Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002116

Physical Location & Seq

Genomic Coordinates Forward (+)

2462678 .. 2465155

Gene Structure 2478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g03120.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGCAGTCCAACACCCTCTTGAGTTAGCTAATACTGGTTCCTGTGATGATGATGGCCATCCACTACGAACTGGAACTCTATGGAGTTGTGTGGCTCATATCATCACTGCTGTGATTGGATCTGGAGTTCTGTCTTTGGCATGGAGTACTGCACAGCTAGGCTGGATTGGAGGGCCAGTTTGTTTGCTTAGTTTTGCGATTGTCACCTACATTTCTTCCTTCCTCCTTTCGGATTGTTACCGGTCTCCTGATCCTATCACCGGAACTCGAAACAAATCTTACATGAATGCTGTGAAAGTGAATCTCAATAGTATAAAAAAGACCTGGTTTTGTGGTTTCCTTCTATATTTCAGCATGTTTGGAACTGGTATTGCTTATGTGATTACCACTGCAACCAGTATGAGAGCCATTCAGAGATCAAACTGCTATCACAAAGAAGGGCATGAAGCTTCCTGTCAATATGGGACTGGTTTGTACATGATGCTATTTGGACTTGTCCAGATTGTAGTGTCACAAATACCAGATTTCCACAACATGAAATGGCTATCAGTTGTTGCAGCAATCATGTCGTTTGCCTACTCTTTCATTGGACTTGGCCTCGGCATTGCGAAATCAATAGAAAATGGGAGGATTCAAGGAAGCCTGGCAGGAGTGCCAACCTCTAATGTTGCTGATAAATTATGGTTAGTCTTCCAAGCACTTGGAGACATCGCTTTTGCCTATCCGTACTCTATTATTCTTCTTGAAATTCAGACAATGAAGAAGGCCTCAATGATTGCCATATTTGTCACAACCTTCTTCTACCTCTGCTGTGGATGCTTTGGATACGCCGCCTTTGGGAATGACACGCCCGGGAACCTCTTGACAGGATTCGGATTCTACGAACCCTACTGGCTCATTGATTTTGCTAATGCTTGCATTGTTCTTCATTTGGTGGGAGGATATCAGGTCTACAGTCAACCAGTATTTGCAGTTGCTGAGAGATGGTCTAGGAAGAAATACCCAAACAGCGGATTTGTGAACAACTTTTACTCCATCAAAATCCCATTGTTGCCAAGATTTCAAGTGAATCCCTTCAGGCTGTGTTTCCGAACTGTTTACGTTGTGTCAACTACCGCAATTGCAATGATATTTCCTTACTTCAACCAGGTTTTGGGAGTTTTAGGGGCCTTGAACTTTTGGCCTTTGGCTATATATTTCCCTGTTGAAATGTACTTTGTACAAAAGAAAATCGGGGCTTGGACAAAAAAATGGATTGTTCTAAGGACATTTAGTTTAGTTTGCTTTCTTGTGACGGTTGTGGGTGTGATTGGATCAGTTGAAGGACTTATTAGTGCCAAACTTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

450

Amino Acids

49.69

Weight (kDa)

8.99

Isoelectric Point (pI)

