FvH4_3g41850

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002116
Physical Location & Seq
Reverse (-)
35051694 .. 35056580
4887 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41850.t3

Sequence Viewer

Length: 1386 bp
ATGGTAGATCAAAACCCTCTTGAAGTAGCCAATAGTGCATCATGTGGTGACCATGGCAACCCTCTAATAAGAACCGGAACCTTATGGAGTTGTGTGGCTCATATCATTACTGCTGTTCTTGGATCTGGCGTTCTGTCTTTGGCATGGAGTATTGCACAGCTTGGATGGATTGGAGGCCCTATTTCAATGCTTTGTATAGCAATCATCACCTACATTTCTTCATACCTCCTTTCAGATTGTTACAGGTCTACTGACCCTGTAACAGGAACTCGAAACCACTCTTACATGGAGGCTGTGAGAGTGAATCTCAAAAGTAGAAAACAGTCCTGGTTGTGTGGTTTCCTTCTATATTTCATCATGTATGGAATTGGTATTGCTTATGTGATGACTACTGCAATTAGTTTGAGAGCGATTCAGAAGTCAAACTGTTATCACACGGAAGGGCATCAGGCTTCATGTACATATGGAGATACTTTGTATATGCTGATATTTGGAGCAGTCCAGATTGTTGTGTCACAAATACCAGATTTCCATAACATGCAATGGCTTTCGGTTATTGCAGCAATCATGTCTTTTGCCTACTCTTTTATTGGACTTGGCCTTGGATTAGCCAAAGTAATAGAAAATGGGAGTATTAAAGGGACCTTGTCAGGAGTTGCAACCACTACTGTTGCTGCTAAATTATGGTTAGCCTTCCAAGCACTTGGGGACATTGCTTTTGCCTATCCATACTCTATCATTCTTCTTGAGATTCAGGATACGTTAAAGTCCTCTCCACCGGAAAATTATATGATGAAGAAGGCCTCGTTGATTGCCATCTTAGTCACAACCTTCTTCTACCTCTGCTGTGGTTGCTTTGGATATGCAGCCTTTGGGGATGACACACCAGGGAATCTATTGACCGGATTTGGATTTTATGAGCCTTACTGGCTCATTGATTTCGCCAATGCTTGCATTGTTCTTCATTTGGTGGGAGGATATCAGGTCTATAGTCAGCCAGTATTTGCAGTTGCTGAAAGATGGTTTAGCAAGAAGTATCCAAACAGTGCATTTGTGAACAACTTTTACAGCTTCAAAATCCCAATGTTTCCGAGATTTCAAGTGAATCCATTCAGGCTATGTTTCCGGACTGTTTATGTCATTTCAACTACAGGAATTGCAATGCTCTTTCCTTATTTCAACCAAGTTTTGGGAGTGTTAGGCGCCTTGAACTTTTGGCCTTTGGCTATATATTTTCCAGTAGAGATGTACTTTGTACAAAAGAAAATTGGGACATGGACCAAGAAATGGATAGCATTACAGGCATTCAGTTTTGTTTGCTTTCTTGTGACGGTTGTGGGTGTTATTGGATCAATTGAAGGACTTATAAGTGCCAAACTTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

462

Amino Acids

51.01

Weight (kDa)

8.57

Isoelectric Point (pI)

