Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002116

Physical Location & Seq

Genomic Coordinates Forward (+)

2458767 .. 2460205

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g03110.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGTGGTGGTGAAACAGCAGAGCAGCTACCGTTGCTCCAACCTCTCAAAAGAACAGGAACCATATGGACTGCAATAGCACATATTATAACAGGTGTGATAGGAGCAGGAGTATTATCTCTTGCATGGAGTGTGGCTCAGCTGGGGTGGGTTGCAGGTCCATTGCTTATGATTGTCTTTGCTTCAGTCACCATTCTTTCCAACAACCTCCTCTCCGACTGCTACCGATTCCCGCATTCCGATAGCCCGACGAGAGTCGGATCCTACTTGGAAGCTGTCAAGGTCTACCTAGGAGAGAAGAGTCAAACAGTGTGTGCAATATTTGTACACGAGAGCTTGTATGGCTGCGGAATCGCTTACGTTATTACAGCTGCTAGCAGCATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0015711 GO:0015849 GO:0016020 GO:0034220 GO:0044464 GO:0046942 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

130

Amino Acids

13.65

Weight (kDa)

6.81

Isoelectric Point (pI)

24.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23810 AT5G23810 AT5G23810 AT5G23810 AT5G23810
fragaria_vesca	FvH4_3g41850 FvH4_3g41850 FvH4_3g41850
malus_domestica	MD03G1040400.v1.1 MD11G1041800.v1.1
prunus_persica	Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1
pyrus_communis	pycom03g03110 pycom03g03120 pycom08g18190 pycom11g03550 pycom11g03570 pycom11g03580
rosa_chinensis	RchiOBHm_Chr5g0075041 RchiOBHm_Chr5g0075051
rosa_laevigata	RLG00000036520 RLG00000036521
rosa_multiflora	Rmu_co8358743.1_g000001 Rmu_sc0006984.1_g000004 Rmu_sc0006984.1_g000012
rosa_roxburghii	Rroxscaffold_1G00006590 Rroxscaffold_1G00006610
rosa_rugosa	Rorug05G0435700
rosa_samantha	Rh5AG493000 Rh5AG493100 Rh5BG514300 Rh5BG514600 Rh5CG537900 Rh5CG538200 Rh5DG526600 Rh5DG526700 Rh5DG526900
rosa_wichuraiana	Rw5G045700 Rw5G045730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	2 cut(s)	233, 348
AclWI	GGATC	2 cut(s)	255, 268
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	1 cut(s)	327
AluBI	AGCT	5 cut(s)	28, 142, 275, 336, 371
AluI	AGCT	5 cut(s)	28, 142, 275, 336, 371
AlwI	GGATC	2 cut(s)	255, 268
ApeKI	GCWGC	4 cut(s)	25, 345, 371, 378
AspA2I	CCTAGG	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	23, 181
AsuNHI	GCTAGC	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	158
AvrII	CCTAGG	1 cut(s)	289
BamHI	GGATCC	1 cut(s)	260
BauI	CACGAG	1 cut(s)	329
BbvI	GCAGC	3 cut(s)	37, 332, 358
BfaI	CTAG	2 cut(s)	290, 375
BfuAI	ACCTGC	1 cut(s)	146
BisI	GCNGC	4 cut(s)	26, 346, 372, 379
BlnI	CCTAGG	1 cut(s)	289
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	4 cut(s)	27, 347, 373, 380
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	2 cut(s)	61, 262
BmtI	GCTAGC	1 cut(s)	378
BoxI	GACNNNNGTC	1 cut(s)	254
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
Bpu1102I	GCTNAGC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	289
BsaXI	ACNNNNNCTCC	6 cut(s)	21, 51, 96, 126, 197, 227
Bse3DI	GCAATG	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	289
BseMI	GCAATG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	3 cut(s)	37, 332, 358
BseYI	CCCAGC	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	235
Bsp1407I	TGTACA	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	260
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	2 cut(s)	233, 348
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	61, 262
BspMI	ACCTGC	1 cut(s)	146
BspOI	GCTAGC	1 cut(s)	378
BspPI	GGATC	2 cut(s)	255, 268
