Rh5BG514600

Amino acid permease

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
81567929 .. 81572893
4965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG514600.1

Sequence Viewer

Length: 1404 bp
ATGGGTGGGGAAGAAGCAGAACAACATGAACAGCAGTCACCATTGCTCCTTGGCTTTCCTTCAACAATGGAACCCAGTGAATCTATCAAAAGAACTGGGACCATATGGTCGGCAATGGCACATATAATAACAGGTGTGATAGGGGCAGGGGTGTTGTCCCTGGCCTGGAGTGTGGCTCAGCTAGGGTGGATTGCCGGTCCATTGCTGATGATAGTCTTTGCTTTGGTCACCATTGTCTCCAACAACATCCTCTCCGACTGCTACAGATACCCAGATCCAAATTCCCCGACCCGAAACAGGTCCTATTTGGAAGCTGTGAAGTTGTACTTAGGAGAAAAGCCGCAAACAGTGTCTGCCGTATTTGTACATGAGAGCTTGTATGGCACTGGAATTGCCTATACGATTACAGCTGCTGGCAGTGTCAAAGCGATTCTGAAGTCAAACTGTTATCACAAGGAAGGGCATCAGGCTTCATGTACATATGGGGATACTCTGTATATGCTGATATTTGGAGCCGTACAGATTGTTGTGTCACAAATACCAGATTTCCATAACATGAAATGGCTTTCGGTTATTGCAGCAATCATGTCCTTTGCCTACTCTTTTATTGGACTTGGCCTCGGCTTTGCCAAAGTAATAGAAAATGGGAGTATTAAAGGGAGCTTGTCAGGAATTGCAGCCTCTAGTTTTGCTGATAAATTATGGTTAATCTTCCAAGCACTTGGGGACATTGCTTTTGCCTATCCATACTCTATTATTGTTTTTGAGATTCAGGATACGTTAAAGTCCCCTCCAGCGGAAAATCACACAATGAAGAGGGCCTCTGTGATTGCCATCTTTGTCACAACCTTATTCTACCTCTGCTGCGGTTGCTTTGGATATGCAGCCTTTGGGGATGACACGCCGGGGAATCTCTTGACTGGATTTGGGTTTTACGAGCCTTACTGGCTCATTGATTTTGCTAATGCTTGCATAGTTCTTCATTTGGTTGGAGGATATCAGATCTTTAGTCAGCCAGTATTTGCAGTTGCTGAGAGATGGTTTAGCAAGAAGTATCCAAACAGTGCATTTGTGAACAACTTTTACGGCTTCAAAATCCCAATGTTTCCGAGATTTCAAGTGAATCCCTTCAGGCTATGTTTCCGGACTGTTTATGTCATTTCAACTACAATAATCGCAATCCTCTTTCCTTATTTCAACCAAGTTTTGGGAGTGCTAGGCGCCTTGAACTTTTGGCCTTTGACTATATATTTTCCTGTAGAGATGTACTTTGTACAAAAGAAAATTGGGACATGGACCAAGAAATGGATACTATTACAGGCATTCAGTTTTGTTTGCTTTCTTGTGACAGTTGTGGGTGTCGTTGGATCAGTTGAAGGACTTATAAGTGCCAAACTTAGCTAG

Protein Analysis

467

Amino Acids

51.58

Weight (kDa)

