Rroxscaffold_1G00008950

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003466
Physical Location & Seq
Reverse (-)
11228996 .. 11233390
4395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00008950.1

Sequence Viewer

Length: 636 bp
ATGAAGAACGGTCGGTCGTTCCAATTGTTTACGAAGAACGGTCGGTCGTTCTGTTGTTTCGAAGAACGGTCGATCATTCCCGAAGAACTGTCAAGCGTTCCTTTCATTCCCGAAGAACGTACGATCGTTCCTATTGTTCCCGAAGAACGGTCGAGCGTTCCCCTCGTTCCTGTACATCCCGAAGAACGGTCGAGCGTTCCTGTCGTTCTGAAGAACGAGCTAGCAATTTTCCGCGAATTTTACAATAAAGTGTGCCCTCAGGCACTTCCGGCCATCAGAAGAGTTGTCAAGCAGGCAATCTATCGCAAGCCTCGCATGGGAGCTCTCTACTATTTTGCAGCCTTTGCTAAAAAAAATTGCCCATCAAGTGGTGGAGATGACAACATAGAGCCACTGGATGCAACTCCCAGGAGATTCCATACTGTGTACTTCAAGTCTCTGTTGAAAAATAAGGGTCTCCTCCATTCTGATCAAGAACTGTCCAAGGGAAATGGCAGTGCCAGTGATAAGCTGGTGCAGCATTACTGTAGTCACTCGTCTGCTTTCTTTTCGGATTCGATGATCAAGATGGGAAACATAAAGCCTCTTACTGGGACTGCTGGGGAAGTAGGACTCAATTGCAGGAAGATCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

211

Amino Acids

23.68

Weight (kDa)

9.33

Isoelectric Point (pI)

