Rw5G045700

Amino acid permease

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
79671098 .. 79676064
4967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G045700.1

Sequence Viewer

Length: 1296 bp
ATGGGTGGGGAAGAAGCAGAACATGATCAGCAGTCACCATTGCTCCTTGGCTTTCCTTCAACAATGGAACCCAGTGAATCTATCAAAAGAACTGGGACCATGTGGACGGCAATAGCACATATAATAACAGGAGTAATAGGGGCAGGGGTGTTATCCCTGGCCTGGAGTGTGGCTCAACTAGGGTGGATTGCCGGTCCATTGCTCATGATAGTCTTTGCTTCGGTCACCATCGTCTCCAACAACATTCTCTCTGACTGCTACAGATACCCGGATCCATATGCCCCGACCCGAAACAGGTCCTATTTGGAAGCTGTGAAGCTGTACTTAGGAGACAAGCTGCAAACAGTGACTGCCGTATTTGTACATGAGAGCTTGTATGGCAGTGGAATTGCCTATACCATTACTGCTGCTGGCAGTGTCAAAGCGATTCTGAAGTCAAACTGTTATCACAAGGAAGGGCATCAGGCTTCATCAATCATGTCCTTCGCCTACTCTTTTATTGGACTTGGCCTCGGCTTTGCCAAAGTAATAGAAAATGGGAGTGTTAAAGGGAGCTTGTCAGGAGTTTCAACCTCTAGTTTTGCTGCTAAATTATGGTTAATCTTCCAAGCAATTGGGGACATTGCTTTTGCCTATCCATACTCTATTATTCTTTTTGAGATTCAGGATACGTTAAAGTCCCCTCCAGCAGAAAACTACACGATGAAGAGGGCCTCTGTGATTGCCATCATTGTCACAACTTTTTTCTACCTCTGCTGCGGTTGCTTTGGATATGCAGCCTTTGGGGATGACACGCCGGGGAATCTCTTGACTGGATTTGGGTTTTACGAGCCTTACTGGCTCATTGATTTTGCTAATGCTTGCATAGTTCTTCATTTGGTGGGAGGATATCAGGTCTATAGTCAGCCAGTATTTGGAGTTGCTGAGAGATGGTTTAGCAAGAAGTATCCAAACAGTGCATTTGTGAACAACTTTTACAGCTTCAAAATCCCAATGTTTGCGAGATTTCAAGTGAATCCCTTCAGGCTATGTTTCCGGACTGTTTATGTCATTTCAACTACAGTAATTGCAATCCTCTTTCCTTATTTCAACCAAGTTTTGGGAGTGTTAGGCGCCCTGAACTTTTGGCCCTTGGCTATATTTTTTCCTGTAGAGATGTACTTTGTACAAAAGAAAATTGGGACATGGACCAAGAAATGGATAGTATTACAGGCATTCAGTTTTGTTTGCTTTCTTGTGACAGTTATGGGTGTCATTGGATCAGTTGAAGGACTTATAAGTGCCAAACTTAGCTAG

Protein Analysis

431

Amino Acids

47.49

Weight (kDa)

