MD03G1040400.v1.1

Amino acid permease

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
3198378 .. 3205198
6821 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1040400.v1.1.491

Sequence Viewer

Length: 1371 bp
ATGGGTGGTGATGAAGCAGCAGAAGATCAGCAGCTACCGTTGCTCCAACCTCTCAAAAGAACAGGAACCATATGGACTGCAGTAGCACATATTATAACAGGCGTGATAGGAGCAGGAGTATTATCTCTTGCATGGAGTGTGGCTCAGCTGGGGTGGATTGCAGGTCCATTGCTTATGATTGTCTTTGCTTCAGTCACCATTCTTTCCAACAACCTCCTCTCCGACTGCTACCGATTCCCGGAATCCGATAGCCCGACGAGAGTCGGATCCTACATGGAAGCTGTCAAGGTCTACCTAGGAGAGAAGAGTAAAACAGTGTGTGCAATATTTGTACACGAGAGCTTGTATGGCTGTGGAATCGCTTACGTTATTACAGCTGCTAGCAGCGTCAAAGCCATTCAGAGATCAAACTGCTATCACAAAGAAGGGCATGAAGCTTCCTGTCAATATGGGACTGGTTTGTACATGATGCTATTTGGACTTGTCCAGATTGTAGTGTCACAAATACCAGATTTCCACAACATGGAATGGCTATCAGTTGTTGCAGCAATCATGTCGTTTACCTACTCTTTCATTGGACTTGGCCTCGGCATGGCGAAAGCAATAGAAAATGGGAGGATTCAAGGAAGCCTGGCAGGAGTGCCAACCTCTAATGTTGCTGATAAATTATGGTTAGTCTTCCAAGCACTTGGAGACATCGCTTTTGCCTATCCGTACTCTATTATTCTTCTTGAAATTCAGGATACTTTGAAGTCCCCTCCACCAGAAAATCAGACAATGAAGAAGGCCTCAATGATTGCCATATTTGTCACAACCTTCTTCTACCTCTGCTGTGGATGCTTTGGATACGCCGCCTTTGGGAATGACACGCCCGGGAACCTCTTGACAGGATTCGGATTCTACGAACCCTACTGGCTCATTGATTTTGCTAATGCTTGCATTGTTCTTCATTTGGTGGGAGGATATCAGGTCTACAGTCAACCAGTATTTGCAGTTGCTGAGAGATGGTCCAGGAAGAAATACCCAAACAGCGGATTTGTGAACAACTTTTACTCCATCAAAATCCCATTGTTGCCAAGATTTCAAGTGAATCCCTTCAGGCTGTGTTTCCGAACTGTTTACGTTGTATCAACTACCGCAATTGCGATGATATTTCCTTACTTCAACCAGGTTTTGGGAGTTTTAGGGGCCTTAAACTTTTGGCCCTTGGCTATATATTTCCCTGTTGAAATGTACTTTGTACAAAAGAGAATCGGGGCTTGGACAAAAAAATGGATTGTTCTAAGGATATTTAGTTTCGTTTGCTTTCTTGTGACGGTTGTGGGTGTGATTGGATCAGTTGAAGGACTTATTAGTGCCAAACTTAGCTAG

Protein Analysis

457

Amino Acids

50.32

Weight (kDa)

8.38

Isoelectric Point (pI)