BsrDI	GCAATG	1 cut(s)	161
BsrGI	TGTACA	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	1 cut(s)	260
BssSI	CACGAG	1 cut(s)	329
BssT1I	CCWWGG	1 cut(s)	289
Bst2BI	CACGAG	1 cut(s)	329
Bst4CI	ACNGT	2 cut(s)	33, 310
Bst6I	CTCTTC	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	1 cut(s)	138
BstKTI	GATC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	260
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 342
BstPAI	GACNNNNGTC	1 cut(s)	254
BstV1I	GCAGC	3 cut(s)	37, 332, 358
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	315
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	1 cut(s)	126
CviJI	RGCY	8 cut(s)	28, 137, 142, 246, 275, 336, 345, 371
CviKI_1	RGCY	8 cut(s)	28, 137, 142, 246, 275, 336, 345, 371
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	1 cut(s)	129
FaiI	YATR	7 cut(s)	65, 67, 84, 89, 127, 170, 342
FatI	CATG	1 cut(s)	125
FauI	CCCGC	1 cut(s)	240
FauNDI	CATATG	1 cut(s)	65
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	4 cut(s)	26, 346, 372, 379
Fsp4HI	GCNGC	4 cut(s)	26, 346, 372, 379
FspBI	CTAG	2 cut(s)	290, 375
GluI	GCNGC	4 cut(s)	26, 346, 372, 379
GsaI	CCCAGC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	129
HinfI	GANTC	4 cut(s)	228, 255, 301, 351
HphI	GGTGA	2 cut(s)	23, 181
Hpy166II	GTNNAC	2 cut(s)	286, 328
Hpy188I	TCNGA	3 cut(s)	217, 241, 260
Hpy8I	GTNNAC	2 cut(s)	286, 328
Hpy99I	CGWCG	1 cut(s)	253
HpyCH4III	ACNGT	2 cut(s)	33, 310
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	4 cut(s)	74, 125, 155, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 342
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	260
LmnI	GCTCC	2 cut(s)	42, 104
LpnPI	CCDG	5 cut(s)	42, 78, 93, 128, 141
Lsp1109I	GCAGC	3 cut(s)	37, 332, 358
MaeI	CTAG	2 cut(s)	290, 375
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MboII	GAAGA	1 cut(s)	310
MflI	RGATCY	1 cut(s)	260
MlyI	GAGTC	2 cut(s)	264, 310
MmeI	TCCRAC	4 cut(s)	64, 225, 238, 240
MnlI	CCTC	3 cut(s)	54, 218, 221
MspA1I	CMGCKG	2 cut(s)	142, 371
Mva1269I	GAATGC	1 cut(s)	235
MwoI	GCNNNNNNNGC	2 cut(s)	34, 342
NdeI	CATATG	1 cut(s)	65
NdeII	GATC	1 cut(s)	260
NheI	GCTAGC	1 cut(s)	374
NlaIII	CATG	1 cut(s)	129
NlaIV	GGNNCC	2 cut(s)	61, 262
NmuCI	GTSAC	1 cut(s)	187
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	228, 351
PkrI	GCNGC	4 cut(s)	27, 347, 373, 380
PleI	GAGTC	2 cut(s)	263, 309
PpsI	GAGTC	2 cut(s)	263, 309
PshAI	GACNNNNGTC	1 cut(s)	254
PsiI	TTATAA	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	61, 262
PspPI	GGNCC	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	260
PvuII	CAGCTG	2 cut(s)	142, 371
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SatI	GCNGC	4 cut(s)	26, 346, 372, 379
Sau3AI	GATC	1 cut(s)	260
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	2 cut(s)	264, 310
SinI	GGWCC	1 cut(s)	158
SsiI	CCGC	2 cut(s)	233, 348
SspI	AATATT	1 cut(s)	321
SspMI	CTAG	2 cut(s)	290, 375
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	33, 310
TaiI	ACGT	1 cut(s)	363
TatI	WGTACW	1 cut(s)	325
TfiI	GAWTC	2 cut(s)	228, 351
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	4 cut(s)	25, 345, 371, 378
Tsp45I	GTSAC	1 cut(s)	187
TspRI	CASTG	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	158
XmaJI	CCTAGG	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	2 cut(s)	290, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.