7.98

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 31 - 462 9e-101 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 34 - 203 1.7e-07 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1385
AasI GACNNNNNNGTC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 1220
AccB7I CCANNNNNTGG 2 cut(s) 1207, 1305
AccIII TCCGGA 1 cut(s) 1143
AciI CCGC 3 cut(s) 341, 797, 867
AclWI GGATC 2 cut(s) 269, 1375
AcsI RAATTY 1 cut(s) 280
AcuI CTGAAG 2 cut(s) 455, 1114
AcyI GRCGYC 1 cut(s) 1221
AfaI GTAC 6 cut(s) 326, 366, 478, 519, 1268, 1275
AfiI CCNNNNNNNGG 5 cut(s) 165, 297, 796, 1207, 1305
AgsI TTSAA 7 cut(s) 63, 1093, 1118, 1164, 1198, 1228, 1376
AjnI CCWGG 2 cut(s) 159, 164
AluBI AGCT 6 cut(s) 181, 314, 375, 410, 663, 1401
AluI AGCT 6 cut(s) 181, 314, 375, 410, 663, 1401
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 2 cut(s) 269, 1375
AlwNI CAGNNNCTG 3 cut(s) 353, 413, 1031
Aor13HI TCCGGA 1 cut(s) 1143
AoxI GGCC 4 cut(s) 162, 616, 819, 1235
ApeKI GCWGC 5 cut(s) 410, 578, 677, 864, 884
ApoI RAATTY 1 cut(s) 280
ArsI GACNNNNNNTTYG 2 cut(s) 719, 751
Asp700I GAANNNNTTC 1 cut(s) 1127
AspLEI GCGC 1 cut(s) 1223
AspS9I GGNCC 5 cut(s) 99, 197, 300, 819, 1296
AsuC2I CCSGG 1 cut(s) 906
AsuHPI GGTGA 2 cut(s) 30, 220
AvaII GGWCC 4 cut(s) 99, 197, 300, 1296
BanI GGYRCC 1 cut(s) 1220
BbvI GCAGC 5 cut(s) 397, 590, 689, 851, 896
BccI CCATC 2 cut(s) 842, 1032
BceAI ACGGC 3 cut(s) 341, 500, 1102
BciT130I CCWGG 2 cut(s) 161, 166
BciVI GTATCC 4 cut(s) 481, 769, 1065, 1302
BcnI CCSGG 1 cut(s) 906
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 4 cut(s) 182, 684, 1217, 1402
BfmI CTRYAG 2 cut(s) 262, 1257
BfoI RGCGCY 1 cut(s) 1224
BfuI GTATCC 4 cut(s) 481, 769, 1065, 1302
BglI GCCNNNNNGGC 1 cut(s) 946
BglII AGATCT 1 cut(s) 1002
BisI GCNGC 6 cut(s) 341, 411, 579, 678, 865, 885
BlpI GCTNAGC 1 cut(s) 177
BlsI GCNGC 6 cut(s) 342, 412, 580, 679, 866, 886
Bme1390I CCNGG 3 cut(s) 161, 166, 906
Bme18I GGWCC 4 cut(s) 99, 197, 300, 1296
BmgT120I GGNCC 5 cut(s) 99, 197, 300, 819, 1296
BmiI GGNNCC 4 cut(s) 72, 100, 514, 1222
BmrFI CCNGG 3 cut(s) 161, 166, 906
BmrI ACTGGG 2 cut(s) 69, 105
BmsI GCATC 1 cut(s) 472
BmuI ACTGGG 2 cut(s) 69, 105
BplI GAGNNNNNCTC 2 cut(s) 160, 192
BpmI CTGGAG 2 cut(s) 187, 777
Bpu1102I GCTNAGC 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 906
BsaBI GATNNNNATC 1 cut(s) 833
BsaHI GRCGYC 1 cut(s) 1221
BsaJI CCNNGG 4 cut(s) 49, 159, 619, 905
BsaWI WCCGGW 1 cut(s) 1143
BsaXI ACNNNNNCTCC 4 cut(s) 30, 60, 236, 266
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 297, 796, 1207, 1305
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 6 cut(s) 75, 100, 391, 925, 950, 1016
Bse3DI GCAATG 4 cut(s) 41, 120, 200, 729
Bse8I GATNNNNATC 1 cut(s) 833
