pycom11g03580

Amino acid permease

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
2772675 .. 2775191
2517 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g03580.7

Sequence Viewer

Length: 1383 bp
ATGGCAATTCAACACCCACTTGAGTCAGCTAGTAATGGTTCCTGTGACGATGATGGCCATCCACTAAGAACTGGAACGCTGTGGAGTTGTGTGGCTCATATCATCACTGCTGTGATTGGATCTGGAGTTTTGTCTTTGGCATGGAGTACTGCTCACCTAGGGTGGATTGGAGGCCCCGTTTCGTTGCTTTGTTTTGCAATTGTCACCTACATTTCTTCCTTCCTCGTTTCGGATTGTTACCGGTCTCCTGATCCTATCACCGGAACTCGAAACAAATCTTACATGGATGCTGTGAAAGTGAATCTCAATAGTAGAAAAAAGACCTGGTTTTGTGGTTTACTTCTGTATTTCAGCATGTTTGGAACTGGTATTGCTTATGTGATTACCACTGCGACCAGTATGAGAGCCATTCAGAGATCAAACTGCTACCACAAAGAAGGGCATGAGGCTTCATGTGAATATGGAACTAGTCTGTATATGCTGCTATTTGGACTTGTCCAGATTGTTGCGTCACAAATACCAGATTTCCACAACATGGAATGGCTTTCAGTTATCGCAGCAATCATGTCCTTTGCCTACTCTTTCATTGGACTTGGCCTCGGCTTTGCAAAAGTAATAGAAAATGGGAAGATTCAAGGAAGCCTAACAGGAGTTAGAACATCAAATGTTGCTGATAAATTATGGTTATCCTTCCAAGCACTTGGAGACATTGCTTTTGCCTATCCATACTCTATTATTGTTCTTGAAGTTCAGGATACTTTGAAGTCCCCTCCACCAGAAAATCAGACAATGAAGAAGGCCTCAATGATTGCCATATTTGTCACAACCTTCTTCTACCTCTGCTGCGGATGCTTTGGATACGCCGCCTTTGGCGATGACACCCCAGGGAATCTCTTGACAGGATTCGGATTCTACGAACCCTTCTGGCTCATTGATTTTGCCAATGCTTGCATTGCTCTTCATTTGGTGGGAGGATATCAGGTCTACAGTCAACCAGTATTTGCAGTTGCTGAAAGATGGTCCACGAAGAAATACCCGAGCAGTGGATTTGTGAACAACTTTTACACTATCAAGGTCCCATTGTTACCGAGATTTCAAGTGAATCCCTTCAGGCTGTGTTTCCGAACTGTTTACGTTGTGTCAACTACCGCAATTGCGATGATATTTCCTTACTTCAACCAGGTTTTGGGAGTTTTAGGGGCCTTGAACTTTTGGCCTTTGACCATATATTTTCCTGTAGAAATGTACTTTGTACAGAAGAAAATTGGGGCTTGGACAAAAACATGGGTTGTTCTGAGGACATTTAGTTTAGCTTGCTTTCTTGTAACAGTTGTGGGTGTGATTGGATCAGTTGAAGGACTTATAAGTGCCAAACTGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

461

Amino Acids

50.78

Weight (kDa)

8.46

Isoelectric Point (pI)