29.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 25 - 456 1.2e-98 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1367
AccB1I GGYRCC 1 cut(s) 1202
AccB7I CCANNNNNTGG 2 cut(s) 1189, 1287
AccI GTMKAC 1 cut(s) 248
AccIII TCCGGA 1 cut(s) 1125
AclWI GGATC 2 cut(s) 130, 1357
AcyI GRCGYC 1 cut(s) 1203
AfaI GTAC 3 cut(s) 460, 1250, 1257
AfiI CCNNNNNNNGG 3 cut(s) 263, 1189, 1287
AgsI TTSAA 8 cut(s) 23, 186, 1075, 1100, 1146, 1180, 1210, 1358
AjnI CCWGG 2 cut(s) 326, 886
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 3 cut(s) 160, 1071, 1383
AluI AGCT 3 cut(s) 160, 1071, 1383
AlwI GGATC 2 cut(s) 130, 1357
AlwNI CAGNNNCTG 1 cut(s) 1013
Aor13HI TCCGGA 1 cut(s) 1125
AoxI GGCC 4 cut(s) 175, 598, 801, 1217
ApeKI GCWGC 3 cut(s) 560, 674, 866
ArsI GACNNNNNNTTYG 2 cut(s) 701, 733
Asp700I GAANNNNTTC 1 cut(s) 1109
AspLEI GCGC 1 cut(s) 1205
AspS9I GGNCC 3 cut(s) 176, 642, 1278
AsuHPI GGTGA 2 cut(s) 59, 199
AvaII GGWCC 2 cut(s) 642, 1278
BanI GGYRCC 1 cut(s) 1202
BbvI GCAGC 3 cut(s) 572, 661, 878
BccI CCATC 3 cut(s) 159, 824, 1014
BciT130I CCWGG 2 cut(s) 328, 888
BciVI GTATCC 2 cut(s) 751, 1047
BfaI CTAG 1 cut(s) 1384
BfmI CTRYAG 2 cut(s) 988, 1149
BfoI RGCGCY 1 cut(s) 1206
BfuI GTATCC 2 cut(s) 751, 1047
BglI GCCNNNNNGGC 1 cut(s) 928
BisI GCNGC 3 cut(s) 561, 675, 867
BlsI GCNGC 3 cut(s) 562, 676, 868
Bme1390I CCNGG 2 cut(s) 328, 888
Bme18I GGWCC 2 cut(s) 642, 1278
BmgT120I GGNCC 3 cut(s) 176, 642, 1278
BmiI GGNNCC 3 cut(s) 79, 643, 1204
BmrFI CCNGG 2 cut(s) 328, 888
BmsI GCATC 2 cut(s) 47, 454
BplI GAGNNNNNCTC 2 cut(s) 291, 323
BpuEI CTTGAG 1 cut(s) 767
BsaBI GATNNNNATC 1 cut(s) 815
BsaHI GRCGYC 1 cut(s) 1203
BsaJI CCNNGG 3 cut(s) 52, 601, 887
BsaWI WCCGGW 4 cut(s) 74, 778, 902, 1125
Bsc4I CCNNNNNNNGG 3 cut(s) 263, 1189, 1287
Bse1I ACTGG 3 cut(s) 932, 998, 1238
Bse3DI GCAATG 3 cut(s) 548, 711, 1167
Bse8I GATNNNNATC 1 cut(s) 815
BseAI TCCGGA 1 cut(s) 1125
BseBI CCWGG 2 cut(s) 328, 888
BseDI CCNNGG 3 cut(s) 52, 601, 887
BseGI GGATG 2 cut(s) 170, 883
BseJI GATNNNNATC 1 cut(s) 815
BseLI CCNNNNNNNGG 3 cut(s) 263, 1189, 1287
BseMI GCAATG 3 cut(s) 548, 711, 1167
BseNI ACTGG 3 cut(s) 932, 998, 1238
BseXI GCAGC 3 cut(s) 572, 661, 878
BshFI GGCC 4 cut(s) 177, 600, 803, 1219
BshNI GGYRCC 1 cut(s) 1202
BsiSI CCGG 4 cut(s) 75, 779, 903, 1126
BslFI GGGAC 3 cut(s) 655, 722, 1285
BslI CCNNNNNNNGG 3 cut(s) 263, 1189, 1287