BseAI TCCGGA 1 cut(s) 1143
BseBI CCWGG 2 cut(s) 161, 166
BseDI CCNNGG 4 cut(s) 49, 159, 619, 905
BseGI GGATG 2 cut(s) 246, 901
BseJI GATNNNNATC 1 cut(s) 833
BseLI CCNNNNNNNGG 5 cut(s) 165, 297, 796, 1207, 1305
BseMI GCAATG 4 cut(s) 41, 120, 200, 729
BseMII CTCAG 2 cut(s) 191, 1023
BseNI ACTGG 6 cut(s) 75, 100, 391, 925, 950, 1016
BseXI GCAGC 5 cut(s) 397, 590, 689, 851, 896
BshFI GGCC 4 cut(s) 164, 618, 821, 1237
BshNI GGYRCC 1 cut(s) 1220
BsiSI CCGG 3 cut(s) 195, 905, 1144
BslFI GGGAC 5 cut(s) 112, 142, 740, 772, 1303
BslI CCNNNNNNNGG 5 cut(s) 165, 297, 796, 1207, 1305
BsmAI GTCTC 1 cut(s) 241
BsmFI GGGAC 5 cut(s) 112, 142, 740, 772, 1303
BsmI GAATGC 1 cut(s) 1322
BsnI GGCC 4 cut(s) 164, 618, 821, 1237
Bsp13I TCCGGA 1 cut(s) 1143
Bsp1407I TGTACA 3 cut(s) 364, 476, 1273
Bsp143I GATC 3 cut(s) 274, 1002, 1367
Bsp1720I GCTNAGC 1 cut(s) 177
BspACI CCGC 3 cut(s) 341, 797, 867
BspANI GGCC 4 cut(s) 164, 618, 821, 1237
BspCNI CTCAG 2 cut(s) 190, 1024
BspEI TCCGGA 1 cut(s) 1143
BspLI GGNNCC 4 cut(s) 72, 100, 514, 1222
BspPI GGATC 2 cut(s) 269, 1375
BspT107I GGYRCC 1 cut(s) 1220
BsrDI GCAATG 4 cut(s) 41, 120, 200, 729
BsrFI RCCGGY 1 cut(s) 194
BsrGI TGTACA 3 cut(s) 364, 476, 1273
BsrI ACTGG 6 cut(s) 75, 100, 391, 925, 950, 1016
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 4 cut(s) 49, 159, 619, 905
BssMI GATC 3 cut(s) 274, 1002, 1367
BssNI GRCGYC 1 cut(s) 1221
BssT1I CCWWGG 1 cut(s) 49
Bst2UI CCWGG 2 cut(s) 161, 166
Bst4CI ACNGT 5 cut(s) 349, 446, 1064, 1150, 1351
Bst6I CTCTTC 1 cut(s) 809
BstACI GRCGYC 1 cut(s) 1221
BstAUI TGTACA 3 cut(s) 364, 476, 1273
BstC8I GCNNGC 2 cut(s) 415, 970
BstDEI CTNAG 4 cut(s) 177, 328, 1032, 1397
BstEII GGTNACC 1 cut(s) 226
BstF5I GGATG 2 cut(s) 246, 901
BstH2I RGCGCY 1 cut(s) 1224
BstHHI GCGC 1 cut(s) 1223
BstKTI GATC 3 cut(s) 277, 1005, 1370
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 3 cut(s) 274, 1002, 1367
BstMWI GCNNNNNNNGC 3 cut(s) 381, 870, 946
BstNI CCWGG 2 cut(s) 161, 166
BstPI GGTNACC 1 cut(s) 226
BstSCI CCNGG 3 cut(s) 159, 164, 904
BstSFI CTRYAG 2 cut(s) 262, 1257
BstV1I GCAGC 5 cut(s) 397, 590, 689, 851, 896
BstX2I RGATCY 2 cut(s) 274, 1002
BstXI CCANNNNNNTGG 1 cut(s) 722
BstYI RGATCY 2 cut(s) 274, 1002
BsuI GTATCC 4 cut(s) 481, 769, 1065, 1302
BsuRI GGCC 4 cut(s) 164, 618, 821, 1237
BtsCI GGATG 2 cut(s) 246, 901
BtsI GCAGTG 1 cut(s) 424
BtsIMutI CAGTG 5 cut(s) 82, 354, 384, 424, 1069
Cac8I GCNNGC 2 cut(s) 415, 970
CaiI CAGNNNCTG 3 cut(s) 353, 413, 1031
CfoI GCGC 1 cut(s) 1223
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 5 cut(s) 99, 197, 300, 819, 1296
Csp6I GTAC 6 cut(s) 325, 365, 477, 518, 1267, 1274
CviAII CATG 6 cut(s) 26, 368, 474, 556, 586, 1293