29.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1364
AccB7I CCANNNNNTGG 2 cut(s) 535, 1186
AccI GTMKAC 1 cut(s) 984
AciI CCGC 3 cut(s) 846, 864, 1149
AclWI GGATC 3 cut(s) 127, 245, 1354
AcoI YGGCCR 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 1093
AfaI GTAC 3 cut(s) 148, 1247, 1254
AfiI CCNNNNNNNGG 5 cut(s) 229, 260, 535, 1043, 1186
AgeI ACCGGT 1 cut(s) 240
AgsI TTSAA 8 cut(s) 11, 635, 746, 763, 1097, 1177, 1207, 1355
AhlI ACTAGT 1 cut(s) 467
AjnI CCWGG 3 cut(s) 323, 883, 1179
AleI CACNNNNGTG 1 cut(s) 110
AluBI AGCT 3 cut(s) 29, 1313, 1380
AluI AGCT 3 cut(s) 29, 1313, 1380
Alw26I GTCTC 2 cut(s) 249, 699
AlwI GGATC 3 cut(s) 127, 245, 1354
AlwNI CAGNNNCTG 1 cut(s) 1010
Ama87I CYCGRG 1 cut(s) 1036
AoxI GGCC 6 cut(s) 55, 172, 595, 798, 1200, 1214
ApeKI GCWGC 3 cut(s) 481, 557, 843
ArsI GACNNNNNNTTYG 2 cut(s) 698, 730
AsiGI ACCGGT 1 cut(s) 240
Asp700I GAANNNNTTC 1 cut(s) 1106
AspA2I CCTAGG 1 cut(s) 157
AspS9I GGNCC 4 cut(s) 173, 1020, 1075, 1200
AsuHPI GGTGA 3 cut(s) 146, 196, 250
AvaI CYCGRG 1 cut(s) 1036
AvaII GGWCC 2 cut(s) 1020, 1075
AvrII CCTAGG 1 cut(s) 157
BalI TGGCCA 1 cut(s) 57
BbvI GCAGC 3 cut(s) 468, 569, 830
BccI CCATC 3 cut(s) 47, 66, 1011
BciT130I CCWGG 3 cut(s) 325, 885, 1181
BciVI GTATCC 2 cut(s) 748, 851
BcoDI GTCTC 2 cut(s) 249, 699
BcuI ACTAGT 1 cut(s) 467
BfaI CTAG 4 cut(s) 30, 158, 468, 1381
BfmI CTRYAG 2 cut(s) 985, 1236
BfuI GTATCC 2 cut(s) 748, 851
BisI GCNGC 4 cut(s) 482, 558, 844, 864
BlnI CCTAGG 1 cut(s) 157
BlsI GCNGC 4 cut(s) 483, 559, 845, 865
BmcAI AGTACT 1 cut(s) 148
Bme1390I CCNGG 3 cut(s) 325, 885, 1181
Bme18I GGWCC 2 cut(s) 1020, 1075
BmeT110I CYCGRG 1 cut(s) 1036
BmgT120I GGNCC 4 cut(s) 173, 1020, 1075, 1200
BmiI GGNNCC 4 cut(s) 40, 175, 1077, 1201
BmrFI CCNGG 3 cut(s) 325, 885, 1181
BmsI GCATC 2 cut(s) 277, 839
BplI GAGNNNNNCTC 2 cut(s) 136, 168
BpmI CTGGAG 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 41
BsaBI GATNNNNATC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 249
BsaJI CCNNGG 4 cut(s) 157, 598, 883, 884
BsaWI WCCGGW 2 cut(s) 240, 260
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 5 cut(s) 229, 260, 535, 1043, 1186
Bse118I RCCGGY 1 cut(s) 240
Bse1I ACTGG 4 cut(s) 76, 370, 396, 995
Bse3DI GCAATG 2 cut(s) 708, 951
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 3 cut(s) 325, 885, 1181
BseDI CCNNGG 4 cut(s) 157, 598, 883, 884
BseGI GGATG 3 cut(s) 58, 292, 854
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 5 cut(s) 229, 260, 535, 1043, 1186
BseMI GCAATG 2 cut(s) 708, 951
BseMII CTCAG 2 cut(s) 1286, 1367
BseNI ACTGG 4 cut(s) 76, 370, 396, 995