30.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 20 - 451 3.7e-100 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 23 - 193 1.2e-06 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 152
AccB7I CCANNNNNTGG 2 cut(s) 523, 1174
AccI GTMKAC 2 cut(s) 291, 972
AciI CCGC 3 cut(s) 852, 1032, 1137
AclWI GGATC 3 cut(s) 261, 274, 1342
AcsI RAATTY 1 cut(s) 735
AcuI CTGAAG 2 cut(s) 174, 1081
AfaI GTAC 5 cut(s) 333, 464, 716, 1235, 1242
AfiI CCNNNNNNNGG 6 cut(s) 238, 523, 592, 858, 1031, 1174
AgsI TTSAA 7 cut(s) 623, 734, 751, 1085, 1165, 1229, 1343
AjnI CCWGG 3 cut(s) 630, 1010, 1167
AjuI GAANNNNNNNTTGG 2 cut(s) 1243, 1275
AluBI AGCT 7 cut(s) 34, 148, 281, 342, 377, 437, 1368
AluI AGCT 7 cut(s) 34, 148, 281, 342, 377, 437, 1368
Alw26I GTCTC 1 cut(s) 687
AlwI GGATC 3 cut(s) 261, 274, 1342
AlwNI CAGNNNCTG 1 cut(s) 998
Ama87I CYCGRG 1 cut(s) 872
AoxI GGCC 4 cut(s) 583, 786, 1188, 1202
ApeKI GCWGC 5 cut(s) 17, 31, 377, 384, 545
ApoI RAATTY 1 cut(s) 735
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
Asp700I GAANNNNTTC 1 cut(s) 1094
AspA2I CCTAGG 1 cut(s) 295
AspS9I GGNCC 4 cut(s) 164, 1008, 1188, 1203
AsuC2I CCSGG 3 cut(s) 239, 873, 874
AsuHPI GGTGA 2 cut(s) 20, 187
AsuNHI GCTAGC 1 cut(s) 380
AvaI CYCGRG 1 cut(s) 872
AvaII GGWCC 2 cut(s) 164, 1008
AvrII CCTAGG 1 cut(s) 295
BamHI GGATCC 1 cut(s) 266
BauI CACGAG 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 670
BbvI GCAGC 5 cut(s) 29, 43, 364, 396, 557
BccI CCATC 2 cut(s) 999, 1064
BcgI CGANNNNNNTGC 2 cut(s) 537, 571
BciT130I CCWGG 3 cut(s) 632, 1012, 1169
BciVI GTATCC 2 cut(s) 736, 839
BcnI CCSGG 3 cut(s) 239, 873, 874
BcoDI GTCTC 1 cut(s) 687
BfaI CTAG 3 cut(s) 296, 381, 1369
BfmI CTRYAG 2 cut(s) 78, 973
BfuAI ACCTGC 1 cut(s) 152
BfuI GTATCC 2 cut(s) 736, 839
BisI GCNGC 6 cut(s) 18, 32, 378, 385, 546, 852
BlnI CCTAGG 1 cut(s) 295
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 6 cut(s) 19, 33, 379, 386, 547, 853
Bme1390I CCNGG 6 cut(s) 239, 632, 873, 874, 1012, 1169
Bme18I GGWCC 2 cut(s) 164, 1008
BmeT110I CYCGRG 1 cut(s) 872
BmgT120I GGNCC 4 cut(s) 164, 1008, 1188, 1203
BmiI GGNNCC 4 cut(s) 67, 268, 878, 1189
BmrFI CCNGG 6 cut(s) 239, 632, 873, 874, 1012, 1169
BmsI GCATC 2 cut(s) 459, 827
BmtI GCTAGC 1 cut(s) 384
BoxI GACNNNNGTC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 670
BplI GAGNNNNNCTC 2 cut(s) 127, 159
Bpu1102I GCTNAGC 1 cut(s) 144
BpuMI CCSGG 3 cut(s) 239, 873, 874
BsaJI CCNNGG 4 cut(s) 295, 586, 872, 1206
BsaXI ACNNNNNCTCC 8 cut(s) 27, 57, 102, 132, 203, 233, 1037, 1067
Bsc4I CCNNNNNNNGG 6 cut(s) 238, 523, 592, 858, 1031, 1174
Bse1I ACTGG 3 cut(s) 460, 917, 983
Bse3DI GCAATG 1 cut(s) 167
BseBI CCWGG 3 cut(s) 632, 1012, 1169