CviQI GTAC 6 cut(s) 325, 365, 477, 518, 1267, 1274
DdeI CTNAG 4 cut(s) 177, 328, 1032, 1397
DinI GGCGCC 1 cut(s) 1222
DpnI GATC 3 cut(s) 276, 1004, 1369
DpnII GATC 3 cut(s) 274, 1002, 1367
DrdI GACNNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 809
EarI CTCTTC 1 cut(s) 809
Eco130I CCWWGG 1 cut(s) 49
Eco32I GATATC 1 cut(s) 998
Eco47I GGWCC 4 cut(s) 99, 197, 300, 1296
Eco57I CTGAAG 2 cut(s) 455, 1114
Eco91I GGTNACC 1 cut(s) 226
EcoO109I RGGNCCY 2 cut(s) 300, 819
EcoO65I GGTNACC 1 cut(s) 226
EcoRII CCWGG 2 cut(s) 159, 164
EcoRV GATATC 1 cut(s) 998
EcoT14I CCWWGG 1 cut(s) 49
EgeI GGCGCC 1 cut(s) 1222
EheI GGCGCC 1 cut(s) 1222
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 6 cut(s) 29, 371, 477, 559, 589, 1296
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 5 cut(s) 112, 142, 740, 772, 1303
FatI CATG 6 cut(s) 25, 367, 473, 555, 585, 1292
FauNDI CATATG 2 cut(s) 104, 481
Fnu4HI GCNGC 6 cut(s) 341, 411, 579, 678, 865, 885
FokI GGATG 2 cut(s) 233, 908
Fsp4HI GCNGC 6 cut(s) 341, 411, 579, 678, 865, 885
FspBI CTAG 4 cut(s) 182, 684, 1217, 1402
GlaI GCGC 1 cut(s) 1222
GluI GCNGC 6 cut(s) 341, 411, 579, 678, 865, 885
GsuI CTGGAG 2 cut(s) 187, 777
HaeII RGCGCY 1 cut(s) 1224
HaeIII GGCC 4 cut(s) 164, 618, 821, 1237
HapII CCGG 3 cut(s) 195, 905, 1144
HhaI GCGC 1 cut(s) 1223
Hin1I GRCGYC 1 cut(s) 1221
Hin1II CATG 6 cut(s) 29, 371, 477, 559, 589, 1296
Hin6I GCGC 1 cut(s) 1221
HinP1I GCGC 1 cut(s) 1221
HinfI GANTC 5 cut(s) 80, 430, 769, 910, 1123
HpaII CCGG 3 cut(s) 195, 905, 1144
HphI GGTGA 2 cut(s) 30, 220
Hpy166II GTNNAC 1 cut(s) 1075
Hpy188I TCNGA 4 cut(s) 256, 435, 1002, 1110
Hpy188III TCNNGA 4 cut(s) 669, 773, 916, 1144
Hpy8I GTNNAC 1 cut(s) 1075
HpyAV CCTTC 4 cut(s) 69, 452, 1138, 1370
HpyCH4III ACNGT 5 cut(s) 349, 446, 1064, 1150, 1351
HpyCH4IV ACGT 1 cut(s) 779
HpyCH4V TGCA 6 cut(s) 578, 677, 884, 972, 1025, 1067
HpyF10VI GCNNNNNNNGC 3 cut(s) 381, 870, 946
HpyF3I CTNAG 4 cut(s) 177, 328, 1032, 1397
HpySE526I ACGT 1 cut(s) 779
Hsp92I GRCGYC 1 cut(s) 1221
Hsp92II CATG 6 cut(s) 29, 371, 477, 559, 589, 1296
HspAI GCGC 1 cut(s) 1221
KasI GGCGCC 1 cut(s) 1220
Kpn2I TCCGGA 1 cut(s) 1143
Kzo9I GATC 3 cut(s) 274, 1002, 1367
LmnI GCTCC 3 cut(s) 51, 512, 660
Lsp1109I GCAGC 5 cut(s) 397, 590, 689, 851, 896
LweI GCATC 1 cut(s) 472
MaeI CTAG 4 cut(s) 182, 684, 1217, 1402
MaeII ACGT 1 cut(s) 779
MaeIII GTNAC 5 cut(s) 36, 226, 531, 841, 1345
MalI GATC 3 cut(s) 276, 1004, 1369
MboI GATC 3 cut(s) 274, 1002, 1367
MboII GAAGA 4 cut(s) 23, 703, 826, 971
MflI RGATCY 2 cut(s) 274, 1002
MluCI AATT 5 cut(s) 280, 390, 672, 698, 1284
Mly113I GGCGCC 1 cut(s) 1221
MmeI TCCRAC 4 cut(s) 264, 279, 970, 1345
MnlI CCTC 9 cut(s) 260, 629, 691, 801, 810, 832, 869, 986, 1193
