Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8350947.1

Orthogroup ID

OG0003466

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 717

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8350947.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ttgggaggcccgtcctattcctatgaagtattattgggtagaagagatgcaacaactacaagcataaatgatgccaacagaaaccttcctcctccatttttcaacttccctcaactgctttccaactttcaatcccatggtttagacctacaagacctagtccttctctcggcgggccataccatcggactagctaagtgcaccaccttccgggcaaggatttacaacgaaaccaatatagaccctgactttgcagcctccctaaaacagggttgtccggcaaacggtggggacaacaacatggcacctctggactcaactacagcgaaattcgacactgtttacttcaaggctttgctagagaaaaagggtctactccactctgaccaggagctctttaaaggcgatggtagtgacagtgataacgtggtgcagcattacgctaacaacccgaacgactttgcagttgattttggagcttccatgatcaagatgggtaacatgaagcctctcactggatctgatggtgagattagactcaactgcaggaaaatcaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

186

Amino Acids

20.29

Weight (kDa)

5.49

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40120 FvH4_3g40140 FvH4_3g40150 FvH4_3g40160
malus_domestica	MD03G1059000.v1.1 MD11G1061000.v1.1 MD11G1061100.v1.1 MD11G1061200.v1.1
prunus_persica	Prupe.6G044200_v2.0.a1 Prupe.6G044500_v2.0.a1 Prupe.6G044600_v2.0.a1 Prupe.6G044700_v2.0.a1 Prupe.6G044800_v2.0.a1
pyrus_communis	pycom11g05080
rosa_chinensis	RchiOBHm_Chr5g0072301 RchiOBHm_Chr5g0072331 RchiOBHm_Chr5g0072351
rosa_laevigata	RLG00000036292 RLG00000036293
rosa_multiflora	Rmu_co8350947.1_g000001 Rmu_sc0000737.1_g000016 Rmu_sc0008937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008870 Rroxscaffold_1G00008880 Rroxscaffold_1G00008900 Rroxscaffold_1G00008940 Rroxscaffold_1G00008950 Rroxscaffold_1G00008960
rosa_samantha	Rh5AG473600 Rh5BG494100 Rh5CG517800 Rh5CG518100 Rh5DG506000 Rh5DG506200
rosa_wichuraiana	Rw5G043990 Rw5G044010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	304
AccI	GTMKAC	1 cut(s)	373
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	1 cut(s)	526
AcsI	RAATTY	1 cut(s)	329
AfiI	CCNNNNNNNGG	5 cut(s)	169, 210, 268, 284, 515
AgsI	TTSAA	3 cut(s)	103, 131, 349
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	3 cut(s)	194, 394, 479
AluI	AGCT	3 cut(s)	194, 394, 479
Alw21I	GWGCWC	2 cut(s)	203, 396
Alw44I	GTGCAC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	526
AoxI	GGCC	2 cut(s)	7, 175
ApaLI	GTGCAC	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	254, 433
ApoI	RAATTY	1 cut(s)	329
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AspS9I	GGNCC	2 cut(s)	8, 175
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	539
BaeGI	GKGCMC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	396
Bbv12I	GWGCWC	2 cut(s)	203, 396
BbvI	GCAGC	2 cut(s)	266, 445
BccI	CCATC	4 cut(s)	191, 401, 487, 518
BciT130I	CCWGG	1 cut(s)	389
BclI	TGATCA	1 cut(s)	486
BcnI	CCSGG	1 cut(s)	212
BfaI	CTAG	4 cut(s)	158, 191, 359, 559
BfmI	CTRYAG	2 cut(s)	321, 544
BisI	GCNGC	2 cut(s)	255, 434
BlsI	GCNGC	2 cut(s)	256, 435
Bme1390I	CCNGG	2 cut(s)	212, 389
BmgT120I	GGNCC	2 cut(s)	8, 175
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	2 cut(s)	212, 389
BmsI	GCATC	2 cut(s)	37, 61
BpuMI	CCSGG	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	5 cut(s)	169, 210, 268, 284, 515
Bse1I	ACTGG	1 cut(s)	520
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	1 cut(s)	136
BseLI	CCNNNNNNNGG	5 cut(s)	169, 210, 268, 284, 515
BseNI	ACTGG	1 cut(s)	520
BseRI	GAGGAG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	266, 445
BsgI	GTGCAG	1 cut(s)	452
BshFI	GGCC	2 cut(s)	9, 177
BshNI	GGYRCC	1 cut(s)	304
BsiHKAI	GWGCWC	2 cut(s)	203, 396
BsiSI	CCGG	2 cut(s)	211, 278
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	5 cut(s)	169, 210, 268, 284, 515
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	9, 177
Bsp1286I	GDGCHC	2 cut(s)	203, 396
Bsp143I	GATC	2 cut(s)	486, 518
Bsp19I	CCATGG	1 cut(s)	136
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	2 cut(s)	9, 177
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	548
BspPI	GGATC	1 cut(s)	526
BspT107I	GGYRCC	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	2 cut(s)	486, 518
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	3 cut(s)	287, 340, 419
Bst6I	CTCTTC	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	136
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstKTI	GATC	2 cut(s)	489, 521
