FvH4_3g40160

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003466
Physical Location & Seq
Forward (+)
33948274 .. 33949933
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40160.t1

Sequence Viewer

Length: 963 bp
ATGGCTACATTTCAATCTTTCTTAGTCTGTATCACCGTTTTAGCTGCCATGGTTATAACACCATCATCTGCACAACTAAATGCTTGTTTCTACGACAACGTCTGCCCTCAGGCACTTCCAAAAATCAGAGAAATTGTCCGTCAAGCTGTCAAAGATGAACCGCGTATGGGAGCTTCTCTACTGCGTTTGCACTTCCACGATTGCTTTGTTAACGGTTGCGATGGTTCAGTTCTGCTAGATGACACGTCGACCTTCACCGGTGAGAAGACAGCCGTACCAAATGCCGGATCAATCAGAGGATTCGAAGTGATTGACAAGATCAAAGCAGCTGTCGACAAATCTTGTAAGAAAACTGTTGTCTCATGCGCTGATATATTAGCCGTTGCAGCTCGTGATTCTGTATACCTTCTAGGAGGTCCTTCTTACGAGGTACAACTGGGCAGAAGAGATGCAACAACAGCAAGCGCGAACGATGCGAACAGAAACCTGCCTCCCCCATTTTTCAGCTTCTCACAGCTTCTATCTAGCTTCCAATCTCATGGTCTTGACCTCAAAGACTTAGTTCTCCTCTCAAGTGCTCACACCATTGGACAAGCTCGGTGCACTACCTTCAAAGACAGGATTTACAATGATACCAACATAAACGCCAACTTTGCAGCTTCTGCTAAACAAAACTGCCCACGAACTGGTGGAGATAACAATTTACGGCCACTTGATGCAACCCCGAAGAAATTCGACACAACGTATTTTAGTTCCTTGTTGAAATCAAAGGGCCTCCTTCACTCTGATCAAGAGTTGTTCAAAGGCGATGGAAGTGACAGTGATAAGTTGGTGCAACACTACAGCACAAGCCTATATGACTTTTGGAACGACTTTTCGGTTTCAATGATCAAGATGGGTAATATTAAGCCTCTTACTGGAAATGCTGGTGAAGTAAGAGTCAACTGCAGGAAGATCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

321

Amino Acids

34.92

Weight (kDa)

