Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001402

Physical Location & Seq

Genomic Coordinates Forward (+)

37663667 .. 37667913

Gene Structure 4247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCAAACTCCACAACCCAAAGAGAAGGCTGATAGAGAAGGGGGCAGACCATTGGACTTCTATATTCCAAAGTTAGACATGTATGGTTTCATCGCAGAGCAGAATCCGGGTCAGAGTAAATTTGTGCCACCATGTGTGTTTTATGTCTCTCTTTTTGATCCAATTGACAATAGTAATGGGGCTCCATCCTCACCTGGAAGTGAAAAGGCCTCATCAGCCCAGAAGGGCCAAAAGAGAGCTCTTTTAGTTTTCATATGCGTTCCGGTCAGTCCAGGTAATAGCAGATTGATATCGACCTTCCCAGTAAACTTTGGTGTTTTGATTAAGATTGTTCCCCGATGGATATATCACATTGGACAAAACCTGGTTGTGGACTCGGATTTATTTTTGCTTCATCTTGAGGAATGTAGGATAATGGATGCTGGTCTGAACCGGTGGCAGAAAGCCTGTTTTGTGCCAACAAAGTCAGATGCCGTTGTCGTTGGTTTCAGGAAGTGGCTAAACAAGTATGCTGGTGGTCAGGTAGACTGGAGAGGCAAGTACACGGGGGCTCTTCCCCCAACTCCTCCTAGAGAACAATTGTTAGACAGGTACTGGTCTCATGTTGTAAACTGCAGCAGTTGCAGTGCTGCCCACAAAGCTCTTGGCGTGCTTGAAGTTGTGTTGCAGGCCGTTTCATTATCTTTACTCGGGATTGTCACTGCAATCAAGCAAGGAGTGCTAGCATCAGCTGTGGCGAGAACTGCGCTGGTTGCAGCAGCTCTACTCTGGTTCGCAGCTTCAAAATGGTTGGCTCATTTTATATACAAAACTTTTCACTTTCACGACTACAACCATGCATTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

283

Amino Acids

31.2

Weight (kDa)