BsmFI GGGAC 3 cut(s) 655, 722, 1285
BsmI GAATGC 1 cut(s) 1304
BsnI GGCC 4 cut(s) 177, 600, 803, 1219
Bsp13I TCCGGA 1 cut(s) 1125
Bsp1407I TGTACA 2 cut(s) 458, 1255
Bsp143I GATC 3 cut(s) 7, 122, 1349
Bsp19I CCATGG 1 cut(s) 52
BspANI GGCC 4 cut(s) 177, 600, 803, 1219
BspEI TCCGGA 1 cut(s) 1125
BspLI GGNNCC 3 cut(s) 79, 643, 1204
BspPI GGATC 2 cut(s) 130, 1357
BspT107I GGYRCC 1 cut(s) 1202
BsrDI GCAATG 3 cut(s) 548, 711, 1167
BsrGI TGTACA 2 cut(s) 458, 1255
BsrI ACTGG 3 cut(s) 932, 998, 1238
BssECI CCNNGG 3 cut(s) 52, 601, 887
BssMI GATC 3 cut(s) 7, 122, 1349
BssNI GRCGYC 1 cut(s) 1203
BssT1I CCWWGG 2 cut(s) 52, 601
Bst2UI CCWGG 2 cut(s) 328, 888
Bst4CI ACNGT 6 cut(s) 324, 428, 670, 1046, 1132, 1333
BstACI GRCGYC 1 cut(s) 1203
BstAUI TGTACA 2 cut(s) 458, 1255
BstC8I GCNNGC 1 cut(s) 952
BstDEI CTNAG 2 cut(s) 820, 1379
BstDSI CCRYGG 1 cut(s) 52
BstEII GGTNACC 1 cut(s) 47
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 2 cut(s) 170, 883
BstH2I RGCGCY 1 cut(s) 1206
BstHHI GCGC 1 cut(s) 1205
BstKTI GATC 3 cut(s) 10, 125, 1352
BstMBI GATC 3 cut(s) 7, 122, 1349
BstMWI GCNNNNNNNGC 5 cut(s) 35, 698, 852, 928, 1301
BstNI CCWGG 2 cut(s) 328, 888
BstNSI RCATGY 1 cut(s) 541
BstPI GGTNACC 1 cut(s) 47
BstSCI CCNGG 2 cut(s) 326, 886
BstSFI CTRYAG 2 cut(s) 988, 1149
BstV1I GCAGC 3 cut(s) 572, 661, 878
BstX2I RGATCY 1 cut(s) 122
BstXI CCANNNNNNTGG 1 cut(s) 704
BstYI RGATCY 1 cut(s) 122
BsuI GTATCC 2 cut(s) 751, 1047
BsuRI GGCC 4 cut(s) 177, 600, 803, 1219
BtgI CCRYGG 1 cut(s) 52
BtsCI GGATG 2 cut(s) 170, 883
BtsIMutI CAGTG 1 cut(s) 1051
Cac8I GCNNGC 1 cut(s) 952
CaiI CAGNNNCTG 1 cut(s) 1013
CfoI GCGC 1 cut(s) 1205
Cfr13I GGNCC 3 cut(s) 176, 642, 1278
Csp6I GTAC 3 cut(s) 459, 1249, 1256
CspCI CAANNNNNGTGG 2 cut(s) 652, 687
CviAII CATG 9 cut(s) 42, 53, 144, 286, 358, 456, 538, 568, 1275
CviQI GTAC 3 cut(s) 459, 1249, 1256
DdeI CTNAG 2 cut(s) 820, 1379
DinI GGCGCC 1 cut(s) 1204
DpnI GATC 3 cut(s) 9, 124, 1351
DpnII GATC 3 cut(s) 7, 122, 1349
Eco130I CCWWGG 2 cut(s) 52, 601
Eco147I AGGCCT 1 cut(s) 803
Eco32I GATATC 1 cut(s) 980
Eco47I GGWCC 2 cut(s) 642, 1278
Eco91I GGTNACC 1 cut(s) 47
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoO109I RGGNCCY 2 cut(s) 176, 642
EcoO65I GGTNACC 1 cut(s) 47
EcoRII CCWGG 2 cut(s) 326, 886
EcoRV GATATC 1 cut(s) 980
EcoT14I CCWWGG 2 cut(s) 52, 601
