Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8358743.1

Orthogroup ID

OG0002116

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1034

Gene Structure 1033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8358743.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgcattcagctaggacgtgggtgactgctagtgcacatatcataactgctgtgattggttccggtgtgctatctctggcatgggcgatatctcagttgggttgggttgccggaccggttgttctcatgctcttctccttcatcacttacttcacctccaccctgctcgccgactcttacagatctccggaccctgtctccggcaagagaaactacacctacatggatgtcgtacgagcaaatctaggaggcagaaaagttcagctatgtgggttggctcagtatggtaatctcataggtgttaccatcggttacacaatcactgcatccatcagcatggtggcggtgaagaggtcgaattgtttccacaaacatggtcatcatgtgaagtgccacacgtcgaataacccattcatgataatatttgcttgcttccaaatcttgctcagccaaataccaaacttccataagctctcatggctctccatcctcgcagccatcatgtcgtttgcctactcttccattggccttggcctttcagtagccaaagtcatagaaggaccacctgcaaggacaaccttaactgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001504 GO:0001505 GO:0003333 GO:0003674 GO:0005215 GO:0005310 GO:0005313 GO:0005326 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015171 GO:0015172 GO:0015175 GO:0015179 GO:0015180 GO:0015186 GO:0015193 GO:0015194 GO:0015238 GO:0015318 GO:0015711 GO:0015740 GO:0015800 GO:0015801 GO:0015804 GO:0015807 GO:0015808 GO:0015810 GO:0015813 GO:0015824 GO:0015825 GO:0015827 GO:0015849 GO:0015893 GO:0016020 GO:0022857 GO:0022858 GO:0022889 GO:0032328 GO:0032329 GO:0034220 GO:0035524 GO:0042221 GO:0042493 GO:0043090 GO:0043207 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051938 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

196

Amino Acids

21.21

Weight (kDa)