BseDI CCNNGG 4 cut(s) 295, 586, 872, 1206
BseGI GGATG 1 cut(s) 842
BseLI CCNNNNNNNGG 6 cut(s) 238, 523, 592, 858, 1031, 1174
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 2 cut(s) 158, 990
BseNI ACTGG 3 cut(s) 460, 917, 983
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 5 cut(s) 29, 43, 364, 396, 557
BseYI CCCAGC 1 cut(s) 148
BshFI GGCC 4 cut(s) 585, 788, 1190, 1204
BsiHKCI CYCGRG 1 cut(s) 872
BsiSI CCGG 2 cut(s) 239, 873
BslFI GGGAC 2 cut(s) 466, 739
BslI CCNNNNNNNGG 6 cut(s) 238, 523, 592, 858, 1031, 1174
BsmAI GTCTC 1 cut(s) 687
BsmFI GGGAC 2 cut(s) 466, 739
BsnI GGCC 4 cut(s) 585, 788, 1190, 1204
BsoBI CYCGRG 1 cut(s) 872
Bsp1407I TGTACA 3 cut(s) 331, 462, 1240
Bsp143I GATC 4 cut(s) 25, 266, 404, 1334
Bsp1720I GCTNAGC 1 cut(s) 144
BspACI CCGC 3 cut(s) 852, 1032, 1137
BspANI GGCC 4 cut(s) 585, 788, 1190, 1204
BspCNI CTCAG 2 cut(s) 157, 991
BspLI GGNNCC 4 cut(s) 67, 268, 878, 1189
BspMAI CTGCAG 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 152
BspOI GCTAGC 1 cut(s) 384
BspPI GGATC 3 cut(s) 261, 274, 1342
BsrDI GCAATG 1 cut(s) 167
BsrGI TGTACA 3 cut(s) 331, 462, 1240
BsrI ACTGG 3 cut(s) 460, 917, 983
BssECI CCNNGG 4 cut(s) 295, 586, 872, 1206
BssMI GATC 4 cut(s) 25, 266, 404, 1334
BssSI CACGAG 1 cut(s) 335
BssT1I CCWWGG 2 cut(s) 295, 1206
Bst2BI CACGAG 1 cut(s) 335
Bst2UI CCWGG 3 cut(s) 632, 1012, 1169
Bst4CI ACNGT 5 cut(s) 39, 316, 977, 1117, 1318
Bst6I CTCTTC 1 cut(s) 299
BstAUI TGTACA 3 cut(s) 331, 462, 1240
BstC8I GCNNGC 2 cut(s) 382, 937
BstDEI CTNAG 4 cut(s) 144, 999, 1283, 1364
BstF5I GGATG 1 cut(s) 842
BstKTI GATC 4 cut(s) 28, 269, 407, 1337
BstMAI GTCTC 1 cut(s) 687
BstMBI GATC 4 cut(s) 25, 266, 404, 1334
BstMWI GCNNNNNNNGC 3 cut(s) 40, 348, 837
BstNI CCWGG 3 cut(s) 632, 1012, 1169
BstPAI GACNNNNGTC 1 cut(s) 260
BstSCI CCNGG 6 cut(s) 237, 630, 871, 872, 1010, 1167
BstSFI CTRYAG 2 cut(s) 78, 973
BstV1I GCAGC 5 cut(s) 29, 43, 364, 396, 557
BstV2I GAAGAC 1 cut(s) 670
BstX2I RGATCY 1 cut(s) 266
BstXI CCANNNNNNTGG 1 cut(s) 689
BstYI RGATCY 1 cut(s) 266
BsuI GTATCC 2 cut(s) 736, 839
BsuRI GGCC 4 cut(s) 585, 788, 1190, 1204
BtgZI GCGATG 2 cut(s) 682, 1160
BtsCI GGATG 1 cut(s) 842
BtsIMutI CAGTG 1 cut(s) 321
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 382, 937
CaiI CAGNNNCTG 1 cut(s) 998
Cfr13I GGNCC 4 cut(s) 164, 1008, 1188, 1203
Cfr9I CCCGGG 1 cut(s) 872
CseI GACGC 1 cut(s) 376
CsiI ACCWGGT 1 cut(s) 1167
Csp6I GTAC 5 cut(s) 332, 463, 715, 1234, 1241
CviAII CATG 7 cut(s) 132, 274, 431, 466, 523, 553, 592
CviQI GTAC 5 cut(s) 332, 463, 715, 1234, 1241
DdeI CTNAG 4 cut(s) 144, 999, 1283, 1364
DpnI GATC 4 cut(s) 27, 268, 406, 1336
DpnII GATC 4 cut(s) 25, 266, 404, 1334