BstMBI	GATC	2 cut(s)	486, 518
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	2 cut(s)	210, 387
BstSFI	CTRYAG	2 cut(s)	321, 544
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	266, 445
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
BsuRI	GGCC	2 cut(s)	9, 177
BtgI	CCRYGG	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	420
BtsIMutI	CAGTG	3 cut(s)	336, 424, 513
Cac8I	GCNNGC	1 cut(s)	175
Cfr13I	GGNCC	2 cut(s)	8, 175
CviAII	CATG	4 cut(s)	137, 301, 484, 502
CviJI	RGCY	8 cut(s)	9, 177, 194, 257, 353, 394, 479, 508
CviKI_1	RGCY	8 cut(s)	9, 177, 194, 257, 353, 394, 479, 508
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	488, 520
DpnII	GATC	2 cut(s)	486, 518
DraI	TTTAAA	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	394
EcoICRI	GAGCTC	1 cut(s)	394
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	4 cut(s)	140, 304, 487, 505
FaiI	YATR	8 cut(s)	24, 65, 138, 180, 239, 302, 485, 503
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	4 cut(s)	136, 300, 483, 501
FauI	CCCGC	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	2 cut(s)	255, 434
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	2 cut(s)	255, 434
FspBI	CTAG	4 cut(s)	158, 191, 359, 559
GluI	GCNGC	2 cut(s)	255, 434
HaeIII	GGCC	2 cut(s)	9, 177
HapII	CCGG	2 cut(s)	211, 278
Hin1II	CATG	4 cut(s)	140, 304, 487, 505
HinfI	GANTC	2 cut(s)	314, 537
HpaII	CCGG	2 cut(s)	211, 278
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	3 cut(s)	201, 343, 374
Hpy188I	TCNGA	3 cut(s)	188, 385, 523
Hpy188III	TCNNGA	2 cut(s)	311, 490
Hpy8I	GTNNAC	3 cut(s)	201, 343, 374
HpyAV	CCTTC	3 cut(s)	95, 173, 217
HpyCH4III	ACNGT	3 cut(s)	287, 340, 419
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	6 cut(s)	50, 201, 254, 433, 464, 546
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	4 cut(s)	140, 304, 487, 505
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	2 cut(s)	486, 518
LmnI	GCTCC	2 cut(s)	391, 476
LpnPI	CCDG	9 cut(s)	224, 254, 258, 291, 296, 374, 401, 501, 532
Lsp1109I	GCAGC	2 cut(s)	266, 445
LweI	GCATC	2 cut(s)	37, 61
MaeI	CTAG	4 cut(s)	158, 191, 359, 559
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	2 cut(s)	413, 497
MalI	GATC	2 cut(s)	488, 520
MboI	GATC	2 cut(s)	486, 518
MboII	GAAGA	1 cut(s)	54
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	2 cut(s)	203, 396
MluCI	AATT	1 cut(s)	329
MlyI	GAGTC	2 cut(s)	308, 531
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	6 cut(s)	99, 102, 120, 268, 318, 519
MseI	TTAA	1 cut(s)	399
MspI	CCGG	2 cut(s)	211, 278
MspR9I	CCNGG	2 cut(s)	212, 389
MvaI	CCWGG	1 cut(s)	389
NciI	CCSGG	1 cut(s)	212
NcoI	CCATGG	1 cut(s)	136
NdeII	GATC	2 cut(s)	486, 518
NlaIII	CATG	4 cut(s)	140, 304, 487, 505
NlaIV	GGNNCC	1 cut(s)	306
NmeAIII	GCCGAG	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	413
PflFI	GACNNNGTC	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	256, 435
PleI	GAGTC	2 cut(s)	308, 531
PpsI	GAGTC	2 cut(s)	308, 531
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	8, 175
PstI	CTGCAG	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	518
PsyI	GACNNNGTC	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	2 cut(s)	255, 434
Sau3AI	GATC	2 cut(s)	486, 518
Sau96I	GGNCC	2 cut(s)	8, 175
SchI	GAGTC	2 cut(s)	308, 531
ScrFI	CCNGG	2 cut(s)	212, 389
SduI	GDGCHC	2 cut(s)	203, 396
SetI	ASST	9 cut(s)	87, 150, 159, 196, 209, 310, 396, 429, 481
SfaNI	GCATC	2 cut(s)	37, 61
SfcI	CTRYAG	2 cut(s)	321, 544
Sse9I	AATT	1 cut(s)	329
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	4 cut(s)	158, 191, 359, 559
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	2 cut(s)	210, 387
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	3 cut(s)	287, 340, 419
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	1 cut(s)	333
TasI	AATT	1 cut(s)	329
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	3 cut(s)	343, 424, 520
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	2 cut(s)	254, 433
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	2 cut(s)	39, 518
TspRI	CASTG	3 cut(s)	343, 424, 520
Tth111I	GACNNNGTC	1 cut(s)	158
VneI	GTGCAC	1 cut(s)	199
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XmiI	GTMKAC	1 cut(s)	373
XspI	CTAG	4 cut(s)	158, 191, 359, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.