9.27

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PaO	PF08417	41 - 142	1.8e-22	Pheophorbide a oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25650 AT4G25650
fragaria_vesca	FvH4_3g45360 FvH4_3g45360 FvH4_3g45360 FvH4_3g45400 FvH4_3g45401 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02730 FvH4_7g02730 FvH4_7g02731
malus_domestica	MD03G1005500.v1.1 MD11G1008100.v1.1 MD11G1008200.v1.1
prunus_persica	Prupe.6G005300_v2.0.a1 Prupe.6G005300_v2.0.a1
pyrus_communis	pycom03g00570 pycom11g00550
rosa_chinensis	RchiOBHm_Chr1g0321981 RchiOBHm_Chr5g0083181 RchiOBHm_Chr5g0083211
rosa_laevigata	RLG00000030397 RLG00000030398 RLG00000037017
rosa_multiflora	Rmu_sc0007027.1_g000001 Rmu_sc0028710.1_g000001 Rmu_sc0041156.1_g000001 Rmu_sc0042838.1_g000001 Rmu_ssc0000026.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001290 Rroxscaffold_4G00327380
rosa_rugosa	Rorug01G0034800 Rorug05G0482900 Rorug05G0483300
rosa_samantha	Rh1AG047700 Rh1CG051800 Rh1CG052000 Rh1CG052100 Rh1DG056000 Rh1DG056200 Rh1DG056300 Rh5AG532500 Rh5AG532700 Rh5BG559700 Rh5DG568400
rosa_wichuraiana	Rw1G004350 Rw5G050050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	525
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	119
AdeI	CACNNNGTG	1 cut(s)	134
AfaI	GTAC	2 cut(s)	542, 593
AfiI	CCNNNNNNNGG	1 cut(s)	370
AflIII	ACRYGT	1 cut(s)	78
AgeI	ACCGGT	1 cut(s)	432
AgsI	TTSAA	2 cut(s)	656, 783
AjnI	CCWGG	3 cut(s)	193, 271, 363
AluBI	AGCT	5 cut(s)	239, 641, 731, 761, 779
AluI	AGCT	5 cut(s)	239, 641, 731, 761, 779
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	2 cut(s)	151, 603
AlwI	GGATC	1 cut(s)	152
AlwNI	CAGNNNCTG	1 cut(s)	594
Ama87I	CYCGRG	1 cut(s)	689
AoxI	GGCC	3 cut(s)	207, 226, 669
ApeKI	GCWGC	5 cut(s)	615, 629, 755, 758, 776
ApoI	RAATTY	1 cut(s)	119
AsiGI	ACCGGT	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	748
AspS9I	GGNCC	1 cut(s)	226
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	183
AsuNHI	GCTAGC	1 cut(s)	721
AvaI	CYCGRG	1 cut(s)	689
BanII	GRGCYC	3 cut(s)	184, 241, 553
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	5 cut(s)	616, 627, 767, 770, 788
BccI	CCATC	2 cut(s)	193, 333
BceAI	ACGGC	2 cut(s)	458, 656
BciT130I	CCWGG	3 cut(s)	195, 273, 365
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	151, 603
BfaI	CTAG	2 cut(s)	570, 722
BfmI	CTRYAG	1 cut(s)	613
BisI	GCNGC	5 cut(s)	616, 630, 756, 759, 777
BlsI	GCNGC	5 cut(s)	617, 631, 757, 760, 778
Bme1390I	CCNGG	4 cut(s)	108, 195, 273, 365
BmeT110I	CYCGRG	1 cut(s)	689
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	4 cut(s)	108, 195, 273, 365
BmrI	ACTGGG	1 cut(s)	296
BmsI	GCATC	3 cut(s)	409, 460, 734
BmtI	GCTAGC	1 cut(s)	725
BmuI	ACTGGG	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	550
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	289
BsaI	GGTCTC	1 cut(s)	603
BsaWI	WCCGGW	2 cut(s)	262, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse118I	RCCGGY	1 cut(s)	432
Bse1I	ACTGG	3 cut(s)	302, 533, 599
Bse8I	GATNNNNATC	1 cut(s)	289
BseBI	CCWGG	3 cut(s)	195, 273, 365
BseGI	GGATG	2 cut(s)	185, 424
BseJI	GATNNNNATC	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseNI	ACTGG	3 cut(s)	302, 533, 599
BseRI	GAGGAG	1 cut(s)	555
BseXI	GCAGC	5 cut(s)	616, 627, 767, 770, 788
BshFI	GGCC	3 cut(s)	209, 228, 671
BshTI	ACCGGT	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	689
BsiSI	CCGG	3 cut(s)	107, 263, 433
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	2 cut(s)	151, 603
BsnI	GGCC	3 cut(s)	209, 228, 671
Bso31I	GGTCTC	1 cut(s)	603
BsoBI	CYCGRG	1 cut(s)	689
Bsp1286I	GDGCHC	3 cut(s)	184, 241, 553
Bsp143I	GATC	1 cut(s)	157
BspANI	GGCC	3 cut(s)	209, 228, 671
BspLI	GGNNCC	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	617
BspOI	GCTAGC	1 cut(s)	725
BspPI	GGATC	1 cut(s)	152
BspQI	GCTCTTC	1 cut(s)	558
BspTNI	GGTCTC	1 cut(s)	603
BsrFI	RCCGGY	1 cut(s)	432
BsrI	ACTGG	3 cut(s)	302, 533, 599
BssAI	RCCGGY	1 cut(s)	432
BssMI	GATC	1 cut(s)	157
Bst2UI	CCWGG	3 cut(s)	195, 273, 365
Bst6I	CTCTTC	1 cut(s)	558
BstAPI	GCANNNNNTGC	2 cut(s)	621, 718
BstC8I	GCNNGC	3 cut(s)	650, 669, 723
BstF5I	GGATG	2 cut(s)	185, 424
BstHHI	GCGC	1 cut(s)	748
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	2 cut(s)	151, 603
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 621, 638, 718, 743, 752
BstNI	CCWGG	3 cut(s)	195, 273, 365
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	4 cut(s)	106, 193, 271, 363
BstSFI	CTRYAG	1 cut(s)	613
BstV1I	GCAGC	5 cut(s)	616, 627, 767, 770, 788
BsuRI	GGCC	3 cut(s)	209, 228, 671
BtgZI	GCGATG	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	185, 424
BtsI	GCAGTG	2 cut(s)	631, 699
BtsIMutI	CAGTG	2 cut(s)	631, 699
