Rh5DG506000

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003466
Physical Location & Seq
Reverse (-)
79110329 .. 79110589
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG506000.1

Sequence Viewer

Length: 261 bp
ATGGCACCTCTGGACTCAACTACAGCGAAATTCGACACTGTTTACTTCAAGGCTTTGCTAGAGAAAAAGGGTCTACTCCACTCTGACCAGGAGCTCTTTAAAGGCGATGGTAGTGACAGTGATAACCTGGTGCAGCATTACGCTAACAACCCGAACGACTTTGCAGTTGATTTTGGAGCTTCCATGATCAAGATGGGTAACATGAAGCCTCTCACTGGATCTGATGGTGAGATTAGACTCAACTGCAGGAAAATCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

86

Amino Acids

9.5

Weight (kDa)

5.52

Isoelectric Point (pI)

16.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 2 - 50 2.5e-07 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 73
AclWI GGATC 1 cut(s) 226
AcsI RAATTY 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 2 cut(s) 87, 126
AluBI AGCT 2 cut(s) 94, 179
AluI AGCT 2 cut(s) 94, 179
Alw21I GWGCWC 1 cut(s) 96
AlwI GGATC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 239
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 145
BccI CCATC 3 cut(s) 101, 187, 218
BciT130I CCWGG 2 cut(s) 89, 128
BclI TGATCA 1 cut(s) 186
BfaI CTAG 2 cut(s) 59, 259
BfmI CTRYAG 2 cut(s) 21, 244
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 2 cut(s) 89, 128
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 89, 128
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 220
BseBI CCWGG 2 cut(s) 89, 128
BseLI CCNNNNNNNGG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 145
BsgI GTGCAG 1 cut(s) 152
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 186, 218
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 248
BspPI GGATC 1 cut(s) 226
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 220
BssMI GATC 2 cut(s) 186, 218
Bst2UI CCWGG 2 cut(s) 89, 128
Bst4CI ACNGT 2 cut(s) 40, 119
BstKTI GATC 2 cut(s) 189, 221
BstMBI GATC 2 cut(s) 186, 218
BstNI CCWGG 2 cut(s) 89, 128
BstSCI CCNGG 2 cut(s) 87, 126
BstSFI CTRYAG 2 cut(s) 21, 244
BstV1I GCAGC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BtgZI GCGATG 1 cut(s) 120
BtsIMutI CAGTG 3 cut(s) 36, 124, 213
CsiI ACCWGGT 1 cut(s) 126
CviAII CATG 2 cut(s) 184, 202
CviJI RGCY 4 cut(s) 53, 94, 179, 208
CviKI_1 RGCY 4 cut(s) 53, 94, 179, 208
DpnI GATC 2 cut(s) 188, 220
DpnII GATC 2 cut(s) 186, 218
DraI TTTAAA 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoRII CCWGG 2 cut(s) 87, 126
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 2 cut(s) 187, 205
FaiI YATR 2 cut(s) 185, 203
FatI CATG 2 cut(s) 183, 201
FbaI TGATCA 1 cut(s) 186
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 2 cut(s) 59, 259
GluI GCNGC 1 cut(s) 134
Hin1II CATG 2 cut(s) 187, 205
HinfI GANTC 2 cut(s) 14, 237
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 2 cut(s) 43, 74
Hpy188I TCNGA 2 cut(s) 85, 223
Hpy188III TCNNGA 2 cut(s) 11, 190
Hpy8I GTNNAC 2 cut(s) 43, 74
HpyCH4III ACNGT 2 cut(s) 40, 119
HpyCH4V TGCA 3 cut(s) 133, 164, 246
Hsp92II CATG 2 cut(s) 187, 205
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 2 cut(s) 186, 218
LmnI GCTCC 2 cut(s) 91, 176
LpnPI CCDG 6 cut(s) 74, 101, 113, 140, 201, 232
Lsp1109I GCAGC 1 cut(s) 145
MabI ACCWGGT 1 cut(s) 126
MaeI CTAG 2 cut(s) 59, 259
MaeIII GTNAC 2 cut(s) 113, 197
MalI GATC 2 cut(s) 188, 220
MboI GATC 2 cut(s) 186, 218
MflI RGATCY 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 29
MlyI GAGTC 2 cut(s) 8, 231
MnlI CCTC 2 cut(s) 18, 219
MseI TTAA 1 cut(s) 99
MspR9I CCNGG 2 cut(s) 89, 128
MvaI CCWGG 2 cut(s) 89, 128
NdeII GATC 2 cut(s) 186, 218
NlaIII CATG 2 cut(s) 187, 205
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 2 cut(s) 8, 231
PpsI GAGTC 2 cut(s) 8, 231
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 2 cut(s) 87, 126
PspGI CCWGG 2 cut(s) 87, 126
PspN4I GGNNCC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 248
PsuI RGATCY 1 cut(s) 218
SacI GAGCTC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 2 cut(s) 186, 218
SchI GAGTC 2 cut(s) 8, 231
ScrFI CCNGG 2 cut(s) 89, 128
SduI GDGCHC 1 cut(s) 96
SetI ASST 4 cut(s) 10, 96, 129, 181
SexAI ACCWGGT 1 cut(s) 126
SfcI CTRYAG 2 cut(s) 21, 244
Sse9I AATT 1 cut(s) 29
SspMI CTAG 2 cut(s) 59, 259
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 2 cut(s) 87, 126
TaaI ACNGT 2 cut(s) 40, 119
TaqI TCGA 1 cut(s) 33
TasI AATT 1 cut(s) 29
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 3 cut(s) 43, 124, 220
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 218
TspRI CASTG 3 cut(s) 43, 124, 220
XapI RAATTY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 73
XspI CTAG 2 cut(s) 59, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.