 766, 847, 943
TseFI GTSAC 2 cut(s) 407, 836
TseI GCWGC 4 cut(s) 41, 401, 677, 856
Tsp45I GTSAC 2 cut(s) 407, 836
TspDTI ATGAA 3 cut(s) 125, 462, 941
TspGWI ACGGA 3 cut(s) 4, 403, 507
TspRI CASTG 6 cut(s) 249, 265, 277, 766, 847, 943
Tth111I GACNNNGTC 1 cut(s) 581
VneI GTGCAC 1 cut(s) 622
VspI ATTAAT 1 cut(s) 165
XagI CCTNNNNNAGG 1 cut(s) 689
XapI RAATTY 1 cut(s) 752
XceI RCATGY 1 cut(s) 120
XcmI CCANNNNNNNNNTGG 1 cut(s) 913
XmiI GTMKAC 1 cut(s) 796
XspI CTAG 4 cut(s) 581, 614, 782, 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.