Cac8I	GCNNGC	3 cut(s)	650, 669, 723
CaiI	CAGNNNCTG	1 cut(s)	594
CfoI	GCGC	1 cut(s)	748
Cfr10I	RCCGGY	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	226
CsiI	ACCWGGT	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	541, 592
CspAI	ACCGGT	1 cut(s)	432
CviAII	CATG	4 cut(s)	79, 132, 602, 836
CviQI	GTAC	2 cut(s)	541, 592
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
DraIII	CACNNNGTG	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Ecl136II	GAGCTC	1 cut(s)	239
Eco147I	AGGCCT	1 cut(s)	209
Eco24I	GRGCYC	3 cut(s)	184, 241, 553
Eco31I	GGTCTC	1 cut(s)	603
Eco32I	GATATC	1 cut(s)	291
Eco53kI	GAGCTC	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	689
EcoICRI	GAGCTC	1 cut(s)	239
EcoRII	CCWGG	3 cut(s)	193, 271, 363
EcoRV	GATATC	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	841
EcoT38I	GRGCYC	3 cut(s)	184, 241, 553
FaeI	CATG	4 cut(s)	82, 135, 605, 839
FatI	CATG	4 cut(s)	78, 131, 601, 835
FauNDI	CATATG	1 cut(s)	254
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	5 cut(s)	616, 630, 756, 759, 777
FokI	GGATG	2 cut(s)	172, 431
FriOI	GRGCYC	3 cut(s)	184, 241, 553
Fsp4HI	GCNGC	5 cut(s)	616, 630, 756, 759, 777
FspBI	CTAG	2 cut(s)	570, 722
GlaI	GCGC	1 cut(s)	747
GluI	GCNGC	5 cut(s)	616, 630, 756, 759, 777
GsuI	CTGGAG	1 cut(s)	550
HaeIII	GGCC	3 cut(s)	209, 228, 671
HapII	CCGG	3 cut(s)	107, 263, 433
HhaI	GCGC	1 cut(s)	748
Hin1II	CATG	4 cut(s)	82, 135, 605, 839
Hin6I	GCGC	1 cut(s)	746
HinP1I	GCGC	1 cut(s)	746
HinfI	GANTC	2 cut(s)	103, 374
HpaII	CCGG	3 cut(s)	107, 263, 433
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	5 cut(s)	307, 373, 526, 543, 610
Hpy188I	TCNGA	4 cut(s)	114, 379, 429, 469
Hpy188III	TCNNGA	4 cut(s)	398, 490, 691, 824
Hpy8I	GTNNAC	5 cut(s)	307, 373, 526, 543, 610
HpyAV	CCTTC	4 cut(s)	19, 32, 217, 307
HpyCH4V	TGCA	7 cut(s)	4, 615, 624, 667, 704, 755, 839
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 621, 638, 718, 743, 752
Hsp92II	CATG	4 cut(s)	82, 135, 605, 839
HspAI	GCGC	1 cut(s)	746
Kzo9I	GATC	1 cut(s)	157
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	5 cut(s)	616, 627, 767, 770, 788
LweI	GCATC	3 cut(s)	409, 460, 734
MabI	ACCWGGT	1 cut(s)	363
MaeI	CTAG	2 cut(s)	570, 722
MaeIII	GTNAC	1 cut(s)	697
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	545
MfeI	CAATTG	2 cut(s)	162, 578
MhlI	GDGCHC	3 cut(s)	184, 241, 553
MluCI	AATT	3 cut(s)	119, 162, 578
MlyI	GAGTC	1 cut(s)	368
MnlI	CCTC	5 cut(s)	199, 220, 394, 527, 576
Mph1103I	ATGCAT	1 cut(s)	841
MseI	TTAA	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	731
MspI	CCGG	3 cut(s)	107, 263, 433
MspR9I	CCNGG	4 cut(s)	108, 195, 273, 365
MunI	CAATTG	2 cut(s)	162, 578
MvaI	CCWGG	3 cut(s)	195, 273, 365
MwoI	GCNNNNNNNGC	6 cut(s)	215, 621, 638, 718, 743, 752
NciI	CCSGG	1 cut(s)	108
NdeI	CATATG	1 cut(s)	254
NdeII	GATC	1 cut(s)	157
NheI	GCTAGC	1 cut(s)	721
NlaIII	CATG	4 cut(s)	82, 135, 605, 839
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	697
NsiI	ATGCAT	1 cut(s)	841
NspI	RCATGY	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	209
PciI	ACATGT	1 cut(s)	78
PciSI	GCTCTTC	1 cut(s)	558
PfeI	GAWTC	1 cut(s)	103
PinAI	ACCGGT	1 cut(s)	432
PkrI	GCNGC	5 cut(s)	617, 631, 757, 760, 778
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
PscI	ACATGT	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	241
Psp6I	CCWGG	3 cut(s)	193, 271, 363
PspGI	CCWGG	3 cut(s)	193, 271, 363
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	226
PstI	CTGCAG	1 cut(s)	617
PstNI	CAGNNNCTG	1 cut(s)	594
PvuII	CAGCTG	1 cut(s)	731
RsaI	GTAC	2 cut(s)	542, 593
RsaNI	GTAC	2 cut(s)	541, 592
SacI	GAGCTC	1 cut(s)	241
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	5 cut(s)	616, 630, 756, 759, 777
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	4 cut(s)	108, 195, 273, 365
SduI	GDGCHC	3 cut(s)	184, 241, 553
SexAI	ACCWGGT	1 cut(s)	363
SfaNI	GCATC	3 cut(s)	409, 460, 734
SfcI	CTRYAG	1 cut(s)	613
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	3 cut(s)	119, 162, 578
SseBI	AGGCCT	1 cut(s)	209
SspMI	CTAG	2 cut(s)	570, 722
SstI	GAGCTC	1 cut(s)	241
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	4 cut(s)	106, 193, 271, 363
TaqI	TCGA	1 cut(s)	293
TasI	AATT	3 cut(s)	119, 162, 578
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	631, 706
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	5 cut(s)	615, 629, 755, 758, 776
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	4 cut(s)	79, 241, 383, 666
TspRI	CASTG	2 cut(s)	631, 706
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	1 cut(s)	82
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	525
XspI	CTAG	2 cut(s)	570, 722
Zsp2I	ATGCAT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.