Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003466

Physical Location & Seq

Genomic Coordinates Forward (+)

5310626 .. 5312104

Gene Structure 1479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1061000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCTGCCCTTCAATCTTTACTAGTATGTATTGTAGTGGCAGTTTCCATTACCGTAATACCAACGTCTGCACAACTAAGTGCTGATTTCTACAACAAAGTGTGCCCTCAGGCACTACCAGCCATTAGAGCAGTTGTCAAGCAGGCCATCTTTCGTGAGCCGCGAATCGGAGCCTCTCTACTCCGCCTTCACTTCCATGACTGCTTTGTTAATGGCTGTGATGGATCAATTCTACTTGATGACACTTCGAGCGTCACTGGTGAGAAGACAGCTCTCCCAAATGTGAATTCAGTGAGGGGATTCGACGTAATTGATGATATAAAAAAGGCCGTGGACAAAGCTTGCAACCGCAGCGTGGTCTCATGTGCTGATATATTAGCAGTTGCAGCTCGTGATTCTGTGTTCCTTCTGGATGGACCTCTTTACCAAGTCCCGTTAGGAAGAAGAGATGCAAGAACTGCAAGCTTGAGTGATGCAAATAGAAATCTTCCACCCCCATTTTTCAACTTCCCGCAGCTTGTCTCTAACTTCCAAGCTCATGGTCTGGACCTAACAGACTTAGTTGTCCTCTCAGCCGCCCACACCATTGGACTAGCTCGGTGCACCACCTTCCGGGCCAGAATTTACAATGACACCAACATAGACCCCAGCTTCGCAGCCTCAGCGCAACAAAATTGCCCATCAAGTGGAGGAAATGACAATACATTGCCACTAGATGCAACTACAAGGAGATTTGATACCGTCTACTTTAATTCCTTGTTGAAACAAAAGGGTCTCCTACATTCTGATCAAGAGCTATTTAAGAATAATGGCACGGATAGTGATAAGCTGGTGTTTAAATACAGCAGGAACCCATTTGCTTTTGCTAGAGACTTTTCAGCCTCTATGATCAAGATGGGTAACCTCAAGCCTCTTACTGGGAATGATGGAGAAGTAAGATTGAACTGTCGGAAAATCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

321

Amino Acids

34.84

Weight (kDa)