59.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 111 - 175 2e-07 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 368
AccII CGCG 1 cut(s) 234
AciI CCGC 1 cut(s) 232
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 230
AfaI GTAC 3 cut(s) 121, 174, 428
AfiI CCNNNNNNNGG 5 cut(s) 147, 186, 317, 368, 590
AgsI TTSAA 2 cut(s) 433, 445
AjnI CCWGG 1 cut(s) 407
AluBI AGCT 3 cut(s) 220, 323, 511
AluI AGCT 3 cut(s) 220, 323, 511
Alw21I GWGCWC 1 cut(s) 325
Alw26I GTCTC 2 cut(s) 441, 461
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 2 cut(s) 338, 517
ApoI RAATTY 1 cut(s) 236
AsuII TTCGAA 1 cut(s) 60
AsuNHI GCTAGC 1 cut(s) 220
AxyI CCTNAGG 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 2 cut(s) 350, 529
BccI CCATC 3 cut(s) 281, 370, 562
BciT130I CCWGG 1 cut(s) 409
BclI TGATCA 2 cut(s) 469, 561
BcoDI GTCTC 2 cut(s) 441, 461
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 526
BisI GCNGC 2 cut(s) 339, 518
BlsI GCNGC 2 cut(s) 340, 519
Bme1390I CCNGG 1 cut(s) 409
BmrFI CCNGG 1 cut(s) 409
BmrI ACTGGG 1 cut(s) 600
BmsI GCATC 1 cut(s) 388
BmtI GCTAGC 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 600
Bpu14I TTCGAA 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 461
BsaJI CCNNGG 2 cut(s) 407, 483
Bsc4I CCNNNNNNNGG 5 cut(s) 147, 186, 317, 368, 590
Bse1I ACTGG 3 cut(s) 399, 501, 595
Bse21I CCTNAGG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 409
BseDI CCNNGG 2 cut(s) 407, 483
BseGI GGATG 2 cut(s) 175, 403
BseLI CCNNNNNNNGG 5 cut(s) 147, 186, 317, 368, 590
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 3 cut(s) 399, 501, 595
BseRI GAGGAG 1 cut(s) 449
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 2 cut(s) 350, 529
BseYI CCCAGC 1 cut(s) 599
BsgI GTGCAG 1 cut(s) 536
Bsh1236I CGCG 1 cut(s) 234
Bsh1285I CGRYCG 8 cut(s) 13, 17, 43, 47, 71, 126, 152, 191
BshFI GGCC 1 cut(s) 272
BsiEI CGRYCG 8 cut(s) 13, 17, 43, 47, 71, 126, 152, 191
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 1 cut(s) 269
BsiWI CGTACG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 607
BslI CCNNNNNNNGG 5 cut(s) 147, 186, 317, 368, 590
BsmAI GTCTC 2 cut(s) 441, 461
BsmFI GGGAC 1 cut(s) 607
BsnI GGCC 1 cut(s) 272
Bso31I GGTCTC 1 cut(s) 461
Bsp119I TTCGAA 1 cut(s) 60
Bsp1286I GDGCHC 2 cut(s) 257, 325
Bsp1407I TGTACA 1 cut(s) 172
Bsp143I GATC 5 cut(s) 72, 123, 469, 561, 627
BspACI CCGC 1 cut(s) 232
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 1 cut(s) 271
BspFNI CGCG 1 cut(s) 234
BspOI GCTAGC 1 cut(s) 224
BspT104I TTCGAA 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 461
BsrGI TGTACA 1 cut(s) 172
BsrI ACTGG 3 cut(s) 399, 501, 595
BssECI CCNNGG 2 cut(s) 407, 483
BssMI GATC 5 cut(s) 72, 123, 469, 561, 627
BssT1I CCWWGG 1 cut(s) 483
Bst2UI CCWGG 1 cut(s) 409
Bst4CI ACNGT 9 cut(s) 11, 41, 69, 90, 150, 189, 424, 480, 527
Bst6I CTCTTC 1 cut(s) 274
BstAPI GCANNNNNTGC 1 cut(s) 344
BstAUI TGTACA 1 cut(s) 172
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 3 cut(s) 222, 294, 308
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 175, 403
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 5 cut(s) 75, 126, 472, 564, 630
BstMAI GTCTC 2 cut(s) 441, 461
BstMBI GATC 5 cut(s) 72, 123, 469, 561, 627
BstMCI CGRYCG 8 cut(s) 13, 17, 43, 47, 71, 126, 152, 191
BstMWI GCNNNNNNNGC 4 cut(s) 269, 312, 344, 517
BstNI CCWGG 1 cut(s) 409
BstSCI CCNGG 1 cut(s) 407
BstSFI CTRYAG 1 cut(s) 526
BstSLI GKGCMC 1 cut(s) 257
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 350, 529
Bsu36I CCTNAGG 1 cut(s) 258
BsuRI GGCC 1 cut(s) 272
BtsCI GGATG 2 cut(s) 175, 403
BtsI GCAGTG 1 cut(s) 502
BtsIMutI CAGTG 3 cut(s) 392, 502, 508
Cac8I GCNNGC 3 cut(s) 222, 294, 308
Csp6I GTAC 3 cut(s) 120, 173, 427
CviAII CATG 1 cut(s) 316
CviJI RGCY 8 cut(s) 220, 272, 310, 323, 341, 391, 511, 583
CviKI_1 RGCY 8 cut(s) 220, 272, 310, 323, 341, 391, 511, 583
CviQI GTAC 3 cut(s) 120, 173, 427
DdeI CTNAG 1 cut(s) 258
DpnI GATC 5 cut(s) 74, 125, 471, 563, 629
DpnII GATC 5 cut(s) 72, 123, 469, 561, 627
