Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003466

Physical Location & Seq

Genomic Coordinates Reverse (-)

11133698 .. 11134890

Gene Structure 1193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTTCTCTTCGATCTTTCCTAGTCTGTATTATAGTTTTAGCTGCCATTGTTATAACACCATCGTCTGCACAACTAAGTGCTGGCTTCTACAACAAAGTGTGTCCTCAGGCACTTCCAGCTATCAGAAAAATTGTCCGTCAAGCTGTCAGAAATGAACCGCGAATGGGAGCTTCTCTACTGCGTTTGCACTTCCACGATTGCTTTGTTAACGGTTGCGATGGATCAGTTCTGCTAGATGACACTTCGACGTTCACTGGTGAGAAGACAGCGGCACCAAATGCCGGCTCAATCAGAGGATTCCAGGTGATTGACCAGATCAAAGCAGCTGTCGACAAAGCTTGTAAGGGTAGTGTTGTCTCATGCGCTGATATATTAGCCGTTGCAGCTCGTGATTCTGTATACCTTCTTCTATCTAACTTCCAATCTCATGGTCTTGACCTCAAAGACTTAGTACTCCTCTCAGCTGCTCACACCATTGGACTTGCTCGCTGCACTACCTTCAGAGATAGAATTTACAATGACACCAACATAAACGCCAAATTTGCAGCTTCTGCTAAACGAAACTGCCCGTCAAATGGTGGAGATAACAACTTACAGCCACTCGATGCAACCACGAAGAAATTCGACACAGTGTATTTTAGTTCCTTGTTGAAATCAAAGGGTCTCCTTCACTCTGATCAAGAGTTGTTCAAGGGCGATGGGAGTGACAGTGATAAGCTGGTGCAACACTACAGCGTGAGCCCATCTGATTTTTGGAAGGACTTTTCTGCTTCAATGATCAAGATGGGTAATATAAAGCCTCTGACTGGAAATGCTGGTCAAGTGAGACTCAACTGTAGGAAGATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

284

Amino Acids

30.69

Weight (kDa)

9.13

Isoelectric Point (pI)