8.55

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	42 - 282	2.8e-80	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40120 FvH4_3g40140 FvH4_3g40150 FvH4_3g40160
malus_domestica	MD03G1059000.v1.1 MD11G1061000.v1.1 MD11G1061100.v1.1 MD11G1061200.v1.1
prunus_persica	Prupe.6G044200_v2.0.a1 Prupe.6G044500_v2.0.a1 Prupe.6G044600_v2.0.a1 Prupe.6G044700_v2.0.a1 Prupe.6G044800_v2.0.a1
pyrus_communis	pycom11g05080
rosa_chinensis	RchiOBHm_Chr5g0072301 RchiOBHm_Chr5g0072331 RchiOBHm_Chr5g0072351
rosa_laevigata	RLG00000036292 RLG00000036293
rosa_multiflora	Rmu_co8350947.1_g000001 Rmu_sc0000737.1_g000016 Rmu_sc0008937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008870 Rroxscaffold_1G00008880 Rroxscaffold_1G00008900 Rroxscaffold_1G00008940 Rroxscaffold_1G00008950 Rroxscaffold_1G00008960
rosa_samantha	Rh5AG473600 Rh5BG494100 Rh5CG517800 Rh5CG518100 Rh5DG506000 Rh5DG506200
rosa_wichuraiana	Rw5G043990 Rw5G044010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	563
AccB7I	CCANNNNNTGG	1 cut(s)	686
AccI	GTMKAC	1 cut(s)	744
AccII	CGCG	1 cut(s)	163
AciI	CCGC	5 cut(s)	161, 184, 349, 512, 576
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	2 cut(s)	286, 621
AfiI	CCNNNNNNNGG	5 cut(s)	167, 355, 612, 686, 917
AgsI	TTSAA	4 cut(s)	14, 505, 763, 943
AhlI	ACTAGT	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	271, 303
Alw21I	GWGCWC	1 cut(s)	605
Alw26I	GTCTC	4 cut(s)	364, 526, 779, 864
Alw44I	GTGCAC	1 cut(s)	601
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	3 cut(s)	144, 327, 615
ApaLI	GTGCAC	1 cut(s)	601
ApeKI	GCWGC	5 cut(s)	5, 351, 386, 514, 656
ApoI	RAATTY	2 cut(s)	286, 621
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
AspLEI	GCGC	1 cut(s)	667
AspS9I	GGNCC	3 cut(s)	416, 547, 615
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	416, 547
AxyI	CCTNAGG	1 cut(s)	108
BaeGI	GKGCMC	2 cut(s)	107, 605
BauI	CACGAG	1 cut(s)	390
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	605
BbvCI	CCTCAGC	1 cut(s)	661
BbvI	GCAGC	4 cut(s)	363, 398, 526, 668
BccI	CCATC	6 cut(s)	155, 215, 407, 688, 889, 920
BceAI	ACGGC	1 cut(s)	314
BclI	TGATCA	2 cut(s)	787, 888
BcnI	CCSGG	1 cut(s)	614
BcoDI	GTCTC	4 cut(s)	364, 526, 779, 864
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	4 cut(s)	23, 593, 713, 867
BisI	GCNGC	7 cut(s)	6, 161, 352, 387, 515, 576, 657
BlsI	GCNGC	7 cut(s)	7, 162, 353, 388, 516, 577, 658
Bme1390I	CCNGG	1 cut(s)	614
Bme18I	GGWCC	2 cut(s)	416, 547
BmgT120I	GGNCC	3 cut(s)	416, 547, 615
BmiI	GGNNCC	2 cut(s)	172, 851
BmrFI	CCNGG	1 cut(s)	614
BmrI	ACTGGG	1 cut(s)	927
BmsI	GCATC	3 cut(s)	439, 463, 706
BmuI	ACTGGG	1 cut(s)	927
BpiI	GAAGAC	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	661
BpuEI	CTTGAG	2 cut(s)	487, 890
BpuMI	CCSGG	1 cut(s)	614
BsaI	GGTCTC	2 cut(s)	364, 779
BsaJI	CCNNGG	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	5 cut(s)	167, 355, 612, 686, 917
Bse1I	ACTGG	2 cut(s)	262, 922
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	704
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	5 cut(s)	167, 355, 612, 686, 917
BseMI	GCAATG	1 cut(s)	704
BseMII	CTCAG	3 cut(s)	122, 585, 675
BseNI	ACTGG	2 cut(s)	262, 922
BseSI	GKGCMC	2 cut(s)	107, 605
BseXI	GCAGC	4 cut(s)	363, 398, 526, 668
