Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002116

Physical Location & Seq

Genomic Coordinates Forward (+)

2766646 .. 2772595

Gene Structure 5950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g03570.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGTGTTGGTGAAGCAGCAGAAGATCAGCAGTTACCGTCGCTCATAAGTTCTTCATCAGGTGAACTCAACCAACCTCTCAAAAGAACTGATAGGAACTCTTCCGACTGCAATTGCACATATAATAACATAACAGGTGTGATAGGAGCAGGAGTATTATCCCTTGCATGGAGTGTGGCTCAGCTAGGGTGGATTGGAGGTCCATTGCTTATGATTGTATTTGCTTCAGTCACCATTCTTTCCACCAACCTCCTCTCCGACTGCTACCGGTACCCCGAATCCAATAGCCCGATGAGGGTCGGATCCTACTTAGAAGCTGTTAAGGTCTACCTAGGAGAGAAGAGTCAGACAGTGTGTGCAATATTTGCACAGGAGAGCCTGTATGGCACCGGAATTGCCTACGTTATTACAGCTGCTGGCAGCGTCAAGCCTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0015711 GO:0015849 GO:0016020 GO:0034220 GO:0044464 GO:0046942 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

146

Amino Acids

15.33

Weight (kDa)

4.76

Isoelectric Point (pI)