29.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	42 - 136	4.9e-35	Peroxidase
peroxidase	PF00141	137 - 246	7.3e-26	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40120 FvH4_3g40140 FvH4_3g40150 FvH4_3g40160
malus_domestica	MD03G1059000.v1.1 MD11G1061000.v1.1 MD11G1061100.v1.1 MD11G1061200.v1.1
prunus_persica	Prupe.6G044200_v2.0.a1 Prupe.6G044500_v2.0.a1 Prupe.6G044600_v2.0.a1 Prupe.6G044700_v2.0.a1 Prupe.6G044800_v2.0.a1
pyrus_communis	pycom11g05080
rosa_chinensis	RchiOBHm_Chr5g0072301 RchiOBHm_Chr5g0072331 RchiOBHm_Chr5g0072351
rosa_laevigata	RLG00000036292 RLG00000036293
rosa_multiflora	Rmu_co8350947.1_g000001 Rmu_sc0000737.1_g000016 Rmu_sc0008937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008870 Rroxscaffold_1G00008880 Rroxscaffold_1G00008900 Rroxscaffold_1G00008940 Rroxscaffold_1G00008950 Rroxscaffold_1G00008960
rosa_samantha	Rh5AG473600 Rh5BG494100 Rh5CG517800 Rh5CG518100 Rh5DG506000 Rh5DG506200
rosa_wichuraiana	Rw5G043990 Rw5G044010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	56
AccB1I	GGYRCC	1 cut(s)	274
AccI	GTMKAC	2 cut(s)	333, 402
AccII	CGCG	1 cut(s)	163
AciI	CCGC	2 cut(s)	161, 272
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	3 cut(s)	513, 542, 623
AcuI	CTGAAG	1 cut(s)	487
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	4 cut(s)	167, 284, 578, 809
AgsI	TTSAA	3 cut(s)	655, 694, 777
AjnI	CCWGG	1 cut(s)	303
Alw26I	GTCTC	3 cut(s)	364, 671, 823
AlwI	GGATC	1 cut(s)	232
AlwNI	CAGNNNCTG	1 cut(s)	554
ApeKI	GCWGC	6 cut(s)	44, 326, 386, 467, 492, 548
ApoI	RAATTY	3 cut(s)	513, 542, 623
ArsI	GACNNNNNNTTYG	2 cut(s)	315, 347
Asp700I	GAANNNNTTC	1 cut(s)	623
AspLEI	GCGC	1 cut(s)	368
AsuHPI	GGTGA	2 cut(s)	272, 319
AxyI	CCTNAGG	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	746
BarI	GAAGNNNNNNTAC	2 cut(s)	393, 425
BauI	CACGAG	1 cut(s)	390
BbsI	GAAGAC	1 cut(s)	272
BbvI	GCAGC	6 cut(s)	31, 338, 398, 454, 479, 560
BccI	CCATC	5 cut(s)	70, 215, 695, 754, 781
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	305
BclI	TGATCA	2 cut(s)	679, 780
BcoDI	GTCTC	3 cut(s)	364, 671, 823
BfaI	CTAG	2 cut(s)	23, 236
BfmI	CTRYAG	2 cut(s)	733, 838
BisI	GCNGC	7 cut(s)	45, 273, 327, 387, 468, 493, 549
BlsI	GCNGC	7 cut(s)	46, 274, 328, 388, 469, 494, 550
BmcAI	AGTACT	1 cut(s)	456
Bme1390I	CCNGG	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	598
BpiI	GAAGAC	1 cut(s)	272
BsaI	GGTCTC	1 cut(s)	671
BsaXI	ACNNNNNCTCC	2 cut(s)	697, 727
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 284, 578, 809
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	2 cut(s)	262, 814
Bse21I	CCTNAGG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	305
BseLI	CCNNNNNNNGG	4 cut(s)	167, 284, 578, 809
BseMII	CTCAG	2 cut(s)	122, 477
BseNI	ACTGG	2 cut(s)	262, 814
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	6 cut(s)	31, 338, 398, 454, 479, 560
BsgI	GTGCAG	2 cut(s)	54, 478
Bsh1236I	CGCG	1 cut(s)	163
BshNI	GGYRCC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	4 cut(s)	167, 284, 578, 809
BsmAI	GTCTC	3 cut(s)	364, 671, 823
Bso31I	GGTCTC	1 cut(s)	671
Bsp1286I	GDGCHC	1 cut(s)	746
Bsp143I	GATC	6 cut(s)	14, 224, 318, 679, 780, 846
BspACI	CCGC	2 cut(s)	161, 272
BspCNI	CTCAG	2 cut(s)	121, 476
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	671
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	262, 814
BssAI	RCCGGY	1 cut(s)	284
BssMI	GATC	6 cut(s)	14, 224, 318, 679, 780, 846
BssNAI	GTATAC	1 cut(s)	403
BssSI	CACGAG	1 cut(s)	390
Bst1107I	GTATAC	1 cut(s)	403
Bst2BI	CACGAG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	4 cut(s)	215, 634, 713, 839
Bst6I	CTCTTC	1 cut(s)	15
BstAPI	GCANNNNNTGC	2 cut(s)	281, 554
BstC8I	GCNNGC	3 cut(s)	85, 286, 490
BstDEI	CTNAG	4 cut(s)	77, 108, 451, 463
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	6 cut(s)	17, 227, 321, 682, 783, 849
BstMAI	GTCTC	3 cut(s)	364, 671, 823
BstMBI	GATC	6 cut(s)	14, 224, 318, 679, 780, 846
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 281, 386, 545, 554
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	2 cut(s)	733, 838
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	6 cut(s)	31, 338, 398, 454, 479, 560
BstV2I	GAAGAC	1 cut(s)	272
BstXI	CCANNNNNNTGG	1 cut(s)	431
BstZ17I	GTATAC	1 cut(s)	403
Bsu36I	CCTNAGG	1 cut(s)	108
BtgZI	GCGATG	2 cut(s)	234, 714
BtsIMutI	CAGTG	3 cut(s)	255, 639, 718
Cac8I	GCNNGC	3 cut(s)	85, 286, 490
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	1 cut(s)	368
Cfr10I	RCCGGY	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	455
CviAII	CATG	2 cut(s)	363, 431