BseYI	CCCAGC	1 cut(s)	647
BsgI	GTGCAG	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	3 cut(s)	146, 329, 617
BsiHKAI	GWGCWC	1 cut(s)	605
BsiSI	CCGG	1 cut(s)	613
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	5 cut(s)	167, 355, 612, 686, 917
BsmAI	GTCTC	4 cut(s)	364, 526, 779, 864
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	3 cut(s)	146, 329, 617
Bso31I	GGTCTC	2 cut(s)	364, 779
Bsp1286I	GDGCHC	2 cut(s)	107, 605
Bsp143I	GATC	3 cut(s)	224, 787, 888
BspACI	CCGC	5 cut(s)	161, 184, 349, 512, 576
BspANI	GGCC	3 cut(s)	146, 329, 617
BspCNI	CTCAG	3 cut(s)	121, 584, 674
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	172, 851
BspPI	GGATC	1 cut(s)	232
BspTNI	GGTCTC	2 cut(s)	364, 779
BsrDI	GCAATG	1 cut(s)	704
BsrI	ACTGG	2 cut(s)	262, 922
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	3 cut(s)	224, 787, 888
BssSI	CACGAG	1 cut(s)	390
Bst2BI	CACGAG	1 cut(s)	390
Bst4CI	ACNGT	3 cut(s)	55, 742, 947
Bst6I	CTCTTC	1 cut(s)	439
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstC8I	GCNNGC	3 cut(s)	144, 343, 463
BstDEI	CTNAG	5 cut(s)	77, 108, 559, 571, 661
BstDSI	CCRYGG	1 cut(s)	330
BstEII	GGTNACC	1 cut(s)	899
BstF5I	GGATG	1 cut(s)	418
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	667
BstKTI	GATC	3 cut(s)	227, 790, 891
BstMAI	GTCTC	4 cut(s)	364, 526, 779, 864
BstMBI	GATC	3 cut(s)	224, 787, 888
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 128, 351, 386, 458, 662
BstPI	GGTNACC	1 cut(s)	899
BstSCI	CCNGG	1 cut(s)	612
BstSLI	GKGCMC	2 cut(s)	107, 605
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	4 cut(s)	363, 398, 526, 668
BstV2I	GAAGAC	1 cut(s)	272
BstXI	CCANNNNNNTGG	2 cut(s)	539, 587
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	3 cut(s)	146, 329, 617
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	255, 297
Cac8I	GCNNGC	3 cut(s)	144, 343, 463
CfoI	GCGC	1 cut(s)	667
Cfr13I	GGNCC	3 cut(s)	416, 547, 615
CseI	GACGC	1 cut(s)	241
CviAII	CATG	3 cut(s)	197, 363, 539
DdeI	CTNAG	5 cut(s)	77, 108, 559, 571, 661
DpnI	GATC	3 cut(s)	226, 789, 890
DpnII	GATC	3 cut(s)	224, 787, 888
DraI	TTTAAA	1 cut(s)	838
DrdI	GACNNNNNNGTC	1 cut(s)	563
DseDI	GACNNNNNNGTC	1 cut(s)	563
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
EciI	GGCGGA	1 cut(s)	173
Eco31I	GGTCTC	2 cut(s)	364, 779
Eco47I	GGWCC	2 cut(s)	416, 547
Eco81I	CCTNAGG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	899
EcoO65I	GGTNACC	1 cut(s)	899
EcoRI	GAATTC	1 cut(s)	286
FaeI	CATG	3 cut(s)	200, 366, 542
FaiI	YATR	8 cut(s)	28, 198, 320, 364, 374, 540, 641, 887
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	3 cut(s)	196, 362, 538
FauI	CCCGC	1 cut(s)	519
FbaI	TGATCA	2 cut(s)	787, 888
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	7 cut(s)	6, 161, 352, 387, 515, 576, 657
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	7 cut(s)	6, 161, 352, 387, 515, 576, 657
FspBI	CTAG	4 cut(s)	23, 593, 713, 867
GlaI	GCGC	1 cut(s)	666
GluI	GCNGC	7 cut(s)	6, 161, 352, 387, 515, 576, 657
GsaI	CCCAGC	1 cut(s)	651
HaeIII	GGCC	3 cut(s)	146, 329, 617
HapII	CCGG	1 cut(s)	613
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	1 cut(s)	667
Hin1II	CATG	3 cut(s)	200, 366, 542
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HindIII	AAGCTT	2 cut(s)	339, 463