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco130I CCWWGG 2 cut(s) 295, 1206
Eco147I AGGCCT 1 cut(s) 788
Eco32I GATATC 1 cut(s) 965
Eco47I GGWCC 2 cut(s) 164, 1008
Eco57I CTGAAG 2 cut(s) 174, 1081
Eco88I CYCGRG 1 cut(s) 872
EcoO109I RGGNCCY 1 cut(s) 1188
EcoRII CCWGG 3 cut(s) 630, 1010, 1167
EcoRV GATATC 1 cut(s) 965
EcoT14I CCWWGG 2 cut(s) 295, 1206
ErhI CCWWGG 2 cut(s) 295, 1206
FaeI CATG 7 cut(s) 135, 277, 434, 469, 526, 556, 595
FaqI GGGAC 2 cut(s) 466, 739
FatI CATG 7 cut(s) 131, 273, 430, 465, 522, 552, 591
FauNDI CATATG 1 cut(s) 71
FblI GTMKAC 2 cut(s) 291, 972
Fnu4HI GCNGC 6 cut(s) 18, 32, 378, 385, 546, 852
FokI GGATG 1 cut(s) 849
Fsp4HI GCNGC 6 cut(s) 18, 32, 378, 385, 546, 852
FspBI CTAG 3 cut(s) 296, 381, 1369
GluI GCNGC 6 cut(s) 18, 32, 378, 385, 546, 852
GsaI CCCAGC 1 cut(s) 152
HaeIII GGCC 4 cut(s) 585, 788, 1190, 1204
HapII CCGG 2 cut(s) 239, 873
HgaI GACGC 1 cut(s) 376
Hin1II CATG 7 cut(s) 135, 277, 434, 469, 526, 556, 595
HincII GTYRAC 1 cut(s) 980
HindII GTYRAC 1 cut(s) 980
HindIII AAGCTT 1 cut(s) 435
HinfI GANTC 9 cut(s) 234, 242, 261, 357, 619, 891, 897, 1090, 1251
HpaII CCGG 2 cut(s) 239, 873
HphI GGTGA 2 cut(s) 20, 187
Hpy166II GTNNAC 7 cut(s) 292, 334, 561, 973, 980, 1042, 1120
Hpy188I TCNGA 7 cut(s) 223, 247, 266, 402, 774, 896, 1112
Hpy188III TCNNGA 4 cut(s) 487, 731, 740, 883
Hpy8I GTNNAC 7 cut(s) 292, 334, 561, 973, 980, 1042, 1120
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 5 cut(s) 419, 778, 826, 1105, 1337
HpyCH4III ACNGT 5 cut(s) 39, 316, 977, 1117, 1318
HpyCH4IV ACGT 2 cut(s) 366, 1122
HpyCH4V TGCA 7 cut(s) 80, 131, 161, 323, 545, 939, 992
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 348, 837
HpyF3I CTNAG 4 cut(s) 144, 999, 1283, 1364
HpySE526I ACGT 2 cut(s) 366, 1122
Hsp92II CATG 7 cut(s) 135, 277, 434, 469, 526, 556, 595
Kzo9I GATC 4 cut(s) 25, 266, 404, 1334
LmnI GCTCC 2 cut(s) 48, 110
Lsp1109I GCAGC 5 cut(s) 29, 43, 364, 396, 557
LweI GCATC 2 cut(s) 459, 827
MabI ACCWGGT 1 cut(s) 1167
MaeI CTAG 3 cut(s) 296, 381, 1369
MaeII ACGT 2 cut(s) 366, 1122
MaeIII GTNAC 4 cut(s) 193, 498, 808, 1312
MalI GATC 4 cut(s) 27, 268, 406, 1336
MboI GATC 4 cut(s) 25, 266, 404, 1334
MboII GAAGA 8 cut(s) 35, 316, 670, 719, 793, 811, 938, 1027
MfeI CAATTG 1 cut(s) 1140
MflI RGATCY 1 cut(s) 266
MluCI AATT 3 cut(s) 665, 735, 1140
MlyI GAGTC 1 cut(s) 270
MmeI TCCRAC 4 cut(s) 70, 231, 244, 246
MroXI GAANNNNTTC 1 cut(s) 1094
MseI TTAA 1 cut(s) 1193
MspA1I CMGCKG 3 cut(s) 148, 377, 1032
MspI CCGG 2 cut(s) 239, 873
MspR9I CCNGG 6 cut(s) 239, 632, 873, 874, 1012, 1169
MunI CAATTG 1 cut(s) 1140
MvaI CCWGG 3 cut(s) 632, 1012, 1169
