Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002116

Physical Location & Seq

Genomic Coordinates Forward (+)

8603803 .. 8606892

Gene Structure 3090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00006610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGTGGGGAAGAAGCAGAACATGATCAGCAGTCACCATTGCTCCTTGGCTTTCCTTCAACAATGGAATCCAGTGAATCTATCAAAAGAACTGGGACCATGTGGACGGCAATAGCACATATAATAACAGGAGTAATAGGGGCAGGGGTGTTATCCCTGGCCTGGAGTGTGGCTCAGCTAGGGTGGATTGCAGGTCCATTGCTCATGATAGTCTTTGCTTCAGTCACCATCGTCTCCAACAACATTCTCTCTGATTGCTACAGATACCCGGATCCATATGCCCCGACCCGAAACAGGTCCTATTTGGAAGCTGTGAAGCTGTACTTAGGAGACAAGCTGCAAACAGTGACTGCCGTATTTGTACATGAGAGCTTGTATGGCACTGGAATTGCCTATACCATTACAGCTGCTGGCAGTGTTAAGTATGAAATCCTTACCAACCCTCTCTCTGCTTTTCAGATAAATGGCTTGTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0015711 GO:0015849 GO:0016020 GO:0034220 GO:0044464 GO:0046942 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

159

Amino Acids

17.1

Weight (kDa)