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
Ecl136II GAGCTC 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 483
Eco24I GRGCYC 1 cut(s) 325
Eco31I GGTCTC 1 cut(s) 461
Eco53kI GAGCTC 1 cut(s) 323
Eco57I CTGAAG 1 cut(s) 230
Eco81I CCTNAGG 1 cut(s) 258
EcoICRI GAGCTC 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 407
EcoT14I CCWWGG 1 cut(s) 483
EcoT38I GRGCYC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 1 cut(s) 319
FaiI YATR 4 cut(s) 317, 386, 420, 578
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FaqI GGGAC 1 cut(s) 607
FatI CATG 1 cut(s) 315
FbaI TGATCA 2 cut(s) 469, 561
Fnu4HI GCNGC 2 cut(s) 339, 518
FokI GGATG 2 cut(s) 162, 410
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 2 cut(s) 339, 518
FspBI CTAG 1 cut(s) 221
GluI GCNGC 2 cut(s) 339, 518
GsaI CCCAGC 1 cut(s) 603
HaeIII GGCC 1 cut(s) 272
HapII CCGG 1 cut(s) 269
Hin1II CATG 1 cut(s) 319
HinfI GANTC 3 cut(s) 414, 554, 612
HpaII CCGG 1 cut(s) 269
Hpy166II GTNNAC 2 cut(s) 30, 427
Hpy188I TCNGA 4 cut(s) 210, 278, 469, 553
Hpy188III TCNNGA 6 cut(s) 80, 110, 140, 179, 473, 565
Hpy8I GTNNAC 2 cut(s) 30, 427
HpyCH4III ACNGT 9 cut(s) 11, 41, 69, 90, 150, 189, 424, 480, 527
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 4 cut(s) 338, 401, 517, 621
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 312, 344, 517
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 1 cut(s) 319
Ksp22I TGATCA 2 cut(s) 469, 561
Kzo9I GATC 5 cut(s) 72, 123, 469, 561, 627
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 2 cut(s) 350, 529
LweI GCATC 1 cut(s) 388
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 530
MalI GATC 5 cut(s) 74, 125, 471, 563, 629
MboI GATC 5 cut(s) 72, 123, 469, 561, 627
MboII GAAGA 9 cut(s) 16, 46, 74, 95, 125, 155, 194, 223, 291
MfeI CAATTG 2 cut(s) 23, 616
MhlI GDGCHC 2 cut(s) 257, 325
MluCI AATT 6 cut(s) 23, 225, 236, 355, 616, 631
MlyI GAGTC 1 cut(s) 606
MnlI CCTC 5 cut(s) 173, 267, 321, 470, 594
MseI TTAA 1 cut(s) 634
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 409
MunI CAATTG 2 cut(s) 23, 616
MvaI CCWGG 1 cut(s) 409
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 4 cut(s) 269, 312, 344, 517
NdeII GATC 5 cut(s) 72, 123, 469, 561, 627
NheI GCTAGC 1 cut(s) 220
NlaIII CATG 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 530
NspV TTCGAA 1 cut(s) 60
PfeI GAWTC 2 cut(s) 414, 554
Pfl23II CGTACG 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 368
PkrI GCNGC 2 cut(s) 340, 519
Ple19I CGATCG 1 cut(s) 126
PleI GAGTC 1 cut(s) 606
PpsI GAGTC 1 cut(s) 606
Psp124BI GAGCTC 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 407
PspFI CCCAGC 1 cut(s) 599
PspGI CCWGG 1 cut(s) 407
PspLI CGTACG 1 cut(s) 119
PvuI CGATCG 1 cut(s) 126
RsaI GTAC 3 cut(s) 121, 174, 428
RsaNI GTAC 3 cut(s) 120, 173, 427
SacI GAGCTC 1 cut(s) 325
SaqAI TTAA 1 cut(s) 634
SatI GCNGC 2 cut(s) 339, 518
Sau3AI GATC 5 cut(s) 72, 123, 469, 561, 627
SchI GAGTC 1 cut(s) 606
ScrFI CCNGG 1 cut(s) 409
SduI GDGCHC 2 cut(s) 257, 325
SetI ASST 4 cut(s) 121, 222, 325, 513
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 1 cut(s) 526
SfuI TTCGAA 1 cut(s) 60
Sse9I AATT 6 cut(s) 23, 225, 236, 355, 616, 631
SsiI CCGC 1 cut(s) 232
SspMI CTAG 1 cut(s) 221
SstI GAGCTC 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 407
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 9 cut(s) 11, 41, 69, 90, 150, 189, 424, 480, 527
TaiI ACGT 1 cut(s) 121
TaqI TCGA 5 cut(s) 60, 71, 152, 191, 557
TaqII GACCGA 1 cut(s) 33
TasI AATT 6 cut(s) 23, 225, 236, 355, 616, 631
TatI WGTACW 2 cut(s) 172, 426
TfiI GAWTC 2 cut(s) 414, 554
Tru1I TTAA 1 cut(s) 634
Tru9I TTAA 1 cut(s) 634
TscAI CASTG 3 cut(s) 399, 502, 508
TseFI GTSAC 1 cut(s) 530
TseI GCWGC 2 cut(s) 338, 517
Tsp45I GTSAC 1 cut(s) 530
TspDTI ATGAA 2 cut(s) 17, 94
TspRI CASTG 3 cut(s) 399, 502, 508
Van91I CCANNNNNTGG 1 cut(s) 368
XapI RAATTY 1 cut(s) 236
XcmI CCANNNNNNNNNTGG 1 cut(s) 508
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.