MwoI GCNNNNNNNGC 3 cut(s) 40, 348, 837
NciI CCSGG 3 cut(s) 239, 873, 874
NdeI CATATG 1 cut(s) 71
NdeII GATC 4 cut(s) 25, 266, 404, 1334
NheI GCTAGC 1 cut(s) 380
NlaIII CATG 7 cut(s) 135, 277, 434, 469, 526, 556, 595
NlaIV GGNNCC 4 cut(s) 67, 268, 878, 1189
NmeAIII GCCGAG 1 cut(s) 567
NmuCI GTSAC 4 cut(s) 193, 498, 808, 1312
PceI AGGCCT 1 cut(s) 788
PcsI WCGNNNNNNNCGW 1 cut(s) 900
PdmI GAANNNNTTC 1 cut(s) 1094
PfeI GAWTC 8 cut(s) 234, 242, 357, 619, 891, 897, 1090, 1251
PflMI CCANNNNNTGG 2 cut(s) 523, 1174
PfoI TCCNGGA 2 cut(s) 237, 1010
PkrI GCNGC 6 cut(s) 19, 33, 379, 386, 547, 853
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PshAI GACNNNNGTC 1 cut(s) 260
PsiI TTATAA 1 cut(s) 95
Psp6I CCWGG 3 cut(s) 630, 1010, 1167
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 3 cut(s) 630, 1010, 1167
PspN4I GGNNCC 4 cut(s) 67, 268, 878, 1189
PspPI GGNCC 4 cut(s) 164, 1008, 1188, 1203
PsrI GAACNNNNNNTAC 2 cut(s) 1034, 1066
PstI CTGCAG 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 998
PsuI RGATCY 1 cut(s) 266
PvuII CAGCTG 2 cut(s) 148, 377
RsaI GTAC 5 cut(s) 333, 464, 716, 1235, 1242
RsaNI GTAC 5 cut(s) 332, 463, 715, 1234, 1241
SaqAI TTAA 1 cut(s) 1193
SatI GCNGC 6 cut(s) 18, 32, 378, 385, 546, 852
Sau3AI GATC 4 cut(s) 25, 266, 404, 1334
Sau96I GGNCC 4 cut(s) 164, 1008, 1188, 1203
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 6 cut(s) 239, 632, 873, 874, 1012, 1169
SexAI ACCWGGT 1 cut(s) 1167
SfaNI GCATC 2 cut(s) 459, 827
SfcI CTRYAG 2 cut(s) 78, 973
SinI GGWCC 2 cut(s) 164, 1008
SmaI CCCGGG 1 cut(s) 874
Sse9I AATT 3 cut(s) 665, 735, 1140
SseBI AGGCCT 1 cut(s) 788
SsiI CCGC 3 cut(s) 852, 1032, 1137
SspI AATATT 1 cut(s) 327
SspMI CTAG 3 cut(s) 296, 381, 1369
StuI AGGCCT 1 cut(s) 788
StyD4I CCNGG 6 cut(s) 237, 630, 871, 872, 1010, 1167
StyI CCWWGG 2 cut(s) 295, 1206
TaaI ACNGT 5 cut(s) 39, 316, 977, 1117, 1318
TaiI ACGT 2 cut(s) 369, 1125
TasI AATT 3 cut(s) 665, 735, 1140
TatI WGTACW 4 cut(s) 331, 462, 1233, 1240
TauI GCSGC 1 cut(s) 854
TfiI GAWTC 8 cut(s) 234, 242, 357, 619, 891, 897, 1090, 1251
Tru1I TTAA 1 cut(s) 1193
Tru9I TTAA 1 cut(s) 1193
TscAI CASTG 1 cut(s) 321
TseFI GTSAC 4 cut(s) 193, 498, 808, 1312
TseI GCWGC 5 cut(s) 17, 31, 377, 384, 545
Tsp45I GTSAC 4 cut(s) 193, 498, 808, 1312
TspDTI ATGAA 5 cut(s) 27, 447, 562, 794, 938
TspGWI ACGGA 1 cut(s) 702
TspMI CCCGGG 1 cut(s) 872
TspRI CASTG 1 cut(s) 321
Van91I CCANNNNNTGG 2 cut(s) 523, 1174
VpaK11BI GGWCC 2 cut(s) 164, 1008
XapI RAATTY 1 cut(s) 735
XmaI CCCGGG 1 cut(s) 872
XmaJI CCTAGG 1 cut(s) 295
XmiI GTMKAC 2 cut(s) 291, 972
XmnI GAANNNNTTC 1 cut(s) 1094
XspI CTAG 3 cut(s) 296, 381, 1369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.