HinfI	GANTC	3 cut(s)	165, 300, 395
HpaII	CCGG	1 cut(s)	613
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	3 cut(s)	334, 603, 745
Hpy188I	TCNGA	3 cut(s)	170, 787, 951
Hpy188III	TCNNGA	6 cut(s)	155, 392, 410, 545, 791, 892
Hpy8I	GTNNAC	3 cut(s)	334, 603, 745
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	4 cut(s)	20, 197, 416, 619
HpyCH4III	ACNGT	3 cut(s)	55, 742, 947
HpyCH4IV	ACGT	2 cut(s)	65, 306
HpyCH4V	TGCA	8 cut(s)	71, 345, 386, 452, 461, 476, 603, 719
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 128, 351, 386, 458, 662
HpyF3I	CTNAG	5 cut(s)	77, 108, 559, 571, 661
HpySE526I	ACGT	2 cut(s)	65, 306
Hsp92II	CATG	3 cut(s)	200, 366, 542
HspAI	GCGC	1 cut(s)	665
Ksp22I	TGATCA	2 cut(s)	787, 888
Kzo9I	GATC	3 cut(s)	224, 787, 888
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	4 cut(s)	363, 398, 526, 668
LweI	GCATC	3 cut(s)	439, 463, 706
MaeI	CTAG	4 cut(s)	23, 593, 713, 867
MaeII	ACGT	2 cut(s)	65, 306
MaeIII	GTNAC	2 cut(s)	253, 899
MalI	GATC	3 cut(s)	226, 789, 890
MboI	GATC	3 cut(s)	224, 787, 888
MboII	GAAGA	4 cut(s)	277, 453, 456, 479
MhlI	GDGCHC	2 cut(s)	107, 605
MluCI	AATT	7 cut(s)	228, 286, 309, 621, 673, 751, 958
MmeI	TCCRAC	1 cut(s)	929
MseI	TTAA	4 cut(s)	210, 750, 801, 837
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	1 cut(s)	613
MspR9I	CCNGG	1 cut(s)	614
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	6 cut(s)	119, 128, 351, 386, 458, 662
NciI	CCSGG	1 cut(s)	614
NdeII	GATC	3 cut(s)	224, 787, 888
NlaIII	CATG	3 cut(s)	200, 366, 542
NlaIV	GGNNCC	2 cut(s)	172, 851
NmuCI	GTSAC	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PfeI	GAWTC	3 cut(s)	165, 300, 395
PflMI	CCANNNNNTGG	1 cut(s)	686
PkrI	GCNGC	7 cut(s)	7, 162, 353, 388, 516, 577, 658
PspEI	GGTNACC	1 cut(s)	899
PspFI	CCCAGC	1 cut(s)	647
PspN4I	GGNNCC	2 cut(s)	172, 851
PspPI	GGNCC	3 cut(s)	416, 547, 615
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	4 cut(s)	210, 750, 801, 837
SatI	GCNGC	7 cut(s)	6, 161, 352, 387, 515, 576, 657
Sau3AI	GATC	3 cut(s)	224, 787, 888
Sau96I	GGNCC	3 cut(s)	416, 547, 615
ScrFI	CCNGG	1 cut(s)	614
SduI	GDGCHC	2 cut(s)	107, 605
SfaNI	GCATC	3 cut(s)	439, 463, 706
SinI	GGWCC	2 cut(s)	416, 547
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	2 cut(s)	466, 905
SmoI	CTYRAG	2 cut(s)	466, 905
SpeI	ACTAGT	1 cut(s)	22
Sse9I	AATT	7 cut(s)	228, 286, 309, 621, 673, 751, 958
SsiI	CCGC	5 cut(s)	161, 184, 349, 512, 576
SspMI	CTAG	4 cut(s)	23, 593, 713, 867
StyD4I	CCNGG	1 cut(s)	612
TaaI	ACNGT	3 cut(s)	55, 742, 947
TaiI	ACGT	2 cut(s)	68, 309
TaqI	TCGA	2 cut(s)	248, 303
TasI	AATT	7 cut(s)	228, 286, 309, 621, 673, 751, 958
TauI	GCSGC	2 cut(s)	163, 578
TfiI	GAWTC	3 cut(s)	165, 300, 395
Tru1I	TTAA	4 cut(s)	210, 750, 801, 837
Tru9I	TTAA	4 cut(s)	210, 750, 801, 837
TscAI	CASTG	2 cut(s)	262, 297
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	5 cut(s)	5, 351, 386, 514, 656
Tsp45I	GTSAC	1 cut(s)	253
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	2 cut(s)	262, 297
Van91I	CCANNNNNTGG	1 cut(s)	686
VneI	GTGCAC	1 cut(s)	601
VpaK11BI	GGWCC	2 cut(s)	416, 547
XapI	RAATTY	2 cut(s)	286, 621
XmiI	GTMKAC	1 cut(s)	744
XspI	CTAG	4 cut(s)	23, 593, 713, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.