BseXI GCAGC 3 cut(s) 468, 569, 830
BshFI GGCC 6 cut(s) 57, 174, 597, 800, 1202, 1216
BshTI ACCGGT 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 1036
BsiSI CCGG 2 cut(s) 241, 261
BslFI GGGAC 2 cut(s) 751, 1061
BslI CCNNNNNNNGG 5 cut(s) 229, 260, 535, 1043, 1186
BsmAI GTCTC 2 cut(s) 249, 699
BsmFI GGGAC 2 cut(s) 751, 1061
BsnI GGCC 6 cut(s) 57, 174, 597, 800, 1202, 1216
Bso31I GGTCTC 1 cut(s) 249
BsoBI CYCGRG 1 cut(s) 1036
Bsp1407I TGTACA 1 cut(s) 1252
Bsp143I GATC 4 cut(s) 119, 250, 416, 1346
BspACI CCGC 3 cut(s) 846, 864, 1149
BspANI GGCC 6 cut(s) 57, 174, 597, 800, 1202, 1216
BspCNI CTCAG 2 cut(s) 1287, 1368
BspLI GGNNCC 4 cut(s) 40, 175, 1077, 1201
BspPI GGATC 3 cut(s) 127, 245, 1354
BspQI GCTCTTC 1 cut(s) 963
BspTNI GGTCTC 1 cut(s) 249
BsrDI GCAATG 2 cut(s) 708, 951
BsrFI RCCGGY 1 cut(s) 240
BsrGI TGTACA 1 cut(s) 1252
BsrI ACTGG 4 cut(s) 76, 370, 396, 995
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 4 cut(s) 157, 598, 883, 884
BssMI GATC 4 cut(s) 119, 250, 416, 1346
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 3 cut(s) 325, 885, 1181
Bst4CI ACNGT 3 cut(s) 989, 1129, 1330
Bst6I CTCTTC 1 cut(s) 963
BstAUI TGTACA 1 cut(s) 1252
BstC8I GCNNGC 2 cut(s) 949, 1315
BstDEI CTNAG 3 cut(s) 65, 1295, 1376
BstF5I GGATG 3 cut(s) 58, 292, 854
BstKTI GATC 4 cut(s) 122, 253, 419, 1349
BstMAI GTCTC 2 cut(s) 249, 699
BstMBI GATC 4 cut(s) 119, 250, 416, 1346
BstMWI GCNNNNNNNGC 2 cut(s) 849, 953
BstNI CCWGG 3 cut(s) 325, 885, 1181
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 3 cut(s) 323, 883, 1179
BstSFI CTRYAG 2 cut(s) 985, 1236
BstV1I GCAGC 3 cut(s) 468, 569, 830
BstX2I RGATCY 1 cut(s) 119
BstXI CCANNNNNNTGG 1 cut(s) 701
BstYI RGATCY 1 cut(s) 119
BsuI GTATCC 2 cut(s) 748, 851
BsuRI GGCC 6 cut(s) 57, 174, 597, 800, 1202, 1216
BtgZI GCGATG 2 cut(s) 888, 1172
BtsCI GGATG 3 cut(s) 58, 292, 854
BtsI GCAGTG 3 cut(s) 105, 387, 1048
BtsIMutI CAGTG 3 cut(s) 105, 387, 1048
Cac8I GCNNGC 2 cut(s) 949, 1315
CaiI CAGNNNCTG 1 cut(s) 1010
Cfr10I RCCGGY 1 cut(s) 240
Cfr13I GGNCC 4 cut(s) 173, 1020, 1075, 1200
CseI GACGC 1 cut(s) 498
CsiI ACCWGGT 2 cut(s) 323, 1179
Csp6I GTAC 3 cut(s) 147, 1246, 1253
CspAI ACCGGT 1 cut(s) 240
CviAII CATG 8 cut(s) 141, 283, 355, 443, 453, 535, 565, 1284
CviQI GTAC 3 cut(s) 147, 1246, 1253
DdeI CTNAG 3 cut(s) 65, 1295, 1376
DpnI GATC 4 cut(s) 121, 252, 418, 1348
DpnII GATC 4 cut(s) 119, 250, 416, 1346
EaeI YGGCCR 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 963
EarI CTCTTC 1 cut(s) 963
Eco130I CCWWGG 1 cut(s) 157
Eco147I AGGCCT 1 cut(s) 800
Eco31I GGTCTC 1 cut(s) 249