5.21

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	30 - 141	3.9e-26	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	33 - 146	3.1e-07	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23810 AT5G23810 AT5G23810 AT5G23810 AT5G23810
fragaria_vesca	FvH4_3g41850 FvH4_3g41850 FvH4_3g41850
malus_domestica	MD03G1040400.v1.1 MD11G1041800.v1.1
prunus_persica	Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1
pyrus_communis	pycom03g03110 pycom03g03120 pycom08g18190 pycom11g03550 pycom11g03570 pycom11g03580
rosa_chinensis	RchiOBHm_Chr5g0075041 RchiOBHm_Chr5g0075051
rosa_laevigata	RLG00000036520 RLG00000036521
rosa_multiflora	Rmu_co8358743.1_g000001 Rmu_sc0006984.1_g000004 Rmu_sc0006984.1_g000012
rosa_roxburghii	Rroxscaffold_1G00006590 Rroxscaffold_1G00006610
rosa_rugosa	Rorug05G0435700
rosa_samantha	Rh5AG493000 Rh5AG493100 Rh5BG514300 Rh5BG514600 Rh5CG537900 Rh5CG538200 Rh5DG526600 Rh5DG526700 Rh5DG526900
rosa_wichuraiana	Rw5G045700 Rw5G045730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	473
AclWI	GGATC	2 cut(s)	266, 279
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	2 cut(s)	323, 363
AfiI	CCNNNNNNNGG	2 cut(s)	162, 294
AgsI	TTSAA	1 cut(s)	60
AjnI	CCWGG	2 cut(s)	156, 161
AluBI	AGCT	6 cut(s)	178, 311, 319, 337, 372, 407
AluI	AGCT	6 cut(s)	178, 311, 319, 337, 372, 407
Alw26I	GTCTC	2 cut(s)	238, 324
AlwI	GGATC	2 cut(s)	266, 279
AlwNI	CAGNNNCTG	2 cut(s)	350, 410
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	337, 407
AspS9I	GGNCC	3 cut(s)	96, 194, 297
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	27, 217
AvaII	GGWCC	3 cut(s)	96, 194, 297
BamHI	GGATCC	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	324, 394
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	2 cut(s)	123, 338
BciT130I	CCWGG	2 cut(s)	158, 163
BclI	TGATCA	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	2 cut(s)	238, 324
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	2 cut(s)	338, 408
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	2 cut(s)	339, 409
Bme1390I	CCNGG	3 cut(s)	158, 163, 269
Bme18I	GGWCC	3 cut(s)	96, 194, 297
BmgT120I	GGNCC	3 cut(s)	96, 194, 297
BmiI	GGNNCC	2 cut(s)	97, 273
BmrFI	CCNGG	3 cut(s)	158, 163, 269
BmrI	ACTGGG	1 cut(s)	102
BmuI	ACTGGG	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
BpmI	CTGGAG	1 cut(s)	184
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	46, 156
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 294
Bse1I	ACTGG	3 cut(s)	72, 97, 388
Bse3DI	GCAATG	2 cut(s)	38, 197
BseBI	CCWGG	2 cut(s)	158, 163
BseDI	CCNNGG	2 cut(s)	46, 156
BseLI	CCNNNNNNNGG	2 cut(s)	162, 294
BseMI	GCAATG	2 cut(s)	38, 197
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	3 cut(s)	72, 97, 388
BseXI	GCAGC	2 cut(s)	324, 394
BshFI	GGCC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	162, 294
BsmAI	GTCTC	2 cut(s)	238, 324
BsmBI	CGTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	161
Bsp1407I	TGTACA	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	25, 271
Bsp1720I	GCTNAGC	1 cut(s)	174
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	187
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	97, 273
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	2 cut(s)	266, 279
BsrDI	GCAATG	2 cut(s)	38, 197
BsrGI	TGTACA	1 cut(s)	361
BsrI	ACTGG	3 cut(s)	72, 97, 388
BssECI	CCNNGG	2 cut(s)	46, 156
BssMI	GATC	2 cut(s)	25, 271
BssT1I	CCWWGG	1 cut(s)	46
Bst2UI	CCWGG	2 cut(s)	158, 163
Bst4CI	ACNGT	1 cut(s)	346
BstAUI	TGTACA	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	2 cut(s)	174, 325
BstKTI	GATC	2 cut(s)	28, 274
BstMAI	GTCTC	2 cut(s)	238, 324
BstMBI	GATC	2 cut(s)	25, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNI	CCWGG	2 cut(s)	158, 163
BstSCI	CCNGG	3 cut(s)	156, 161, 267
BstSFI	CTRYAG	1 cut(s)	259
BstV1I	GCAGC	2 cut(s)	324, 394
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	161
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	4 cut(s)	79, 351, 381, 421
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	412
CaiI	CAGNNNCTG	2 cut(s)	350, 410
CciI	TCATGA	1 cut(s)	204
Cfr13I	GGNCC	3 cut(s)	96, 194, 297
Csp6I	GTAC	2 cut(s)	322, 362
CviAII	CATG	4 cut(s)	23, 100, 205, 365
CviQI	GTAC	2 cut(s)	322, 362
DdeI	CTNAG	2 cut(s)	174, 325
DpnI	GATC	2 cut(s)	27, 273
DpnII	GATC	2 cut(s)	25, 271
Eco130I	CCWWGG	1 cut(s)	46
Eco47I	GGWCC	3 cut(s)	96, 194, 297
Eco57I	CTGAAG	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	297
EcoRII	CCWGG	2 cut(s)	156, 161
EcoT14I	CCWWGG	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	46
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	4 cut(s)	26, 103, 208, 368
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	4 cut(s)	22, 99, 204, 364
FauNDI	CATATG	1 cut(s)	277
FbaI	TGATCA	1 cut(s)	25
FblI	GTMKAC	1 cut(s)	473
Fnu4HI	GCNGC	2 cut(s)	338, 408
Fsp4HI	GCNGC	2 cut(s)	338, 408
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	2 cut(s)	338, 408
GsuI	CTGGAG	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	1 cut(s)	269
Hin1II	CATG	4 cut(s)	26, 103, 208, 368
HinfI	GANTC	2 cut(s)	68, 77
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	2 cut(s)	27, 217
Hpy166II	GTNNAC	2 cut(s)	105, 474
Hpy188I	TCNGA	2 cut(s)	253, 459
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	2 cut(s)	105, 474
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	2 cut(s)	191, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpyF3I	CTNAG	2 cut(s)	174, 325
Hsp92II	CATG	4 cut(s)	26, 103, 208, 368
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	25, 271
LmnI	GCTCC	1 cut(s)	48
Lsp1109I	GCAGC	2 cut(s)	324, 394
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	3 cut(s)	33, 223, 346
MalI	GATC	2 cut(s)	27, 273
MboI	GATC	2 cut(s)	25, 271
MboII	GAAGA	1 cut(s)	23
MflI	RGATCY	1 cut(s)	271
MluCI	AATT	1 cut(s)	387
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	1 cut(s)	453
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	407
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	3 cut(s)	158, 163, 269
MvaI	CCWGG	2 cut(s)	158, 163
MwoI	GCNNNNNNNGC	1 cut(s)	378
NciI	CCSGG	1 cut(s)	269
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	2 cut(s)	25, 271
NlaIII	CATG	4 cut(s)	26, 103, 208, 368
NlaIV	GGNNCC	2 cut(s)	97, 273
NmuCI	GTSAC	3 cut(s)	33, 223, 346
PagI	TCATGA	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	68, 77
PkrI	GCNGC	2 cut(s)	339, 409
PpuMI	RGGWCCY	1 cut(s)	297
Psp5II	RGGWCCY	1 cut(s)	297
Psp6I	CCWGG	2 cut(s)	156, 161
PspGI	CCWGG	2 cut(s)	156, 161
PspN4I	GGNNCC	2 cut(s)	97, 273
PspPI	GGNCC	3 cut(s)	96, 194, 297
PspPPI	RGGWCCY	1 cut(s)	297
PstNI	CAGNNNCTG	2 cut(s)	350, 410
PsuI	RGATCY	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	2 cut(s)	323, 363
RsaNI	GTAC	2 cut(s)	322, 362
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	2 cut(s)	338, 408
Sau3AI	GATC	2 cut(s)	25, 271
Sau96I	GGNCC	3 cut(s)	96, 194, 297
ScrFI	CCNGG	3 cut(s)	158, 163, 269
SetI	ASST	8 cut(s)	180, 196, 299, 313, 321, 339, 374, 409
SfcI	CTRYAG	1 cut(s)	259
SinI	GGWCC	3 cut(s)	96, 194, 297
Sse9I	AATT	1 cut(s)	387
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	3 cut(s)	156, 161, 267
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	346
TasI	AATT	1 cut(s)	387
TatI	WGTACW	2 cut(s)	321, 361
TfiI	GAWTC	2 cut(s)	68, 77
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	4 cut(s)	79, 351, 388, 421
TseFI	GTSAC	3 cut(s)	33, 223, 346
TseI	GCWGC	2 cut(s)	337, 407
Tsp45I	GTSAC	3 cut(s)	33, 223, 346
TspDTI	ATGAA	1 cut(s)	441
TspRI	CASTG	4 cut(s)	79, 351, 388, 421
VpaK11BI	GGWCC	3 cut(s)	96, 194, 297
XmiI	GTMKAC	1 cut(s)	473
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.