Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002116

Physical Location & Seq

Genomic Coordinates Reverse (-)

60443698 .. 60443931

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0435700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCCTTGGAATCCCCTACGGCCTCTGCATCACTTCCTACATCAGTTGAATCATCGGCTCCTCGGTGGAAGTATGAGGTGTTTTTGAGTTTCATGGGTAAAGACACTCGGCGGGGTTTTACCTCTTATTTATACAATGAATTGCAAAACAGAGAAATCAAGACATTCATCATGGATATCGACGAAACTAGTTTGAATGGCTCTGAGATCGTACTTGGATTTCTTACTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0015711 GO:0015849 GO:0016020 GO:0034220 GO:0044464 GO:0046942 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

77

Amino Acids

8.74

Weight (kDa)

4.73

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	24 - 61	4.6e-08	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23810 AT5G23810 AT5G23810 AT5G23810 AT5G23810
fragaria_vesca	FvH4_3g41850 FvH4_3g41850 FvH4_3g41850
malus_domestica	MD03G1040400.v1.1 MD11G1041800.v1.1
prunus_persica	Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1
pyrus_communis	pycom03g03110 pycom03g03120 pycom08g18190 pycom11g03550 pycom11g03570 pycom11g03580
rosa_chinensis	RchiOBHm_Chr5g0075041 RchiOBHm_Chr5g0075051
rosa_laevigata	RLG00000036520 RLG00000036521
rosa_multiflora	Rmu_co8358743.1_g000001 Rmu_sc0006984.1_g000004 Rmu_sc0006984.1_g000012
rosa_roxburghii	Rroxscaffold_1G00006590 Rroxscaffold_1G00006610
rosa_rugosa	Rorug05G0435700
rosa_samantha	Rh5AG493000 Rh5AG493100 Rh5BG514300 Rh5BG514600 Rh5CG537900 Rh5CG538200 Rh5DG526600 Rh5DG526700 Rh5DG526900
rosa_wichuraiana	Rw5G045700 Rw5G045730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	112
AfaI	GTAC	1 cut(s)	213
AgsI	TTSAA	2 cut(s)	50, 196
AhlI	ACTAGT	1 cut(s)	188
AoxI	GGCC	2 cut(s)	3, 21
BceAI	ACGGC	1 cut(s)	36
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	60
BmsI	GCATC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	6, 62
BseDI	CCNNGG	2 cut(s)	6, 62
BseMII	CTCAG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	5, 23
BsnI	GGCC	2 cut(s)	5, 23
Bsp143I	GATC	1 cut(s)	207
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	2 cut(s)	5, 23
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	60
BssECI	CCNNGG	2 cut(s)	6, 62
BssMI	GATC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	204
BstKTI	GATC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	5, 23
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	2 cut(s)	94, 172
CviJI	RGCY	4 cut(s)	5, 23, 59, 201
CviKI_1	RGCY	4 cut(s)	5, 23, 59, 201
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	6
Eco32I	GATATC	1 cut(s)	178
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	97, 175
FaiI	YATR	4 cut(s)	75, 95, 133, 173
FatI	CATG	2 cut(s)	93, 171
FauI	CCCGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	5, 23
Hin1II	CATG	2 cut(s)	97, 175
HinfI	GANTC	2 cut(s)	11, 50
Hpy188I	TCNGA	2 cut(s)	205, 233
Hpy188III	TCNNGA	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	29, 145
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	97, 175
Kzo9I	GATC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	64
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	1 cut(s)	189
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MluCI	AATT	1 cut(s)	140
MnlI	CCTC	4 cut(s)	34, 70, 72, 133
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	2 cut(s)	97, 175
NlaIV	GGNNCC	1 cut(s)	60
NmeAIII	GCCGAG	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	11, 50
PspN4I	GGNNCC	1 cut(s)	60
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
Sau3AI	GATC	1 cut(s)	207
SetI	ASST	2 cut(s)	81, 125
SfaNI	GCATC	1 cut(s)	38
SgeI	CNNG	9 cut(s)	19, 75, 106, 120, 125, 172, 184, 201, 227
SpeI	ACTAGT	1 cut(s)	188
Sse9I	AATT	1 cut(s)	140
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	6
TaqI	TCGA	1 cut(s)	180
TasI	AATT	1 cut(s)	140
TfiI	GAWTC	2 cut(s)	11, 50
TspDTI	ATGAA	3 cut(s)	82, 153, 157
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.