MroI TCCGGA 1 cut(s) 1143
MroXI GAANNNNTTC 1 cut(s) 1127
MseI TTAA 3 cut(s) 654, 707, 782
MspA1I CMGCKG 2 cut(s) 410, 797
MspI CCGG 3 cut(s) 195, 905, 1144
MspR9I CCNGG 3 cut(s) 161, 166, 906
Mva1269I GAATGC 1 cut(s) 1322
MvaI CCWGG 2 cut(s) 161, 166
MwoI GCNNNNNNNGC 3 cut(s) 381, 870, 946
NarI GGCGCC 1 cut(s) 1221
NciI CCSGG 1 cut(s) 906
NdeI CATATG 2 cut(s) 104, 481
NdeII GATC 3 cut(s) 274, 1002, 1367
NlaIII CATG 6 cut(s) 29, 371, 477, 559, 589, 1296
NlaIV GGNNCC 4 cut(s) 72, 100, 514, 1222
NmeAIII GCCGAG 1 cut(s) 600
NmuCI GTSAC 5 cut(s) 36, 226, 531, 841, 1345
PctI GAATGC 1 cut(s) 1322
PdmI GAANNNNTTC 1 cut(s) 1127
PfeI GAWTC 5 cut(s) 80, 430, 769, 910, 1123
PflMI CCANNNNNTGG 2 cut(s) 1207, 1305
PkrI GCNGC 6 cut(s) 342, 412, 580, 679, 866, 886
PluTI GGCGCC 1 cut(s) 1224
PpuMI RGGWCCY 1 cut(s) 300
PsiI TTATAA 1 cut(s) 1385
Psp5II RGGWCCY 1 cut(s) 300
Psp6I CCWGG 2 cut(s) 159, 164
PspEI GGTNACC 1 cut(s) 226
PspGI CCWGG 2 cut(s) 159, 164
PspN4I GGNNCC 4 cut(s) 72, 100, 514, 1222
PspPI GGNCC 5 cut(s) 99, 197, 300, 819, 1296
PspPPI RGGWCCY 1 cut(s) 300
PsrI GAACNNNNNNTAC 2 cut(s) 1067, 1099
PstNI CAGNNNCTG 3 cut(s) 353, 413, 1031
PsuI RGATCY 2 cut(s) 274, 1002
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 6 cut(s) 326, 366, 478, 519, 1268, 1275
RsaNI GTAC 6 cut(s) 325, 365, 477, 518, 1267, 1274
SaqAI TTAA 3 cut(s) 654, 707, 782
SatI GCNGC 6 cut(s) 341, 411, 579, 678, 865, 885
Sau3AI GATC 3 cut(s) 274, 1002, 1367
Sau96I GGNCC 5 cut(s) 99, 197, 300, 819, 1296
ScrFI CCNGG 3 cut(s) 161, 166, 906
SfaNI GCATC 1 cut(s) 472
SfcI CTRYAG 2 cut(s) 262, 1257
SfoI GGCGCC 1 cut(s) 1222
SinI GGWCC 4 cut(s) 99, 197, 300, 1296
Sse9I AATT 5 cut(s) 280, 390, 672, 698, 1284
SsiI CCGC 3 cut(s) 341, 797, 867
SspDI GGCGCC 1 cut(s) 1220
SspMI CTAG 4 cut(s) 182, 684, 1217, 1402
StyD4I CCNGG 3 cut(s) 159, 164, 904
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 5 cut(s) 349, 446, 1064, 1150, 1351
TaiI ACGT 1 cut(s) 782
TasI AATT 5 cut(s) 280, 390, 672, 698, 1284
TatI WGTACW 5 cut(s) 324, 364, 476, 1266, 1273
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 5 cut(s) 80, 430, 769, 910, 1123
Tru1I TTAA 3 cut(s) 654, 707, 782
Tru9I TTAA 3 cut(s) 654, 707, 782
TscAI CASTG 5 cut(s) 82, 354, 391, 424, 1069
TseFI GTSAC 5 cut(s) 36, 226, 531, 841, 1345
TseI GCWGC 5 cut(s) 410, 578, 677, 864, 884
Tsp45I GTSAC 5 cut(s) 36, 226, 531, 841, 1345
TspDTI ATGAA 5 cut(s) 42, 462, 572, 827, 971
TspRI CASTG 5 cut(s) 82, 354, 391, 424, 1069
Van91I CCANNNNNTGG 2 cut(s) 1207, 1305
VpaK11BI GGWCC 4 cut(s) 99, 197, 300, 1296
XapI RAATTY 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 1127
XspI CTAG 4 cut(s) 182, 684, 1217, 1402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.