9.81

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23810 AT5G23810 AT5G23810 AT5G23810 AT5G23810
fragaria_vesca	FvH4_3g41850 FvH4_3g41850 FvH4_3g41850
malus_domestica	MD03G1040400.v1.1 MD11G1041800.v1.1
prunus_persica	Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1
pyrus_communis	pycom03g03110 pycom03g03120 pycom08g18190 pycom11g03550 pycom11g03570 pycom11g03580
rosa_chinensis	RchiOBHm_Chr5g0075041 RchiOBHm_Chr5g0075051
rosa_laevigata	RLG00000036520 RLG00000036521
rosa_multiflora	Rmu_co8358743.1_g000001 Rmu_sc0006984.1_g000004 Rmu_sc0006984.1_g000012
rosa_roxburghii	Rroxscaffold_1G00006590 Rroxscaffold_1G00006610
rosa_rugosa	Rorug05G0435700
rosa_samantha	Rh5AG493000 Rh5AG493100 Rh5BG514300 Rh5BG514600 Rh5CG537900 Rh5CG538200 Rh5DG526600 Rh5DG526700 Rh5DG526900
rosa_wichuraiana	Rw5G045700 Rw5G045730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	574
Acc36I	ACCTGC	1 cut(s)	574
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	1 cut(s)	344
AfaI	GTAC	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	396
AgeI	ACCGGT	1 cut(s)	115
AjiI	CACGTC	2 cut(s)	18, 399
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	3 cut(s)	11, 265, 472
AluI	AGCT	3 cut(s)	11, 265, 472
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	202
Alw44I	GTGCAC	1 cut(s)	33
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	2 cut(s)	526, 532
ApaLI	GTGCAC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	494
AsiGI	ACCGGT	1 cut(s)	115
Asp700I	GAANNNNTTC	1 cut(s)	362
AspS9I	GGNCC	3 cut(s)	113, 190, 560
AsuHPI	GGTGA	3 cut(s)	34, 145, 358
AvaII	GGWCC	3 cut(s)	113, 190, 560
BaeGI	GKGCMC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	506
BccI	CCATC	4 cut(s)	314, 338, 494, 506
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	3 cut(s)	12, 30, 245
BfuAI	ACCTGC	1 cut(s)	574
BglII	AGATCT	1 cut(s)	182
BisI	GCNGC	1 cut(s)	495
BlpI	GCTNAGC	1 cut(s)	446
BlsI	GCNGC	1 cut(s)	496
Bme18I	GGWCC	3 cut(s)	113, 190, 560
BmgBI	CACGTC	2 cut(s)	18, 399
BmgT120I	GGNCC	3 cut(s)	113, 190, 560
BmiI	GGNNCC	2 cut(s)	61, 192
BmsI	GCATC	1 cut(s)	335
Bpu1102I	GCTNAGC	1 cut(s)	446
BsaJI	CCNNGG	1 cut(s)	529
BsaWI	WCCGGW	3 cut(s)	62, 115, 187
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 182, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse118I	RCCGGY	1 cut(s)	115
BseAI	TCCGGA	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	529
BseGI	GGATG	3 cut(s)	232, 326, 486
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	3 cut(s)	107, 293, 460
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	506
BshFI	GGCC	2 cut(s)	528, 534
BshTI	ACCGGT	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	5 cut(s)	63, 111, 116, 188, 201
BsiWI	CGTACG	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	202
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	2 cut(s)	528, 534
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	182
Bsp1720I	GCTNAGC	1 cut(s)	446
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	2 cut(s)	528, 534
BspCNI	CTCAG	3 cut(s)	106, 292, 459
BspEI	TCCGGA	1 cut(s)	187
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	61, 192
BspMI	ACCTGC	1 cut(s)	574
BspQI	GCTCTTC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	529
Bst6I	CTCTTC	3 cut(s)	137, 344, 523
BstC8I	GCNNGC	2 cut(s)	168, 430
BstDEI	CTNAG	3 cut(s)	93, 279, 446
BstF5I	GGATG	3 cut(s)	232, 326, 486
BstKTI	GATC	1 cut(s)	185
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	478
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	506
BstX2I	RGATCY	1 cut(s)	182
BstXI	CCANNNNNNTGG	2 cut(s)	337, 374
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	528, 534
BtrI	CACGTC	2 cut(s)	18, 399
BtsCI	GGATG	3 cut(s)	232, 326, 486
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	321
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	2 cut(s)	168, 430
CciI	TCATGA	1 cut(s)	414
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	3 cut(s)	113, 190, 560
CpoI	CGGWCCG	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	233