8.47

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 30 - 169 2.4e-28 Transmembrane amino acid transporter protein
Aa_trans PF01490 157 - 426 5.2e-58 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1277
AccB1I GGYRCC 1 cut(s) 1112
AccB7I CCANNNNNTGG 3 cut(s) 914, 1099, 1197
AccIII TCCGGA 1 cut(s) 1035
AciI CCGC 1 cut(s) 759
AclWI GGATC 3 cut(s) 266, 279, 1267
AcuI CTGAAG 2 cut(s) 452, 1006
AcyI GRCGYC 1 cut(s) 1113
AfaI GTAC 4 cut(s) 323, 363, 1160, 1167
AfiI CCNNNNNNNGG 5 cut(s) 162, 294, 914, 1099, 1197
AgsI TTSAA 7 cut(s) 60, 570, 985, 1010, 1056, 1090, 1268
AjnI CCWGG 2 cut(s) 156, 161
AluBI AGCT 7 cut(s) 311, 319, 337, 372, 555, 981, 1293
AluI AGCT 7 cut(s) 311, 319, 337, 372, 555, 981, 1293
Alw26I GTCTC 2 cut(s) 238, 324
AlwI GGATC 3 cut(s) 266, 279, 1267
AlwNI CAGNNNCTG 1 cut(s) 350
Aor13HI TCCGGA 1 cut(s) 1035
AoxI GGCC 4 cut(s) 159, 508, 711, 1127
ApeKI GCWGC 5 cut(s) 337, 407, 584, 756, 776
ArsI GACNNNNNNTTYG 2 cut(s) 611, 643
Asp700I GAANNNNTTC 1 cut(s) 1019
AspLEI GCGC 1 cut(s) 1115
AspS9I GGNCC 6 cut(s) 96, 194, 297, 711, 1128, 1188
AsuC2I CCSGG 2 cut(s) 269, 798
AsuHPI GGTGA 2 cut(s) 27, 217
AvaII GGWCC 4 cut(s) 96, 194, 297, 1188
BamHI GGATCC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 1112
BbvI GCAGC 5 cut(s) 324, 394, 571, 743, 788
BccI CCATC 3 cut(s) 236, 734, 924
BceAI ACGGC 2 cut(s) 123, 338
BciT130I CCWGG 2 cut(s) 158, 163
BciVI GTATCC 2 cut(s) 661, 957
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 2 cut(s) 269, 798
BcoDI GTCTC 2 cut(s) 238, 324
BfaI CTAG 3 cut(s) 179, 576, 1294
BfmI CTRYAG 4 cut(s) 259, 898, 1059, 1149
BfoI RGCGCY 1 cut(s) 1116
BfuI GTATCC 2 cut(s) 661, 957
BglI GCCNNNNNGGC 1 cut(s) 838
BisI GCNGC 5 cut(s) 338, 408, 585, 757, 777
BlsI GCNGC 5 cut(s) 339, 409, 586, 758, 778
Bme1390I CCNGG 4 cut(s) 158, 163, 269, 798
Bme18I GGWCC 4 cut(s) 96, 194, 297, 1188
BmgT120I GGNCC 6 cut(s) 96, 194, 297, 711, 1128, 1188
BmiI GGNNCC 4 cut(s) 69, 97, 273, 1114
BmrFI CCNGG 4 cut(s) 158, 163, 269, 798
BmrI ACTGGG 2 cut(s) 66, 102
BmsI GCATC 1 cut(s) 469
BmuI ACTGGG 2 cut(s) 66, 102
BplI GAGNNNNNCTC 2 cut(s) 157, 189
BpmI CTGGAG 2 cut(s) 184, 669
BpuMI CCSGG 2 cut(s) 269, 798
BsaBI GATNNNNATC 1 cut(s) 725
BsaHI GRCGYC 1 cut(s) 1113
BsaJI CCNNGG 5 cut(s) 46, 156, 511, 797, 1131
BsaWI WCCGGW 1 cut(s) 1035
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 5 cut(s) 162, 294, 914, 1099, 1197
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 5 cut(s) 72, 97, 817, 842, 908
Bse3DI GCAATG 3 cut(s) 38, 197, 621
Bse8I GATNNNNATC 1 cut(s) 725
BseAI TCCGGA 1 cut(s) 1035
BseBI CCWGG 2 cut(s) 158, 163
BseDI CCNNGG 5 cut(s) 46, 156, 511, 797, 1131