EgeI GGCGCC 1 cut(s) 1204
EheI GGCGCC 1 cut(s) 1204
ErhI CCWWGG 2 cut(s) 52, 601
FaeI CATG 9 cut(s) 45, 56, 147, 289, 361, 459, 541, 571, 1278
FaqI GGGAC 3 cut(s) 655, 722, 1285
FatI CATG 9 cut(s) 41, 52, 143, 285, 357, 455, 537, 567, 1274
FauNDI CATATG 1 cut(s) 463
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 3 cut(s) 561, 675, 867
FokI GGATG 2 cut(s) 177, 890
Fsp4HI GCNGC 3 cut(s) 561, 675, 867
FspBI CTAG 1 cut(s) 1384
GlaI GCGC 1 cut(s) 1204
GluI GCNGC 3 cut(s) 561, 675, 867
HaeII RGCGCY 1 cut(s) 1206
HaeIII GGCC 4 cut(s) 177, 600, 803, 1219
HapII CCGG 4 cut(s) 75, 779, 903, 1126
HhaI GCGC 1 cut(s) 1205
Hin1I GRCGYC 1 cut(s) 1203
Hin1II CATG 9 cut(s) 45, 56, 147, 289, 361, 459, 541, 571, 1278
Hin6I GCGC 1 cut(s) 1203
HinP1I GCGC 1 cut(s) 1203
HinfI GANTC 5 cut(s) 304, 412, 751, 892, 1105
HpaII CCGG 4 cut(s) 75, 779, 903, 1126
HphI GGTGA 2 cut(s) 59, 199
Hpy166II GTNNAC 2 cut(s) 249, 1057
Hpy188I TCNGA 3 cut(s) 235, 417, 1092
Hpy188III TCNNGA 6 cut(s) 20, 502, 651, 746, 755, 1126
Hpy8I GTNNAC 2 cut(s) 249, 1057
HpyAV CCTTC 6 cut(s) 353, 434, 703, 793, 841, 1352
HpyCH4III ACNGT 6 cut(s) 324, 428, 670, 1046, 1132, 1333
HpyCH4IV ACGT 1 cut(s) 761
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 698, 852, 928, 1301
HpyF3I CTNAG 2 cut(s) 820, 1379
HpySE526I ACGT 1 cut(s) 761
Hsp92I GRCGYC 1 cut(s) 1203
Hsp92II CATG 9 cut(s) 45, 56, 147, 289, 361, 459, 541, 571, 1278
HspAI GCGC 1 cut(s) 1203
KasI GGCGCC 1 cut(s) 1202
Kpn2I TCCGGA 1 cut(s) 1125
Kzo9I GATC 3 cut(s) 7, 122, 1349
LmnI GCTCC 1 cut(s) 494
Lsp1109I GCAGC 3 cut(s) 572, 661, 878
LweI GCATC 2 cut(s) 47, 454
MaeI CTAG 1 cut(s) 1384
MaeII ACGT 1 cut(s) 761
MaeIII GTNAC 6 cut(s) 47, 239, 259, 513, 823, 1327
MalI GATC 3 cut(s) 9, 124, 1351
MboI GATC 3 cut(s) 7, 122, 1349
MboII GAAGA 5 cut(s) 210, 734, 808, 826, 953
MfeI CAATTG 1 cut(s) 1353
MflI RGATCY 1 cut(s) 122
MluCI AATT 7 cut(s) 366, 396, 680, 784, 1155, 1266, 1353
Mly113I GGCGCC 1 cut(s) 1203
MnlI CCTC 9 cut(s) 27, 72, 167, 236, 283, 781, 814, 851, 968
MroI TCCGGA 1 cut(s) 1125
MroXI GAANNNNTTC 1 cut(s) 1109
MseI TTAA 2 cut(s) 636, 764
MspI CCGG 4 cut(s) 75, 779, 903, 1126
MspR9I CCNGG 2 cut(s) 328, 888
MunI CAATTG 1 cut(s) 1353
Mva1269I GAATGC 1 cut(s) 1304
MvaI CCWGG 2 cut(s) 328, 888
MwoI GCNNNNNNNGC 5 cut(s) 35, 698, 852, 928, 1301
NarI GGCGCC 1 cut(s) 1203
NcoI CCATGG 1 cut(s) 52