8.27

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 283 2.4e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 495
AccB7I CCANNNNNTGG 1 cut(s) 686
AccI GTMKAC 3 cut(s) 248, 333, 402
AccII CGCG 2 cut(s) 163, 467
AciI CCGC 1 cut(s) 161
AclWI GGATC 1 cut(s) 295
AcoI YGGCCR 1 cut(s) 707
AcsI RAATTY 1 cut(s) 731
AfaI GTAC 2 cut(s) 276, 432
AfiI CCNNNNNNNGG 4 cut(s) 167, 284, 686, 917
AflIII ACRYGT 1 cut(s) 243
AgeI ACCGGT 1 cut(s) 257
AgsI TTSAA 5 cut(s) 14, 613, 763, 802, 885
AjiI CACGTC 1 cut(s) 246
Alw21I GWGCWC 2 cut(s) 580, 605
Alw26I GTCTC 1 cut(s) 364
Alw44I GTGCAC 1 cut(s) 601
AlwI GGATC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 662
AoxI GGCC 2 cut(s) 707, 772
ApaLI GTGCAC 1 cut(s) 601
ApeKI GCWGC 4 cut(s) 44, 326, 386, 656
ApoI RAATTY 1 cut(s) 731
ArsI GACNNNNNNTTYG 2 cut(s) 315, 347
AsiGI ACCGGT 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 731
AspLEI GCGC 2 cut(s) 368, 467
AspS9I GGNCC 2 cut(s) 416, 772
AsuHPI GGTGA 4 cut(s) 25, 247, 272, 941
AsuII TTCGAA 1 cut(s) 303
AvaII GGWCC 1 cut(s) 416
AxyI CCTNAGG 1 cut(s) 108
BaeGI GKGCMC 1 cut(s) 605
BaeI ACNNNNGTAYC 2 cut(s) 258, 291
BarI GAAGNNNNNNTAC 2 cut(s) 157, 189
BauI CACGAG 1 cut(s) 390
BbsI GAAGAC 1 cut(s) 272
Bbv12I GWGCWC 2 cut(s) 580, 605
BbvI GCAGC 4 cut(s) 31, 338, 398, 668
BccI CCATC 4 cut(s) 70, 215, 803, 889
BceAI ACGGC 3 cut(s) 257, 365, 722
BclI TGATCA 2 cut(s) 787, 888
BcoDI GTCTC 1 cut(s) 364
BfaI CTAG 3 cut(s) 236, 410, 525
BfmI CTRYAG 2 cut(s) 841, 946
BfuAI ACCTGC 1 cut(s) 495
BisI GCNGC 4 cut(s) 45, 327, 387, 657
BlsI GCNGC 4 cut(s) 46, 328, 388, 658
Bme18I GGWCC 1 cut(s) 416
BmgBI CACGTC 1 cut(s) 246
BmgT120I GGNCC 2 cut(s) 416, 772
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 3 cut(s) 439, 463, 706
BmuI ACTGGG 1 cut(s) 446
BpiI GAAGAC 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 556
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 4 cut(s) 167, 284, 686, 917
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 3 cut(s) 441, 691, 922
Bse21I CCTNAGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 48
BseLI CCNNNNNNNGG 4 cut(s) 167, 284, 686, 917
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 3 cut(s) 441, 691, 922
BseRI GAGGAG 1 cut(s) 557
BseSI GKGCMC 1 cut(s) 605
BseXI GCAGC 4 cut(s) 31, 338, 398, 668
BsgI GTGCAG 1 cut(s) 54
Bsh1236I CGCG 2 cut(s) 163, 467
BshFI GGCC 2 cut(s) 709, 774
BshTI ACCGGT 1 cut(s) 257
BsiHKAI GWGCWC 2 cut(s) 580, 605
BsiSI CCGG 2 cut(s) 258, 285
BslI CCNNNNNNNGG 4 cut(s) 167, 284, 686, 917
BsmAI GTCTC 1 cut(s) 364
BsnI GGCC 2 cut(s) 709, 774
Bsp119I TTCGAA 1 cut(s) 303
Bsp1286I GDGCHC 2 cut(s) 580, 605
Bsp143I GATC 5 cut(s) 287, 318, 787, 888, 954
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 1 cut(s) 161
BspANI GGCC 2 cut(s) 709, 774
BspCNI CTCAG 1 cut(s) 121
BspFNI CGCG 2 cut(s) 163, 467
BspMAI CTGCAG 1 cut(s) 950
BspMI ACCTGC 1 cut(s) 495
BspPI GGATC 1 cut(s) 295
BspT104I TTCGAA 1 cut(s) 303