28.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23810 AT5G23810 AT5G23810 AT5G23810 AT5G23810
fragaria_vesca	FvH4_3g41850 FvH4_3g41850 FvH4_3g41850
malus_domestica	MD03G1040400.v1.1 MD11G1041800.v1.1
prunus_persica	Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1
pyrus_communis	pycom03g03110 pycom03g03120 pycom08g18190 pycom11g03550 pycom11g03570 pycom11g03580
rosa_chinensis	RchiOBHm_Chr5g0075041 RchiOBHm_Chr5g0075051
rosa_laevigata	RLG00000036520 RLG00000036521
rosa_multiflora	Rmu_co8358743.1_g000001 Rmu_sc0006984.1_g000004 Rmu_sc0006984.1_g000012
rosa_roxburghii	Rroxscaffold_1G00006590 Rroxscaffold_1G00006610
rosa_rugosa	Rorug05G0435700
rosa_samantha	Rh5AG493000 Rh5AG493100 Rh5BG514300 Rh5BG514600 Rh5CG537900 Rh5CG538200 Rh5DG526600 Rh5DG526700 Rh5DG526900
rosa_wichuraiana	Rw5G045700 Rw5G045730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	270
AccB1I	GGYRCC	2 cut(s)	270, 386
AccI	GTMKAC	1 cut(s)	327
AclWI	GGATC	2 cut(s)	297, 310
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	168, 295
AgeI	ACCGGT	1 cut(s)	267
AluBI	AGCT	3 cut(s)	184, 317, 413
AluI	AGCT	3 cut(s)	184, 317, 413
AlwI	GGATC	2 cut(s)	297, 310
AlwNI	CAGNNNCTG	1 cut(s)	416
ApeKI	GCWGC	3 cut(s)	17, 413, 420
AsiGI	ACCGGT	1 cut(s)	267
Asp718I	GGTACC	1 cut(s)	270
AspA2I	CCTAGG	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	23, 74, 223
AvaII	GGWCC	1 cut(s)	200
AvrII	CCTAGG	1 cut(s)	331
BamHI	GGATCC	1 cut(s)	302
BanI	GGYRCC	2 cut(s)	270, 386
BbvI	GCAGC	3 cut(s)	29, 400, 432
BfaI	CTAG	2 cut(s)	185, 332
BglI	GCCNNNNNGGC	1 cut(s)	384
BisI	GCNGC	3 cut(s)	18, 414, 421
BlnI	CCTAGG	1 cut(s)	331
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	3 cut(s)	19, 415, 422
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	3 cut(s)	272, 304, 388
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
Bpu1102I	GCTNAGC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	2 cut(s)	267, 389
BsaXI	ACNNNNNCTCC	6 cut(s)	138, 168, 239, 269, 365, 395
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 295
Bse118I	RCCGGY	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	331
BseLI	CCNNNNNNNGG	2 cut(s)	168, 295
BseMI	GCAATG	1 cut(s)	203
BseMII	CTCAG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	3 cut(s)	29, 400, 432
BshNI	GGYRCC	2 cut(s)	270, 386
BshTI	ACCGGT	1 cut(s)	267
BsiSI	CCGG	2 cut(s)	268, 390
BslI	CCNNNNNNNGG	2 cut(s)	168, 295
Bsp143I	GATC	2 cut(s)	25, 302
Bsp1720I	GCTNAGC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	3 cut(s)	272, 304, 388
BspPI	GGATC	2 cut(s)	297, 310
BspT107I	GGYRCC	2 cut(s)	270, 386
BsrDI	GCAATG	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	2 cut(s)	25, 302
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	39, 352
Bst6I	CTCTTC	2 cut(s)	106, 335
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	2 cut(s)	180, 310
BstKTI	GATC	2 cut(s)	28, 305
BstMBI	GATC	2 cut(s)	25, 302
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 384
BstV1I	GCAGC	3 cut(s)	29, 400, 432
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	418
CaiI	CAGNNNCTG	1 cut(s)	416
Cfr10I	RCCGGY	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	1 cut(s)	412
Csp6I	GTAC	1 cut(s)	271
CspAI	ACCGGT	1 cut(s)	267
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	7 cut(s)	179, 184, 288, 317, 378, 413, 430
CviKI_1	RGCY	7 cut(s)	179, 184, 288, 317, 378, 413, 430
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	180, 310
DpnI	GATC	2 cut(s)	27, 304
DpnII	GATC	2 cut(s)	25, 302
Eam1104I	CTCTTC	2 cut(s)	106, 335
EarI	CTCTTC	2 cut(s)	106, 335
Eco130I	CCWWGG	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	1 cut(s)	171
FaiI	YATR	9 cut(s)	47, 121, 123, 131, 169, 212, 384, 434, 436
FatI	CATG	1 cut(s)	167
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	3 cut(s)	18, 414, 421
Fsp4HI	GCNGC	3 cut(s)	18, 414, 421
FspBI	CTAG	2 cut(s)	185, 332
GluI	GCNGC	3 cut(s)	18, 414, 421
HapII	CCGG	2 cut(s)	268, 390
HgaI	GACGC	1 cut(s)	412
Hin1II	CATG	1 cut(s)	171
HinfI	GANTC	2 cut(s)	278, 343
HpaII	CCGG	2 cut(s)	268, 390
HphI	GGTGA	3 cut(s)	23, 74, 223
Hpy166II	GTNNAC	2 cut(s)	65, 328
Hpy188I	TCNGA	4 cut(s)	106, 259, 302, 348
Hpy8I	GTNNAC	2 cut(s)	65, 328
Hpy99I	CGWCG	1 cut(s)	43
HpyCH4III	ACNGT	2 cut(s)	39, 352
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	5 cut(s)	111, 117, 167, 359, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 384
HpyF3I	CTNAG	2 cut(s)	180, 310
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	1 cut(s)	171
KpnI	GGTACC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	25, 302
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	8 cut(s)	45, 120, 135, 281, 356, 392, 402, 403
Lsp1109I	GCAGC	3 cut(s)	29, 400, 432
MaeI	CTAG	2 cut(s)	185, 332
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	2 cut(s)	33, 229
MalI	GATC	2 cut(s)	27, 304
MboI	GATC	2 cut(s)	25, 302
MboII	GAAGA	4 cut(s)	35, 45, 93, 352
MfeI	CAATTG	1 cut(s)	112
MflI	RGATCY	1 cut(s)	302
MluCI	AATT	2 cut(s)	112, 393
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	3 cut(s)	129, 280, 282
MnlI	CCTC	5 cut(s)	87, 191, 260, 263, 288
MseI	TTAA	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	2 cut(s)	268, 390
MunI	CAATTG	1 cut(s)	112
MwoI	GCNNNNNNNGC	2 cut(s)	365, 384
NdeII	GATC	2 cut(s)	25, 302
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	3 cut(s)	272, 304, 388
NmuCI	GTSAC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	278
PinAI	ACCGGT	1 cut(s)	267
PkrI	GCNGC	3 cut(s)	19, 415, 422
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
PspN4I	GGNNCC	3 cut(s)	272, 304, 388
PspPI	GGNCC	1 cut(s)	200
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	3 cut(s)	18, 414, 421
Sau3AI	GATC	2 cut(s)	25, 302
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	1 cut(s)	352
SinI	GGWCC	1 cut(s)	200
Sse9I	AATT	2 cut(s)	112, 393
SspI	AATATT	1 cut(s)	363
SspMI	CTAG	2 cut(s)	185, 332
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	39, 352
TaiI	ACGT	1 cut(s)	405
TasI	AATT	2 cut(s)	112, 393
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	1 cut(s)	357
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	3 cut(s)	17, 413, 420
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	45
TspRI	CASTG	1 cut(s)	357
VpaK11BI	GGWCC	1 cut(s)	200
XmaJI	CCTAGG	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	327
XspI	CTAG	2 cut(s)	185, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.