NdeI CATATG 1 cut(s) 463
NdeII GATC 3 cut(s) 7, 122, 1349
NlaIII CATG 9 cut(s) 45, 56, 147, 289, 361, 459, 541, 571, 1278
NlaIV GGNNCC 3 cut(s) 79, 643, 1204
NmuCI GTSAC 4 cut(s) 47, 513, 823, 1327
NspI RCATGY 1 cut(s) 541
PceI AGGCCT 1 cut(s) 803
PctI GAATGC 1 cut(s) 1304
PdmI GAANNNNTTC 1 cut(s) 1109
PfeI GAWTC 5 cut(s) 304, 412, 751, 892, 1105
PflFI GACNNNGTC 1 cut(s) 646
PflMI CCANNNNNTGG 2 cut(s) 1189, 1287
PkrI GCNGC 3 cut(s) 562, 676, 868
PluTI GGCGCC 1 cut(s) 1206
PpuMI RGGWCCY 1 cut(s) 642
PsiI TTATAA 1 cut(s) 1367
Psp5II RGGWCCY 1 cut(s) 642
Psp6I CCWGG 2 cut(s) 326, 886
PspEI GGTNACC 1 cut(s) 47
PspGI CCWGG 2 cut(s) 326, 886
PspN4I GGNNCC 3 cut(s) 79, 643, 1204
PspPI GGNCC 3 cut(s) 176, 642, 1278
PspPPI RGGWCCY 1 cut(s) 642
PsrI GAACNNNNNNTAC 2 cut(s) 1049, 1081
PstNI CAGNNNCTG 1 cut(s) 1013
PsuI RGATCY 1 cut(s) 122
PsyI GACNNNGTC 1 cut(s) 646
RsaI GTAC 3 cut(s) 460, 1250, 1257
RsaNI GTAC 3 cut(s) 459, 1249, 1256
SaqAI TTAA 2 cut(s) 636, 764
SatI GCNGC 3 cut(s) 561, 675, 867
Sau3AI GATC 3 cut(s) 7, 122, 1349
Sau96I GGNCC 3 cut(s) 176, 642, 1278
ScrFI CCNGG 2 cut(s) 328, 888
SfaNI GCATC 2 cut(s) 47, 454
SfcI CTRYAG 2 cut(s) 988, 1149
SfoI GGCGCC 1 cut(s) 1204
SinI GGWCC 2 cut(s) 642, 1278
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
Sse9I AATT 7 cut(s) 366, 396, 680, 784, 1155, 1266, 1353
SseBI AGGCCT 1 cut(s) 803
SspDI GGCGCC 1 cut(s) 1202
SspMI CTAG 1 cut(s) 1384
StuI AGGCCT 1 cut(s) 803
StyD4I CCNGG 2 cut(s) 326, 886
StyI CCWWGG 2 cut(s) 52, 601
TaaI ACNGT 6 cut(s) 324, 428, 670, 1046, 1132, 1333
TaiI ACGT 1 cut(s) 764
TaqI TCGA 1 cut(s) 271
TasI AATT 7 cut(s) 366, 396, 680, 784, 1155, 1266, 1353
TatI WGTACW 3 cut(s) 458, 1248, 1255
TfiI GAWTC 5 cut(s) 304, 412, 751, 892, 1105
Tru1I TTAA 2 cut(s) 636, 764
Tru9I TTAA 2 cut(s) 636, 764
TscAI CASTG 1 cut(s) 1051
TseFI GTSAC 4 cut(s) 47, 513, 823, 1327
TseI GCWGC 3 cut(s) 560, 674, 866
Tsp45I GTSAC 4 cut(s) 47, 513, 823, 1327
TspDTI ATGAA 5 cut(s) 210, 343, 444, 809, 953
TspGWI ACGGA 1 cut(s) 452
TspRI CASTG 1 cut(s) 1051
Tth111I GACNNNGTC 1 cut(s) 646
Van91I CCANNNNNTGG 2 cut(s) 1189, 1287
VpaK11BI GGWCC 2 cut(s) 642, 1278
XagI CCTNNNNNAGG 1 cut(s) 261
XceI RCATGY 1 cut(s) 541
XmiI GTMKAC 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 1109
XspI CTAG 1 cut(s) 1384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.