27.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23810 AT5G23810 AT5G23810 AT5G23810 AT5G23810
fragaria_vesca	FvH4_3g41850 FvH4_3g41850 FvH4_3g41850
malus_domestica	MD03G1040400.v1.1 MD11G1041800.v1.1
prunus_persica	Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1
pyrus_communis	pycom03g03110 pycom03g03120 pycom08g18190 pycom11g03550 pycom11g03570 pycom11g03580
rosa_chinensis	RchiOBHm_Chr5g0075041 RchiOBHm_Chr5g0075051
rosa_laevigata	RLG00000036520 RLG00000036521
rosa_multiflora	Rmu_co8358743.1_g000001 Rmu_sc0006984.1_g000004 Rmu_sc0006984.1_g000012
rosa_roxburghii	Rroxscaffold_1G00006590 Rroxscaffold_1G00006610
rosa_rugosa	Rorug05G0435700
rosa_samantha	Rh5AG493000 Rh5AG493100 Rh5BG514300 Rh5BG514600 Rh5CG537900 Rh5CG538200 Rh5DG526600 Rh5DG526700 Rh5DG526900
rosa_wichuraiana	Rw5G045700 Rw5G045730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1153
AccI	GTMKAC	1 cut(s)	951
AciI	CCGC	3 cut(s)	831, 1011, 1116
AclWI	GGATC	3 cut(s)	127, 245, 1321
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	747
AcuI	CTGAAG	1 cut(s)	1060
AfaI	GTAC	5 cut(s)	148, 476, 728, 1214, 1221
AfiI	CCNNNNNNNGG	5 cut(s)	229, 260, 837, 1010, 1153
AgeI	ACCGGT	1 cut(s)	240
AgsI	TTSAA	7 cut(s)	635, 746, 1064, 1144, 1174, 1208, 1322
AjnI	CCWGG	3 cut(s)	323, 642, 1146
AleI	CACNNNNGTG	1 cut(s)	110
AloI	GAACNNNNNNTCC	2 cut(s)	111, 143
AluBI	AGCT	4 cut(s)	29, 157, 449, 1347
AluI	AGCT	4 cut(s)	29, 157, 449, 1347
Alw26I	GTCTC	2 cut(s)	249, 699
AlwI	GGATC	3 cut(s)	127, 245, 1321
AlwNI	CAGNNNCTG	1 cut(s)	977
Ama87I	CYCGRG	1 cut(s)	851
AoxI	GGCC	6 cut(s)	55, 173, 595, 765, 1167, 1181
ApeKI	GCWGC	1 cut(s)	557
ApoI	RAATTY	1 cut(s)	747
ArsI	GACNNNNNNTTYG	2 cut(s)	698, 730
AsiGI	ACCGGT	1 cut(s)	240
Asp700I	GAANNNNTTC	1 cut(s)	1073
AspS9I	GGNCC	2 cut(s)	173, 1167
AsuC2I	CCSGG	2 cut(s)	852, 853
AsuHPI	GGTGA	2 cut(s)	196, 250
AvaI	CYCGRG	1 cut(s)	851
BalI	TGGCCA	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	682
BbvI	GCAGC	1 cut(s)	569
BccI	CCATC	4 cut(s)	47, 66, 978, 1043
BcgI	CGANNNNNNTGC	2 cut(s)	549, 583
BciT130I	CCWGG	3 cut(s)	325, 644, 1148
BciVI	GTATCC	1 cut(s)	818
BcnI	CCSGG	2 cut(s)	852, 853
BcoDI	GTCTC	2 cut(s)	249, 699
BfaI	CTAG	3 cut(s)	158, 990, 1348
BfmI	CTRYAG	1 cut(s)	952
BfuI	GTATCC	1 cut(s)	818
BisI	GCNGC	2 cut(s)	558, 831
BlsI	GCNGC	2 cut(s)	559, 832
BmcAI	AGTACT	1 cut(s)	148
Bme1390I	CCNGG	5 cut(s)	325, 644, 852, 853, 1148
BmeT110I	CYCGRG	1 cut(s)	851
BmgT120I	GGNCC	2 cut(s)	173, 1167
BmiI	GGNNCC	3 cut(s)	40, 857, 1168
BmrFI	CCNGG	5 cut(s)	325, 644, 852, 853, 1148
BmsI	GCATC	2 cut(s)	471, 806
BpiI	GAAGAC	1 cut(s)	682