Eco32I GATATC 1 cut(s) 977
Eco47I GGWCC 2 cut(s) 1020, 1075
Eco57I CTGAAG 1 cut(s) 1093
Eco88I CYCGRG 1 cut(s) 1036
EcoO109I RGGNCCY 3 cut(s) 173, 1075, 1200
EcoRII CCWGG 3 cut(s) 323, 883, 1179
EcoRV GATATC 1 cut(s) 977
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 8 cut(s) 144, 286, 358, 446, 456, 538, 568, 1287
FaqI GGGAC 2 cut(s) 751, 1061
FatI CATG 8 cut(s) 140, 282, 354, 442, 452, 534, 564, 1283
FblI GTMKAC 1 cut(s) 984
Fnu4HI GCNGC 4 cut(s) 482, 558, 844, 864
FokI GGATG 3 cut(s) 45, 299, 861
Fsp4HI GCNGC 4 cut(s) 482, 558, 844, 864
FspBI CTAG 4 cut(s) 30, 158, 468, 1381
GluI GCNGC 4 cut(s) 482, 558, 844, 864
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 6 cut(s) 57, 174, 597, 800, 1202, 1216
HapII CCGG 2 cut(s) 241, 261
HgaI GACGC 1 cut(s) 498
Hin1II CATG 8 cut(s) 144, 286, 358, 446, 456, 538, 568, 1287
HincII GTYRAC 2 cut(s) 992, 1143
HindII GTYRAC 2 cut(s) 992, 1143
HinfI GANTC 7 cut(s) 23, 301, 631, 889, 903, 909, 1102
HpaII CCGG 2 cut(s) 241, 261
HphI GGTGA 3 cut(s) 146, 196, 250
Hpy166II GTNNAC 7 cut(s) 338, 985, 992, 1023, 1054, 1132, 1143
Hpy188I TCNGA 6 cut(s) 232, 414, 786, 908, 1124, 1296
Hpy188III TCNNGA 6 cut(s) 123, 248, 499, 743, 752, 895
Hpy8I GTNNAC 7 cut(s) 338, 985, 992, 1023, 1054, 1132, 1143
HpyAV CCTTC 8 cut(s) 229, 431, 700, 790, 838, 931, 1117, 1349
HpyCH4III ACNGT 3 cut(s) 989, 1129, 1330
HpyCH4IV ACGT 1 cut(s) 1134
HpyCH4V TGCA 4 cut(s) 197, 608, 951, 1004
HpyF10VI GCNNNNNNNGC 2 cut(s) 849, 953
HpyF3I CTNAG 3 cut(s) 65, 1295, 1376
HpySE526I ACGT 1 cut(s) 1134
Hsp92II CATG 8 cut(s) 144, 286, 358, 446, 456, 538, 568, 1287
Kzo9I GATC 4 cut(s) 119, 250, 416, 1346
LguI GCTCTTC 1 cut(s) 963
Lsp1109I GCAGC 3 cut(s) 468, 569, 830
LweI GCATC 2 cut(s) 277, 839
MabI ACCWGGT 2 cut(s) 323, 1179
MaeI CTAG 4 cut(s) 30, 158, 468, 1381
MaeII ACGT 1 cut(s) 1134
MaeIII GTNAC 7 cut(s) 44, 202, 236, 510, 820, 1083, 1324
MalI GATC 4 cut(s) 121, 252, 418, 1348
MboI GATC 4 cut(s) 119, 250, 416, 1346
MboII GAAGA 7 cut(s) 207, 640, 805, 823, 950, 1039, 1270
MfeI CAATTG 2 cut(s) 198, 1152
MflI RGATCY 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 57
MluCI AATT 5 cut(s) 6, 198, 677, 1152, 1263
MluNI TGGCCA 1 cut(s) 57
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 9 cut(s) 164, 233, 439, 608, 780, 811, 848, 965, 1290
Mox20I TGGCCA 1 cut(s) 57
MroXI GAANNNNTTC 1 cut(s) 1106
MscI TGGCCA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 57
MspI CCGG 2 cut(s) 241, 261
MspR9I CCNGG 3 cut(s) 325, 885, 1181
MunI CAATTG 2 cut(s) 198, 1152
MvaI CCWGG 3 cut(s) 325, 885, 1181
MwoI GCNNNNNNNGC 2 cut(s) 849, 953