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 3 cut(s) 441, 691, 922
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 5 cut(s) 287, 318, 787, 888, 954
BssNAI GTATAC 1 cut(s) 403
BssSI CACGAG 1 cut(s) 390
BssT1I CCWWGG 1 cut(s) 48
Bst1107I GTATAC 1 cut(s) 403
Bst2BI CACGAG 1 cut(s) 390
Bst4CI ACNGT 4 cut(s) 37, 215, 355, 821
Bst6I CTCTTC 1 cut(s) 439
BstAPI GCANNNNNTGC 1 cut(s) 662
BstBI TTCGAA 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 3 cut(s) 22, 108, 559
BstDSI CCRYGG 1 cut(s) 48
BstFNI CGCG 2 cut(s) 163, 467
BstHHI GCGC 2 cut(s) 368, 467
BstKTI GATC 5 cut(s) 290, 321, 790, 891, 957
BstMAI GTCTC 1 cut(s) 364
BstMBI GATC 5 cut(s) 287, 318, 787, 888, 954
BstMWI GCNNNNNNNGC 5 cut(s) 386, 458, 473, 653, 662
BstSFI CTRYAG 2 cut(s) 841, 946
BstSLI GKGCMC 1 cut(s) 605
BstUI CGCG 2 cut(s) 163, 467
BstV1I GCAGC 4 cut(s) 31, 338, 398, 668
BstV2I GAAGAC 1 cut(s) 272
BstXI CCANNNNNNTGG 1 cut(s) 539
BstZ17I GTATAC 1 cut(s) 403
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 2 cut(s) 709, 774
BtgI CCRYGG 1 cut(s) 48
BtgZI GCGATG 2 cut(s) 234, 822
BtrI CACGTC 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 826
BveI ACCTGC 1 cut(s) 495
Cac8I GCNNGC 1 cut(s) 463
CaiI CAGNNNCTG 1 cut(s) 662
CfoI GCGC 2 cut(s) 368, 467
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 416, 772
Csp6I GTAC 2 cut(s) 275, 431
CspAI ACCGGT 1 cut(s) 257
CviAII CATG 3 cut(s) 49, 363, 539
CviQI GTAC 2 cut(s) 275, 431
DdeI CTNAG 3 cut(s) 22, 108, 559
DpnI GATC 5 cut(s) 289, 320, 789, 890, 956
DpnII GATC 5 cut(s) 287, 318, 787, 888, 954
EaeI YGGCCR 1 cut(s) 707
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 416
Eco81I CCTNAGG 1 cut(s) 108
EcoO109I RGGNCCY 2 cut(s) 416, 772
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 3 cut(s) 52, 366, 542
FatI CATG 3 cut(s) 48, 362, 538
FbaI TGATCA 2 cut(s) 787, 888
FblI GTMKAC 3 cut(s) 248, 333, 402
Fnu4HI GCNGC 4 cut(s) 45, 327, 387, 657
Fsp4HI GCNGC 4 cut(s) 45, 327, 387, 657
FspBI CTAG 3 cut(s) 236, 410, 525
GlaI GCGC 2 cut(s) 367, 466
GluI GCNGC 4 cut(s) 45, 327, 387, 657
HaeIII GGCC 2 cut(s) 709, 774
HapII CCGG 2 cut(s) 258, 285
HhaI GCGC 2 cut(s) 368, 467
Hin1II CATG 3 cut(s) 52, 366, 542
Hin6I GCGC 2 cut(s) 366, 465
HinP1I GCGC 2 cut(s) 366, 465
HincII GTYRAC 4 cut(s) 211, 249, 334, 943
HindII GTYRAC 4 cut(s) 211, 249, 334, 943
HinfI GANTC 3 cut(s) 300, 395, 939
HpaI GTTAAC 1 cut(s) 211
HpaII CCGG 2 cut(s) 258, 285
HphI GGTGA 4 cut(s) 25, 247, 272, 941
Hpy166II GTNNAC 6 cut(s) 211, 249, 334, 403, 603, 943
Hpy188I TCNGA 3 cut(s) 128, 296, 787
Hpy188III TCNNGA 4 cut(s) 392, 545, 791, 892
Hpy8I GTNNAC 6 cut(s) 211, 249, 334, 403, 603, 943
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 5 cut(s) 262, 416, 429, 619, 788
HpyCH4III ACNGT 4 cut(s) 37, 215, 355, 821
HpyCH4IV ACGT 3 cut(s) 99, 245, 743
HpyCH4V TGCA 9 cut(s) 71, 190, 386, 452, 603, 656, 719, 835, 948
HpyF10VI GCNNNNNNNGC 5 cut(s) 386, 458, 473, 653, 662
HpyF3I CTNAG 3 cut(s) 22, 108, 559