BpmI	CTGGAG	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	2 cut(s)	852, 853
BsaBI	GATNNNNATC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	598, 851
BsaWI	WCCGGW	2 cut(s)	240, 260
BsaXI	ACNNNNNCTCC	4 cut(s)	162, 192, 1016, 1046
Bsc4I	CCNNNNNNNGG	5 cut(s)	229, 260, 837, 1010, 1153
Bse118I	RCCGGY	1 cut(s)	240
Bse1I	ACTGG	8 cut(s)	40, 76, 176, 370, 396, 472, 896, 962
Bse3DI	GCAATG	2 cut(s)	603, 1131
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	3 cut(s)	325, 644, 1148
BseDI	CCNNGG	2 cut(s)	598, 851
BseGI	GGATG	2 cut(s)	58, 821
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	5 cut(s)	229, 260, 837, 1010, 1153
BseMI	GCAATG	2 cut(s)	603, 1131
BseMII	CTCAG	1 cut(s)	969
BseNI	ACTGG	8 cut(s)	40, 76, 176, 370, 396, 472, 896, 962
BseXI	GCAGC	1 cut(s)	569
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	6 cut(s)	57, 175, 597, 767, 1169, 1183
BshTI	ACCGGT	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	3 cut(s)	241, 261, 852
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	5 cut(s)	229, 260, 837, 1010, 1153
BsmAI	GTCTC	2 cut(s)	249, 699
BsmFI	GGGAC	1 cut(s)	478
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	6 cut(s)	57, 175, 597, 767, 1169, 1183
Bso31I	GGTCTC	1 cut(s)	249
BsoBI	CYCGRG	1 cut(s)	851
Bsp1407I	TGTACA	2 cut(s)	474, 1219
Bsp143I	GATC	4 cut(s)	119, 250, 416, 1313
BspACI	CCGC	3 cut(s)	831, 1011, 1116
BspANI	GGCC	6 cut(s)	57, 175, 597, 767, 1169, 1183
BspCNI	CTCAG	1 cut(s)	970
BspLI	GGNNCC	3 cut(s)	40, 857, 1168
BspPI	GGATC	3 cut(s)	127, 245, 1321
BspTNI	GGTCTC	1 cut(s)	249
BsrDI	GCAATG	2 cut(s)	603, 1131
BsrFI	RCCGGY	1 cut(s)	240
BsrGI	TGTACA	2 cut(s)	474, 1219
BsrI	ACTGG	8 cut(s)	40, 76, 176, 370, 396, 472, 896, 962
BssAI	RCCGGY	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	598, 851
BssMI	GATC	4 cut(s)	119, 250, 416, 1313
Bst2UI	CCWGG	3 cut(s)	325, 644, 1148
Bst4CI	ACNGT	3 cut(s)	956, 1096, 1297
BstAUI	TGTACA	2 cut(s)	474, 1219
BstC8I	GCNNGC	1 cut(s)	916
BstDEI	CTNAG	4 cut(s)	188, 978, 1262, 1343
BstF5I	GGATG	2 cut(s)	58, 821
BstKTI	GATC	4 cut(s)	122, 253, 419, 1316
BstMAI	GTCTC	2 cut(s)	249, 699
BstMBI	GATC	4 cut(s)	119, 250, 416, 1313
BstMWI	GCNNNNNNNGC	1 cut(s)	816
BstNI	CCWGG	3 cut(s)	325, 644, 1148
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	5 cut(s)	323, 642, 850, 851, 1146
BstSFI	CTRYAG	1 cut(s)	952
BstV1I	GCAGC	1 cut(s)	569
BstV2I	GAAGAC	1 cut(s)	682
BstX2I	RGATCY	1 cut(s)	119
BstXI	CCANNNNNNTGG	1 cut(s)	701
BstYI	RGATCY	1 cut(s)	119
BsuI	GTATCC	1 cut(s)	818
BsuRI	GGCC	6 cut(s)	57, 175, 597, 767, 1169, 1183
BtgZI	GCGATG	1 cut(s)	694
BtsCI	GGATG	2 cut(s)	58, 821
BtsI	GCAGTG	2 cut(s)	105, 387