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	4 cut(s)	77, 108, 451, 463
DpnI	GATC	6 cut(s)	16, 226, 320, 681, 782, 848
DpnII	GATC	6 cut(s)	14, 224, 318, 679, 780, 846
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	746
Eco31I	GGTCTC	1 cut(s)	671
Eco57I	CTGAAG	1 cut(s)	487
Eco81I	CCTNAGG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	746
FaeI	CATG	2 cut(s)	366, 434
FaiI	YATR	8 cut(s)	35, 56, 364, 374, 403, 432, 533, 797
FatI	CATG	2 cut(s)	362, 430
FbaI	TGATCA	2 cut(s)	679, 780
FblI	GTMKAC	2 cut(s)	333, 402
Fnu4HI	GCNGC	7 cut(s)	45, 273, 327, 387, 468, 493, 549
FriOI	GRGCYC	1 cut(s)	746
Fsp4HI	GCNGC	7 cut(s)	45, 273, 327, 387, 468, 493, 549
FspBI	CTAG	2 cut(s)	23, 236
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	7 cut(s)	45, 273, 327, 387, 468, 493, 549
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	1 cut(s)	368
Hin1II	CATG	2 cut(s)	366, 434
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HincII	GTYRAC	2 cut(s)	211, 334
HindII	GTYRAC	2 cut(s)	211, 334
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	3 cut(s)	300, 395, 831
HpaI	GTTAAC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	272, 319
Hpy166II	GTNNAC	4 cut(s)	211, 255, 334, 403
Hpy188I	TCNGA	7 cut(s)	128, 152, 296, 506, 679, 751, 807
Hpy188III	TCNNGA	4 cut(s)	392, 437, 683, 784
Hpy8I	GTNNAC	4 cut(s)	211, 255, 334, 403
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	4 cut(s)	416, 511, 680, 754
HpyCH4III	ACNGT	4 cut(s)	215, 634, 713, 839
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	7 cut(s)	71, 190, 386, 495, 548, 611, 727
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 281, 386, 545, 554
HpyF3I	CTNAG	4 cut(s)	77, 108, 451, 463
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	366, 434
HspAI	GCGC	1 cut(s)	366
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Ksp22I	TGATCA	2 cut(s)	679, 780
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	6 cut(s)	14, 224, 318, 679, 780, 846
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	6 cut(s)	31, 338, 398, 454, 479, 560
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	2 cut(s)	23, 236
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	707
MalI	GATC	6 cut(s)	16, 226, 320, 681, 782, 848
MboI	GATC	6 cut(s)	14, 224, 318, 679, 780, 846
MboII	GAAGA	3 cut(s)	277, 401, 631
MfeI	CAATTG	1 cut(s)	850
MhlI	GDGCHC	1 cut(s)	746
MluCI	AATT	5 cut(s)	132, 513, 542, 623, 850
MlyI	GAGTC	1 cut(s)	825
MnlI	CCTC	5 cut(s)	117, 290, 452, 470, 813
MroNI	GCCGGC	1 cut(s)	284
MroXI	GAANNNNTTC	1 cut(s)	623
MseI	TTAA	1 cut(s)	210
MspA1I	CMGCKG	3 cut(s)	272, 329, 467
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	305
MunI	CAATTG	1 cut(s)	850
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	5 cut(s)	119, 281, 386, 545, 554
NaeI	GCCGGC	1 cut(s)	286
NdeII	GATC	6 cut(s)	14, 224, 318, 679, 780, 846
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	2 cut(s)	366, 434
NlaIV	GGNNCC	1 cut(s)	276
NmuCI	GTSAC	1 cut(s)	707
PdiI	GCCGGC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	623
PfeI	GAWTC	2 cut(s)	300, 395
PkrI	GCNGC	7 cut(s)	46, 274, 328, 388, 469, 494, 550
PleI	GAGTC	1 cut(s)	825
PpsI	GAGTC	1 cut(s)	825
PsiI	TTATAA	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	276
PstNI	CAGNNNCTG	1 cut(s)	554
PvuII	CAGCTG	2 cut(s)	329, 467
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
SalI	GTCGAC	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	7 cut(s)	45, 273, 327, 387, 468, 493, 549
Sau3AI	GATC	6 cut(s)	14, 224, 318, 679, 780, 846
ScaI	AGTACT	1 cut(s)	456
SchI	GAGTC	1 cut(s)	825
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	746
SfaNI	GCATC	1 cut(s)	598
SfcI	CTRYAG	2 cut(s)	733, 838
Sse9I	AATT	5 cut(s)	132, 513, 542, 623, 850
SsiI	CCGC	2 cut(s)	161, 272
SspMI	CTAG	2 cut(s)	23, 236
StyD4I	CCNGG	1 cut(s)	303
TaaI	ACNGT	4 cut(s)	215, 634, 713, 839
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	5 cut(s)	13, 248, 333, 606, 627
TasI	AATT	5 cut(s)	132, 513, 542, 623, 850
TatI	WGTACW	1 cut(s)	454
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	2 cut(s)	300, 395
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	3 cut(s)	262, 639, 718
TseFI	GTSAC	1 cut(s)	707
TseI	GCWGC	6 cut(s)	44, 326, 386, 467, 492, 548
Tsp45I	GTSAC	1 cut(s)	707
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	3 cut(s)	262, 639, 718
XapI	RAATTY	3 cut(s)	513, 542, 623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	753
XmiI	GTMKAC	2 cut(s)	333, 402
XmnI	GAANNNNTTC	1 cut(s)	623
XspI	CTAG	2 cut(s)	23, 236
ZrmI	AGTACT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.