BseGI GGATG 1 cut(s) 793
BseJI GATNNNNATC 1 cut(s) 725
BseLI CCNNNNNNNGG 5 cut(s) 162, 294, 914, 1099, 1197
BseMI GCAATG 3 cut(s) 38, 197, 621
BseMII CTCAG 1 cut(s) 915
BseNI ACTGG 5 cut(s) 72, 97, 817, 842, 908
BseXI GCAGC 5 cut(s) 324, 394, 571, 743, 788
BshFI GGCC 4 cut(s) 161, 510, 713, 1129
BshNI GGYRCC 1 cut(s) 1112
BsiSI CCGG 4 cut(s) 192, 269, 797, 1036
BslFI GGGAC 4 cut(s) 109, 632, 664, 1195
BslI CCNNNNNNNGG 5 cut(s) 162, 294, 914, 1099, 1197
BsmAI GTCTC 2 cut(s) 238, 324
BsmBI CGTCTC 1 cut(s) 238
BsmFI GGGAC 4 cut(s) 109, 632, 664, 1195
BsmI GAATGC 1 cut(s) 1214
BsnI GGCC 4 cut(s) 161, 510, 713, 1129
Bsp13I TCCGGA 1 cut(s) 1035
Bsp1407I TGTACA 2 cut(s) 361, 1165
Bsp143I GATC 3 cut(s) 25, 271, 1259
BspACI CCGC 1 cut(s) 759
BspANI GGCC 4 cut(s) 161, 510, 713, 1129
BspCNI CTCAG 1 cut(s) 916
BspEI TCCGGA 1 cut(s) 1035
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 4 cut(s) 69, 97, 273, 1114
BspPI GGATC 3 cut(s) 266, 279, 1267
BspT107I GGYRCC 1 cut(s) 1112
BsrDI GCAATG 3 cut(s) 38, 197, 621
BsrFI RCCGGY 1 cut(s) 191
BsrGI TGTACA 2 cut(s) 361, 1165
BsrI ACTGG 5 cut(s) 72, 97, 817, 842, 908
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 5 cut(s) 46, 156, 511, 797, 1131
BssMI GATC 3 cut(s) 25, 271, 1259
BssNI GRCGYC 1 cut(s) 1113
BssT1I CCWWGG 2 cut(s) 46, 1131
Bst2UI CCWGG 2 cut(s) 158, 163
Bst4CI ACNGT 6 cut(s) 346, 443, 956, 1042, 1063, 1243
Bst6I CTCTTC 1 cut(s) 701
BstACI GRCGYC 1 cut(s) 1113
BstAUI TGTACA 2 cut(s) 361, 1165
BstC8I GCNNGC 2 cut(s) 412, 862
BstDEI CTNAG 3 cut(s) 325, 924, 1289
BstEII GGTNACC 1 cut(s) 223
BstF5I GGATG 1 cut(s) 793
BstH2I RGCGCY 1 cut(s) 1116
BstHHI GCGC 1 cut(s) 1115
BstKTI GATC 3 cut(s) 28, 274, 1262
BstMAI GTCTC 2 cut(s) 238, 324
BstMBI GATC 3 cut(s) 25, 271, 1259
BstMWI GCNNNNNNNGC 3 cut(s) 378, 762, 838
BstNI CCWGG 2 cut(s) 158, 163
BstPI GGTNACC 1 cut(s) 223
BstSCI CCNGG 4 cut(s) 156, 161, 267, 796
BstSFI CTRYAG 4 cut(s) 259, 898, 1059, 1149
BstV1I GCAGC 5 cut(s) 324, 394, 571, 743, 788
BstX2I RGATCY 1 cut(s) 271
BstXI CCANNNNNNTGG 1 cut(s) 614
BstYI RGATCY 1 cut(s) 271
BsuI GTATCC 2 cut(s) 661, 957
BsuRI GGCC 4 cut(s) 161, 510, 713, 1129
BtsCI GGATG 1 cut(s) 793
BtsI GCAGTG 2 cut(s) 388, 421
BtsIMutI CAGTG 5 cut(s) 79, 351, 388, 421, 961
Cac8I GCNNGC 2 cut(s) 412, 862
CaiI CAGNNNCTG 1 cut(s) 350
CciI TCATGA 1 cut(s) 204
CfoI GCGC 1 cut(s) 1115
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 6 cut(s) 96, 194, 297, 711, 1128, 1188
Csp6I GTAC 4 cut(s) 322, 362, 1159, 1166
CspCI CAANNNNNGTGG 2 cut(s) 164, 199
CviAII CATG 6 cut(s) 23, 100, 205, 365, 478, 1185
CviQI GTAC 4 cut(s) 322, 362, 1159, 1166
DdeI CTNAG 3 cut(s) 325, 924, 1289