BtsIMutI	CAGTG	2 cut(s)	105, 387
Cac8I	GCNNGC	1 cut(s)	916
CaiI	CAGNNNCTG	1 cut(s)	977
Cfr10I	RCCGGY	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	173, 1167
Cfr9I	CCCGGG	1 cut(s)	851
CsiI	ACCWGGT	2 cut(s)	323, 1146
Csp6I	GTAC	5 cut(s)	147, 475, 727, 1213, 1220
CspAI	ACCGGT	1 cut(s)	240
CviAII	CATG	7 cut(s)	141, 283, 355, 443, 478, 535, 565
CviQI	GTAC	5 cut(s)	147, 475, 727, 1213, 1220
DdeI	CTNAG	4 cut(s)	188, 978, 1262, 1343
DpnI	GATC	4 cut(s)	121, 252, 418, 1315
DpnII	GATC	4 cut(s)	119, 250, 416, 1313
EaeI	YGGCCR	1 cut(s)	55
Eco147I	AGGCCT	1 cut(s)	767
Eco31I	GGTCTC	1 cut(s)	249
Eco32I	GATATC	1 cut(s)	944
Eco57I	CTGAAG	1 cut(s)	1060
Eco88I	CYCGRG	1 cut(s)	851
EcoO109I	RGGNCCY	1 cut(s)	1167
EcoRII	CCWGG	3 cut(s)	323, 642, 1146
EcoRV	GATATC	1 cut(s)	944
FaeI	CATG	7 cut(s)	144, 286, 358, 446, 481, 538, 568
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	7 cut(s)	140, 282, 354, 442, 477, 534, 564
FblI	GTMKAC	1 cut(s)	951
Fnu4HI	GCNGC	2 cut(s)	558, 831
FokI	GGATG	2 cut(s)	45, 828
Fsp4HI	GCNGC	2 cut(s)	558, 831
FspBI	CTAG	3 cut(s)	158, 990, 1348
GluI	GCNGC	2 cut(s)	558, 831
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	6 cut(s)	57, 175, 597, 767, 1169, 1183
HapII	CCGG	3 cut(s)	241, 261, 852
Hin1II	CATG	7 cut(s)	144, 286, 358, 446, 481, 538, 568
HincII	GTYRAC	2 cut(s)	959, 1110
HindII	GTYRAC	2 cut(s)	959, 1110
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	5 cut(s)	301, 631, 870, 876, 1069
HpaII	CCGG	3 cut(s)	241, 261, 852
HphI	GGTGA	2 cut(s)	196, 250
Hpy166II	GTNNAC	5 cut(s)	952, 959, 1021, 1099, 1110
Hpy188I	TCNGA	5 cut(s)	232, 414, 753, 875, 1091
Hpy188III	TCNNGA	6 cut(s)	20, 123, 248, 499, 743, 862
Hpy8I	GTNNAC	5 cut(s)	952, 959, 1021, 1099, 1110
HpyAV	CCTTC	7 cut(s)	229, 350, 431, 757, 805, 1084, 1316
HpyCH4III	ACNGT	3 cut(s)	956, 1096, 1297
HpyCH4IV	ACGT	1 cut(s)	1101
HpyCH4V	TGCA	6 cut(s)	152, 392, 557, 918, 971, 1124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	816
HpyF3I	CTNAG	4 cut(s)	188, 978, 1262, 1343
HpySE526I	ACGT	1 cut(s)	1101
Hsp92II	CATG	7 cut(s)	144, 286, 358, 446, 481, 538, 568
Kzo9I	GATC	4 cut(s)	119, 250, 416, 1313
Lsp1109I	GCAGC	1 cut(s)	569
LweI	GCATC	2 cut(s)	471, 806
MabI	ACCWGGT	2 cut(s)	323, 1146
MaeI	CTAG	3 cut(s)	158, 990, 1348
MaeII	ACGT	1 cut(s)	1101
MaeIII	GTNAC	5 cut(s)	202, 236, 510, 787, 1291
MalI	GATC	4 cut(s)	121, 252, 418, 1315
MboI	GATC	4 cut(s)	119, 250, 416, 1313
MboII	GAAGA	7 cut(s)	207, 682, 731, 772, 790, 917, 1006
MfeI	CAATTG	1 cut(s)	1119
MflI	RGATCY	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	3 cut(s)	677, 747, 1119