NdeII GATC 4 cut(s) 119, 250, 416, 1346
NlaIII CATG 8 cut(s) 144, 286, 358, 446, 456, 538, 568, 1287
NlaIV GGNNCC 4 cut(s) 40, 175, 1077, 1201
NmeAIII GCCGAG 1 cut(s) 579
NmuCI GTSAC 4 cut(s) 44, 202, 510, 820
NspI RCATGY 1 cut(s) 358
OliI CACNNNNGTG 1 cut(s) 110
PasI CCCWGGG 1 cut(s) 884
PceI AGGCCT 1 cut(s) 800
PciSI GCTCTTC 1 cut(s) 963
PcsI WCGNNNNNNNCGW 1 cut(s) 912
PdmI GAANNNNTTC 1 cut(s) 1106
PfeI GAWTC 6 cut(s) 301, 631, 889, 903, 909, 1102
PflMI CCANNNNNTGG 2 cut(s) 535, 1186
PinAI ACCGGT 1 cut(s) 240
PkrI GCNGC 4 cut(s) 483, 559, 845, 865
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PpuMI RGGWCCY 1 cut(s) 1075
PsiI TTATAA 1 cut(s) 1364
Psp5II RGGWCCY 1 cut(s) 1075
Psp6I CCWGG 3 cut(s) 323, 883, 1179
PspGI CCWGG 3 cut(s) 323, 883, 1179
PspN4I GGNNCC 4 cut(s) 40, 175, 1077, 1201
PspPI GGNCC 4 cut(s) 173, 1020, 1075, 1200
PspPPI RGGWCCY 1 cut(s) 1075
PsrI GAACNNNNNNTAC 2 cut(s) 1046, 1078
PstNI CAGNNNCTG 1 cut(s) 1010
PsuI RGATCY 1 cut(s) 119
RsaI GTAC 3 cut(s) 148, 1247, 1254
RsaNI GTAC 3 cut(s) 147, 1246, 1253
RseI CAYNNNNRTG 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 963
SatI GCNGC 4 cut(s) 482, 558, 844, 864
Sau3AI GATC 4 cut(s) 119, 250, 416, 1346
Sau96I GGNCC 4 cut(s) 173, 1020, 1075, 1200
ScaI AGTACT 1 cut(s) 148
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 3 cut(s) 325, 885, 1181
SexAI ACCWGGT 2 cut(s) 323, 1179
SfaNI GCATC 2 cut(s) 277, 839
SfcI CTRYAG 2 cut(s) 985, 1236
SinI GGWCC 2 cut(s) 1020, 1075
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SpeI ACTAGT 1 cut(s) 467
Sse9I AATT 5 cut(s) 6, 198, 677, 1152, 1263
SseBI AGGCCT 1 cut(s) 800
SsiI CCGC 3 cut(s) 846, 864, 1149
SspMI CTAG 4 cut(s) 30, 158, 468, 1381
StuI AGGCCT 1 cut(s) 800
StyD4I CCNGG 3 cut(s) 323, 883, 1179
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 3 cut(s) 989, 1129, 1330
TaiI ACGT 1 cut(s) 1137
TaqI TCGA 1 cut(s) 268
TasI AATT 5 cut(s) 6, 198, 677, 1152, 1263
TatI WGTACW 3 cut(s) 146, 1245, 1252
TauI GCSGC 1 cut(s) 866
TfiI GAWTC 6 cut(s) 301, 631, 889, 903, 909, 1102
TscAI CASTG 3 cut(s) 112, 394, 1048
TseFI GTSAC 4 cut(s) 44, 202, 510, 820
TseI GCWGC 3 cut(s) 481, 557, 843
Tsp45I GTSAC 4 cut(s) 44, 202, 510, 820
TspDTI ATGAA 4 cut(s) 441, 574, 806, 950
TspRI CASTG 3 cut(s) 112, 394, 1048
Van91I CCANNNNNTGG 2 cut(s) 535, 1186
VpaK11BI GGWCC 2 cut(s) 1020, 1075
XceI RCATGY 1 cut(s) 358
XmaJI CCTAGG 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 984
XmnI GAANNNNTTC 1 cut(s) 1106
XspI CTAG 4 cut(s) 30, 158, 468, 1381
ZrmI AGTACT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.