CspAI	ACCGGT	1 cut(s)	115
CspI	CGGWCCG	1 cut(s)	113
CviAII	CATG	9 cut(s)	81, 127, 223, 337, 374, 383, 415, 477, 502
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	3 cut(s)	93, 279, 446
DpnI	GATC	1 cut(s)	184
DpnII	GATC	1 cut(s)	182
Eam1104I	CTCTTC	3 cut(s)	137, 344, 523
EarI	CTCTTC	3 cut(s)	137, 344, 523
Eco130I	CCWWGG	1 cut(s)	529
Eco32I	GATATC	1 cut(s)	90
Eco47I	GGWCC	3 cut(s)	113, 190, 560
EcoRV	GATATC	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	529
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	529
FaeI	CATG	9 cut(s)	84, 130, 226, 340, 377, 386, 418, 480, 505
FatI	CATG	9 cut(s)	80, 126, 222, 336, 373, 382, 414, 476, 501
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	3 cut(s)	239, 313, 473
Fsp4HI	GCNGC	1 cut(s)	495
FspBI	CTAG	3 cut(s)	12, 30, 245
GluI	GCNGC	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	528, 534
HapII	CCGG	5 cut(s)	63, 111, 116, 188, 201
Hin1II	CATG	9 cut(s)	84, 130, 226, 340, 377, 386, 418, 480, 505
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	5 cut(s)	63, 111, 116, 188, 201
HphI	GGTGA	3 cut(s)	34, 145, 358
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188III	TCNNGA	2 cut(s)	188, 415
Hpy8I	GTNNAC	1 cut(s)	35
Hpy99I	CGWCG	1 cut(s)	403
HpyAV	CCTTC	2 cut(s)	148, 551
HpyCH4IV	ACGT	2 cut(s)	17, 398
HpyCH4V	TGCA	4 cut(s)	4, 35, 326, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	478
HpyF3I	CTNAG	3 cut(s)	93, 279, 446
HpySE526I	ACGT	2 cut(s)	17, 398
Hsp92II	CATG	9 cut(s)	84, 130, 226, 340, 377, 386, 418, 480, 505
Kpn2I	TCCGGA	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	182
LguI	GCTCTTC	1 cut(s)	137
Lsp1109I	GCAGC	1 cut(s)	506
LweI	GCATC	1 cut(s)	335
MaeI	CTAG	3 cut(s)	12, 30, 245
MaeII	ACGT	2 cut(s)	17, 398
MaeIII	GTNAC	3 cut(s)	22, 301, 311
MalI	GATC	1 cut(s)	184
MboI	GATC	1 cut(s)	182
MboII	GAAGA	3 cut(s)	124, 361, 510
MflI	RGATCY	1 cut(s)	182
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	1 cut(s)	358
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	4 cut(s)	166, 242, 345, 500
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	362
MseI	TTAA	1 cut(s)	581
MslI	CAYNNNNRTG	3 cut(s)	221, 335, 372
MspI	CCGG	5 cut(s)	63, 111, 116, 188, 201
Mva1269I	GAATGC	1 cut(s)	4
MwoI	GCNNNNNNNGC	1 cut(s)	478
NdeII	GATC	1 cut(s)	182
NlaIII	CATG	9 cut(s)	84, 130, 226, 340, 377, 386, 418, 480, 505
NlaIV	GGNNCC	2 cut(s)	61, 192
NmuCI	GTSAC	1 cut(s)	22
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	414
PaqCI	CACCTGC	1 cut(s)	574
PciSI	GCTCTTC	1 cut(s)	137
PctI	GAATGC	1 cut(s)	4
PdmI	GAANNNNTTC	1 cut(s)	362
Pfl23II	CGTACG	1 cut(s)	232
PflFI	GACNNNGTC	1 cut(s)	194
PinAI	ACCGGT	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	496
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PspLI	CGTACG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	61, 192
PspPI	GGNCC	3 cut(s)	113, 190, 560
PsuI	RGATCY	1 cut(s)	182
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
RseI	CAYNNNNRTG	3 cut(s)	221, 335, 372
Rsr2I	CGGWCCG	1 cut(s)	113
RsrII	CGGWCCG	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	581
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	1 cut(s)	182
Sau96I	GGNCC	3 cut(s)	113, 190, 560
SchI	GAGTC	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	37
SfaNI	GCATC	1 cut(s)	335
SinI	GGWCC	3 cut(s)	113, 190, 560
SmiMI	CAYNNNNRTG	3 cut(s)	221, 335, 372
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	1 cut(s)	344
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	3 cut(s)	12, 30, 245
StyI	CCWWGG	1 cut(s)	529
TaiI	ACGT	2 cut(s)	20, 401
TaqI	TCGA	2 cut(s)	356, 401
TasI	AATT	1 cut(s)	358
Tru1I	TTAA	1 cut(s)	581
Tru9I	TTAA	1 cut(s)	581
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	2 cut(s)	130, 403
TspRI	CASTG	1 cut(s)	328
Tth111I	GACNNNGTC	1 cut(s)	194
VneI	GTGCAC	1 cut(s)	33
VpaK11BI	GGWCC	3 cut(s)	113, 190, 560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	3 cut(s)	12, 30, 245
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.