HpySE526I ACGT 3 cut(s) 99, 245, 743
Hsp92II CATG 3 cut(s) 52, 366, 542
HspAI GCGC 2 cut(s) 366, 465
Ksp22I TGATCA 2 cut(s) 787, 888
KspAI GTTAAC 1 cut(s) 211
Kzo9I GATC 5 cut(s) 287, 318, 787, 888, 954
LmnI GCTCC 1 cut(s) 170
Lsp1109I GCAGC 4 cut(s) 31, 338, 398, 668
LweI GCATC 3 cut(s) 439, 463, 706
MaeI CTAG 3 cut(s) 236, 410, 525
MaeII ACGT 3 cut(s) 99, 245, 743
MaeIII GTNAC 1 cut(s) 815
MalI GATC 5 cut(s) 289, 320, 789, 890, 956
MboI GATC 5 cut(s) 287, 318, 787, 888, 954
MboII GAAGA 3 cut(s) 277, 456, 739
MhlI GDGCHC 2 cut(s) 580, 605
MluCI AATT 3 cut(s) 132, 700, 731
MlyI GAGTC 1 cut(s) 948
MnlI CCTC 9 cut(s) 117, 290, 407, 421, 501, 560, 578, 785, 921
MroXI GAANNNNTTC 1 cut(s) 731
MseI TTAA 2 cut(s) 210, 906
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 2 cut(s) 258, 285
MvnI CGCG 2 cut(s) 163, 467
MwoI GCNNNNNNNGC 5 cut(s) 386, 458, 473, 653, 662
NcoI CCATGG 1 cut(s) 48
NdeII GATC 5 cut(s) 287, 318, 787, 888, 954
NlaIII CATG 3 cut(s) 52, 366, 542
NmuCI GTSAC 1 cut(s) 815
NspV TTCGAA 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 731
PfeI GAWTC 2 cut(s) 300, 395
PflFI GACNNNGTC 1 cut(s) 98
PflMI CCANNNNNTGG 1 cut(s) 686
PinAI ACCGGT 1 cut(s) 257
PkrI GCNGC 4 cut(s) 46, 328, 388, 658
PleI GAGTC 1 cut(s) 947
PpsI GAGTC 1 cut(s) 947
PpuMI RGGWCCY 1 cut(s) 416
PsiI TTATAA 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 416
PspPI GGNCC 2 cut(s) 416, 772
PspPPI RGGWCCY 1 cut(s) 416
PstI CTGCAG 1 cut(s) 950
PstNI CAGNNNCTG 1 cut(s) 662
PsyI GACNNNGTC 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 2 cut(s) 276, 432
RsaNI GTAC 2 cut(s) 275, 431
SalI GTCGAC 2 cut(s) 247, 332
SaqAI TTAA 2 cut(s) 210, 906
SatI GCNGC 4 cut(s) 45, 327, 387, 657
Sau3AI GATC 5 cut(s) 287, 318, 787, 888, 954
Sau96I GGNCC 2 cut(s) 416, 772
SchI GAGTC 1 cut(s) 948
SduI GDGCHC 2 cut(s) 580, 605
SfaNI GCATC 3 cut(s) 439, 463, 706
SfcI CTRYAG 2 cut(s) 841, 946
SfuI TTCGAA 1 cut(s) 303
SgrAI CRCCGGYG 1 cut(s) 257
SinI GGWCC 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 571
SmoI CTYRAG 1 cut(s) 571
Sse9I AATT 3 cut(s) 132, 700, 731
SsiI CCGC 1 cut(s) 161
SspI AATATT 1 cut(s) 904
SspMI CTAG 3 cut(s) 236, 410, 525
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 4 cut(s) 37, 215, 355, 821
TaiI ACGT 3 cut(s) 102, 248, 746
TaqI TCGA 4 cut(s) 248, 303, 333, 735
TasI AATT 3 cut(s) 132, 700, 731
TfiI GAWTC 2 cut(s) 300, 395
Tru1I TTAA 2 cut(s) 210, 906
Tru9I TTAA 2 cut(s) 210, 906
TscAI CASTG 1 cut(s) 826
TseFI GTSAC 1 cut(s) 815
TseI GCWGC 4 cut(s) 44, 326, 386, 656
Tsp45I GTSAC 1 cut(s) 815
TspDTI ATGAA 1 cut(s) 171
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 1 cut(s) 826
Tth111I GACNNNGTC 1 cut(s) 98
Van91I CCANNNNNTGG 1 cut(s) 686
VneI GTGCAC 1 cut(s) 601
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 1 cut(s) 731
XmiI GTMKAC 3 cut(s) 248, 333, 402
XmnI GAANNNNTTC 1 cut(s) 731
XspI CTAG 3 cut(s) 236, 410, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.