MluNI	TGGCCA	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	34
Mox20I	TGGCCA	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	1073
MscI	TGGCCA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	1011
MspI	CCGG	3 cut(s)	241, 261, 852
MspR9I	CCNGG	5 cut(s)	325, 644, 852, 853, 1148
MunI	CAATTG	1 cut(s)	1119
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	3 cut(s)	325, 644, 1148
MwoI	GCNNNNNNNGC	1 cut(s)	816
NciI	CCSGG	2 cut(s)	852, 853
NdeII	GATC	4 cut(s)	119, 250, 416, 1313
NlaIII	CATG	7 cut(s)	144, 286, 358, 446, 481, 538, 568
NlaIV	GGNNCC	3 cut(s)	40, 857, 1168
NmeAIII	GCCGAG	1 cut(s)	579
NmuCI	GTSAC	4 cut(s)	202, 510, 787, 1291
NspI	RCATGY	1 cut(s)	358
OliI	CACNNNNGTG	1 cut(s)	110
PceI	AGGCCT	1 cut(s)	767
PcsI	WCGNNNNNNNCGW	1 cut(s)	879
PctI	GAATGC	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	1073
PfeI	GAWTC	5 cut(s)	301, 631, 870, 876, 1069
PflMI	CCANNNNNTGG	1 cut(s)	1153
PinAI	ACCGGT	1 cut(s)	240
PkrI	GCNGC	2 cut(s)	559, 832
Psp6I	CCWGG	3 cut(s)	323, 642, 1146
PspGI	CCWGG	3 cut(s)	323, 642, 1146
PspN4I	GGNNCC	3 cut(s)	40, 857, 1168
PspPI	GGNCC	2 cut(s)	173, 1167
PsrI	GAACNNNNNNTAC	2 cut(s)	1013, 1045
PstNI	CAGNNNCTG	1 cut(s)	977
PsuI	RGATCY	1 cut(s)	119
RsaI	GTAC	5 cut(s)	148, 476, 728, 1214, 1221
RsaNI	GTAC	5 cut(s)	147, 475, 727, 1213, 1220
RseI	CAYNNNNRTG	1 cut(s)	110
SatI	GCNGC	2 cut(s)	558, 831
Sau3AI	GATC	4 cut(s)	119, 250, 416, 1313
Sau96I	GGNCC	2 cut(s)	173, 1167
ScaI	AGTACT	1 cut(s)	148
ScrFI	CCNGG	5 cut(s)	325, 644, 852, 853, 1148
SexAI	ACCWGGT	2 cut(s)	323, 1146
SfaNI	GCATC	2 cut(s)	471, 806
SfcI	CTRYAG	1 cut(s)	952
SmaI	CCCGGG	1 cut(s)	853
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	3 cut(s)	677, 747, 1119
SseBI	AGGCCT	1 cut(s)	767
SsiI	CCGC	3 cut(s)	831, 1011, 1116
SspMI	CTAG	3 cut(s)	158, 990, 1348
StuI	AGGCCT	1 cut(s)	767
StyD4I	CCNGG	5 cut(s)	323, 642, 850, 851, 1146
TaaI	ACNGT	3 cut(s)	956, 1096, 1297
TaiI	ACGT	1 cut(s)	1104
TaqI	TCGA	1 cut(s)	268
TasI	AATT	3 cut(s)	677, 747, 1119
TatI	WGTACW	4 cut(s)	146, 474, 1212, 1219
TauI	GCSGC	1 cut(s)	833
TfiI	GAWTC	5 cut(s)	301, 631, 870, 876, 1069
TscAI	CASTG	2 cut(s)	112, 394
TseFI	GTSAC	4 cut(s)	202, 510, 787, 1291
TseI	GCWGC	1 cut(s)	557
Tsp45I	GTSAC	4 cut(s)	202, 510, 787, 1291
TspDTI	ATGAA	6 cut(s)	299, 459, 551, 574, 773, 917
TspGWI	ACGGA	1 cut(s)	714
TspMI	CCCGGG	1 cut(s)	851
TspRI	CASTG	2 cut(s)	112, 394
Van91I	CCANNNNNTGG	1 cut(s)	1153
XapI	RAATTY	1 cut(s)	747
XceI	RCATGY	1 cut(s)	358
XmaI	CCCGGG	1 cut(s)	851
XmiI	GTMKAC	1 cut(s)	951
XmnI	GAANNNNTTC	1 cut(s)	1073
XspI	CTAG	3 cut(s)	158, 990, 1348
ZrmI	AGTACT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.