DinI GGCGCC 1 cut(s) 1114
DpnI GATC 3 cut(s) 27, 273, 1261
DpnII GATC 3 cut(s) 25, 271, 1259
Eam1104I CTCTTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 701
Eco130I CCWWGG 2 cut(s) 46, 1131
Eco32I GATATC 1 cut(s) 890
Eco47I GGWCC 4 cut(s) 96, 194, 297, 1188
Eco57I CTGAAG 2 cut(s) 452, 1006
Eco91I GGTNACC 1 cut(s) 223
EcoO109I RGGNCCY 2 cut(s) 297, 711
EcoO65I GGTNACC 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 156, 161
EcoRV GATATC 1 cut(s) 890
EcoT14I CCWWGG 2 cut(s) 46, 1131
EgeI GGCGCC 1 cut(s) 1114
EheI GGCGCC 1 cut(s) 1114
ErhI CCWWGG 2 cut(s) 46, 1131
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 6 cut(s) 26, 103, 208, 368, 481, 1188
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FaqI GGGAC 4 cut(s) 109, 632, 664, 1195
FatI CATG 6 cut(s) 22, 99, 204, 364, 477, 1184
FauNDI CATATG 1 cut(s) 277
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 5 cut(s) 338, 408, 585, 757, 777
FokI GGATG 1 cut(s) 800
Fsp4HI GCNGC 5 cut(s) 338, 408, 585, 757, 777
FspBI CTAG 3 cut(s) 179, 576, 1294
GlaI GCGC 1 cut(s) 1114
GluI GCNGC 5 cut(s) 338, 408, 585, 757, 777
GsuI CTGGAG 2 cut(s) 184, 669
HaeII RGCGCY 1 cut(s) 1116
HaeIII GGCC 4 cut(s) 161, 510, 713, 1129
HapII CCGG 4 cut(s) 192, 269, 797, 1036
HhaI GCGC 1 cut(s) 1115
Hin1I GRCGYC 1 cut(s) 1113
Hin1II CATG 6 cut(s) 26, 103, 208, 368, 481, 1188
Hin6I GCGC 1 cut(s) 1113
HinP1I GCGC 1 cut(s) 1113
HinfI GANTC 5 cut(s) 77, 427, 661, 802, 1015
HpaII CCGG 4 cut(s) 192, 269, 797, 1036
HphI GGTGA 2 cut(s) 27, 217
Hpy166II GTNNAC 2 cut(s) 105, 967
Hpy188I TCNGA 2 cut(s) 253, 432
Hpy188III TCNNGA 5 cut(s) 205, 561, 665, 808, 1036
Hpy8I GTNNAC 2 cut(s) 105, 967
HpyAV CCTTC 5 cut(s) 66, 449, 493, 1030, 1262
HpyCH4III ACNGT 6 cut(s) 346, 443, 956, 1042, 1063, 1243
HpyCH4IV ACGT 1 cut(s) 671
HpyCH4V TGCA 5 cut(s) 340, 776, 864, 959, 1070
HpyF10VI GCNNNNNNNGC 3 cut(s) 378, 762, 838
HpyF3I CTNAG 3 cut(s) 325, 924, 1289
HpySE526I ACGT 1 cut(s) 671
Hsp92I GRCGYC 1 cut(s) 1113
Hsp92II CATG 6 cut(s) 26, 103, 208, 368, 481, 1188
HspAI GCGC 1 cut(s) 1113
KasI GGCGCC 1 cut(s) 1112
Kpn2I TCCGGA 1 cut(s) 1035
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 3 cut(s) 25, 271, 1259
LmnI GCTCC 2 cut(s) 48, 552
Lsp1109I GCAGC 5 cut(s) 324, 394, 571, 743, 788
LweI GCATC 1 cut(s) 469
MaeI CTAG 3 cut(s) 179, 576, 1294
MaeII ACGT 1 cut(s) 671
MaeIII GTNAC 5 cut(s) 33, 223, 346, 733, 1237
MalI GATC 3 cut(s) 27, 273, 1261
MboI GATC 3 cut(s) 25, 271, 1259
MboII GAAGA 4 cut(s) 23, 595, 718, 863
MfeI CAATTG 1 cut(s) 612
MflI RGATCY 1 cut(s) 271
MluCI AATT 5 cut(s) 387, 590, 612, 1065, 1176
Mly113I GGCGCC 1 cut(s) 1113
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 8 cut(s) 521, 583, 693, 702, 724, 761, 878, 1085
MroI TCCGGA 1 cut(s) 1035
MroXI GAANNNNTTC 1 cut(s) 1019
MseI TTAA 3 cut(s) 546, 599, 674
MspI CCGG 4 cut(s) 192, 269, 797, 1036
MspR9I CCNGG 4 cut(s) 158, 163, 269, 798
MunI CAATTG 1 cut(s) 612
Mva1269I GAATGC 1 cut(s) 1214
MvaI CCWGG 2 cut(s) 158, 163
MwoI GCNNNNNNNGC 3 cut(s) 378, 762, 838
NarI GGCGCC 1 cut(s) 1113
NciI CCSGG 2 cut(s) 269, 798
NdeI CATATG 1 cut(s) 277
NdeII GATC 3 cut(s) 25, 271, 1259
NlaIII CATG 6 cut(s) 26, 103, 208, 368, 481, 1188
NlaIV GGNNCC 4 cut(s) 69, 97, 273, 1114
NmeAIII GCCGAG 1 cut(s) 492
NmuCI GTSAC 5 cut(s) 33, 223, 346, 733, 1237
PagI TCATGA 1 cut(s) 204
PctI GAATGC 1 cut(s) 1214
PdmI GAANNNNTTC 1 cut(s) 1019
PfeI GAWTC 5 cut(s) 77, 427, 661, 802, 1015
PflMI CCANNNNNTGG 3 cut(s) 914, 1099, 1197
PkrI GCNGC 5 cut(s) 339, 409, 586, 758, 778
PluTI GGCGCC 1 cut(s) 1116
PpuMI RGGWCCY 1 cut(s) 297
PsiI TTATAA 1 cut(s) 1277
Psp5II RGGWCCY 1 cut(s) 297
Psp6I CCWGG 2 cut(s) 156, 161
PspEI GGTNACC 1 cut(s) 223
PspGI CCWGG 2 cut(s) 156, 161
PspN4I GGNNCC 4 cut(s) 69, 97, 273, 1114
PspPI GGNCC 6 cut(s) 96, 194, 297, 711, 1128, 1188
PspPPI RGGWCCY 1 cut(s) 297
PsrI GAACNNNNNNTAC 2 cut(s) 959, 991
PstNI CAGNNNCTG 1 cut(s) 350
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 4 cut(s) 323, 363, 1160, 1167
RsaNI GTAC 4 cut(s) 322, 362, 1159, 1166
SaqAI TTAA 3 cut(s) 546, 599, 674
SatI GCNGC 5 cut(s) 338, 408, 585, 757, 777
Sau3AI GATC 3 cut(s) 25, 271, 1259
Sau96I GGNCC 6 cut(s) 96, 194, 297, 711, 1128, 1188
ScrFI CCNGG 4 cut(s) 158, 163, 269, 798
SfaNI GCATC 1 cut(s) 469
SfcI CTRYAG 4 cut(s) 259, 898, 1059, 1149
SfoI GGCGCC 1 cut(s) 1114
SinI GGWCC 4 cut(s) 96, 194, 297, 1188
Sse9I AATT 5 cut(s) 387, 590, 612, 1065, 1176
SsiI CCGC 1 cut(s) 759
SspDI GGCGCC 1 cut(s) 1112
SspMI CTAG 3 cut(s) 179, 576, 1294
StyD4I CCNGG 4 cut(s) 156, 161, 267, 796
StyI CCWWGG 2 cut(s) 46, 1131
TaaI ACNGT 6 cut(s) 346, 443, 956, 1042, 1063, 1243
TaiI ACGT 1 cut(s) 674
TaqII GACCGA 1 cut(s) 211
TasI AATT 5 cut(s) 387, 590, 612, 1065, 1176
TatI WGTACW 4 cut(s) 321, 361, 1158, 1165
TfiI GAWTC 5 cut(s) 77, 427, 661, 802, 1015
Tru1I TTAA 3 cut(s) 546, 599, 674
Tru9I TTAA 3 cut(s) 546, 599, 674
TscAI CASTG 5 cut(s) 79, 351, 388, 421, 961
TseFI GTSAC 5 cut(s) 33, 223, 346, 733, 1237
TseI GCWGC 5 cut(s) 337, 407, 584, 756, 776
Tsp45I GTSAC 5 cut(s) 33, 223, 346, 733, 1237
TspDTI ATGAA 3 cut(s) 459, 719, 863
TspRI CASTG 5 cut(s) 79, 351, 388, 421, 961
Van91I CCANNNNNTGG 3 cut(s) 914, 1099, 1197
VpaK11BI GGWCC 4 cut(s) 96, 194, 297, 1188
XmnI GAANNNNTTC 1 cut(s) 1019
XspI CTAG 3 cut(s) 179, 576, 1294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.