Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041156.1

Orthogroup ID

OG0001402

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2548

Gene Structure 2548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041156.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 830 bp

tacagtttgacaatatcatcaagggattgttgataaaatttgagattagaagttccaagttgggagaaaaaaaaaaaagaagcgcaaacccaagttctgttgttctaaagtggcaagccatggaaacactgagaatttcctgtattccaacattacaaattccagctgacttgggtaaaacccaatccaaaaaattcactttgttggggtataagcaaacactcacttcatcattctcgttagttgaaagacacaaaccctcatttaagacattcaccactaaatcatcttctattacaactgagactgaaaacccatctgcaccacaagttgaaactcagacccaagatgaaaaatttgactggtatgcccattggtacccgttgatgccagtttgtgaccttgacagaagggtaccacatgcaaagaaagttctgggtattgatgtggtggtgtggtgggacagaaatgagagtacatggaaggtgtttgacgatgcatgtcctcacagactggctccattatctgaaggaaggattgatcagtggggaaggttgcagtgtgtttatcatggctggtgctttaatggctccggtgactgcaagttcatccctcaggcacctacggatggtcctccgattcacacatccaaaaaagcatgtgtaagtgcttatccaagtactgtgcagaatggaatggtgtggttctggccaagttccgatccccaatacaaagatattcttacagagaaaaaacctccctacataccagaaatggatgatccatcatatacttgcttgatggcaaatagagagatcccttacgggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

275

Amino Acids

31.44

Weight (kDa)

8.68

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25650 AT4G25650
fragaria_vesca	FvH4_3g45360 FvH4_3g45360 FvH4_3g45360 FvH4_3g45400 FvH4_3g45401 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02730 FvH4_7g02730 FvH4_7g02731
malus_domestica	MD03G1005500.v1.1 MD11G1008100.v1.1 MD11G1008200.v1.1
prunus_persica	Prupe.6G005300_v2.0.a1 Prupe.6G005300_v2.0.a1
pyrus_communis	pycom03g00570 pycom11g00550
rosa_chinensis	RchiOBHm_Chr1g0321981 RchiOBHm_Chr5g0083181 RchiOBHm_Chr5g0083211
rosa_laevigata	RLG00000030397 RLG00000030398 RLG00000037017
rosa_multiflora	Rmu_sc0007027.1_g000001 Rmu_sc0028710.1_g000001 Rmu_sc0041156.1_g000001 Rmu_sc0042838.1_g000001 Rmu_ssc0000026.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001290 Rroxscaffold_4G00327380
rosa_rugosa	Rorug01G0034800 Rorug05G0482900 Rorug05G0483300
rosa_samantha	Rh1AG047700 Rh1CG051800 Rh1CG052000 Rh1CG052100 Rh1DG056000 Rh1DG056200 Rh1DG056300 Rh5AG532500 Rh5AG532700 Rh5BG559700 Rh5DG568400
rosa_wichuraiana	Rw1G004350 Rw5G050050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	377, 414
AccB1I	GGYRCC	3 cut(s)	377, 414, 618
AclWI	GGATC	3 cut(s)	715, 775, 810
AcoI	YGGCCR	1 cut(s)	709
AcsI	RAATTY	5 cut(s)	37, 134, 158, 193, 355
AcuI	CTGAAG	1 cut(s)	548
AfaI	GTAC	4 cut(s)	379, 416, 477, 681
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	2 cut(s)	247, 334
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	3 cut(s)	715, 775, 810
AoxI	GGCC	1 cut(s)	709
ApoI	RAATTY	5 cut(s)	37, 134, 158, 193, 355
Asp718I	GGTACC	2 cut(s)	377, 414
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	631
AsuHPI	GGTGA	2 cut(s)	267, 607
AvaII	GGWCC	1 cut(s)	631
AxyI	CCTNAGG	1 cut(s)	614
BalI	TGGCCA	1 cut(s)	711
BanI	GGYRCC	3 cut(s)	377, 414, 618
BccI	CCATC	4 cut(s)	324, 622, 792, 795
BclI	TGATCA	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	298
BmcAI	AGTACT	1 cut(s)	681
Bme18I	GGWCC	1 cut(s)	631
BmgT120I	GGNCC	1 cut(s)	631
BmiI	GGNNCC	5 cut(s)	379, 416, 518, 591, 620
BmsI	GCATC	2 cut(s)	377, 486
BsaJI	CCNNGG	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse1I	ACTGG	3 cut(s)	367, 391, 518
Bse21I	CCTNAGG	1 cut(s)	614
BseDI	CCNNGG	1 cut(s)	119
BseGI	GGATG	4 cut(s)	608, 633, 646, 783
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMII	CTCAG	4 cut(s)	121, 293, 352, 628
BseNI	ACTGG	3 cut(s)	367, 391, 518
BsgI	GTGCAG	2 cut(s)	305, 706
BshFI	GGCC	1 cut(s)	711
BshNI	GGYRCC	3 cut(s)	377, 414, 618
BsiSI	CCGG	1 cut(s)	593
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	711
Bsp143I	GATC	4 cut(s)	540, 720, 780, 815
Bsp19I	CCATGG	1 cut(s)	119
BspANI	GGCC	1 cut(s)	711
BspCNI	CTCAG	4 cut(s)	122, 294, 351, 627
BspLI	GGNNCC	5 cut(s)	379, 416, 518, 591, 620
BspPI	GGATC	3 cut(s)	715, 775, 810
BspT107I	GGYRCC	3 cut(s)	377, 414, 618
BsrI	ACTGG	3 cut(s)	367, 391, 518
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	4 cut(s)	540, 720, 780, 815
BssT1I	CCWWGG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	5, 684
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	4 cut(s)	130, 302, 338, 614
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	4 cut(s)	608, 633, 646, 783
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	4 cut(s)	543, 723, 783, 818
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	4 cut(s)	540, 720, 780, 815
BstMWI	GCNNNNNNNGC	1 cut(s)	587
BstNSI	RCATGY	3 cut(s)	424, 503, 662
BstX2I	RGATCY	1 cut(s)	815
BstYI	RGATCY	1 cut(s)	815
Bsu36I	CCTNAGG	1 cut(s)	614
BsuRI	GGCC	1 cut(s)	711
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	4 cut(s)	608, 633, 646, 783
BtsI	GCAGTG	1 cut(s)	565
BtsIMutI	CAGTG	3 cut(s)	127, 550, 565
Cac8I	GCNNGC	1 cut(s)	116
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	631
Csp6I	GTAC	4 cut(s)	378, 415, 476, 680
CviAII	CATG	6 cut(s)	120, 421, 479, 500, 571, 659
CviJI	RGCY	6 cut(s)	118, 166, 517, 575, 590, 711
CviKI_1	RGCY	6 cut(s)	118, 166, 517, 575, 590, 711
CviQI	GTAC	4 cut(s)	378, 415, 476, 680
DdeI	CTNAG	4 cut(s)	130, 302, 338, 614
DpnI	GATC	4 cut(s)	542, 722, 782, 817
DpnII	GATC	4 cut(s)	540, 720, 780, 815
EaeI	YGGCCR	1 cut(s)	709
Eco130I	CCWWGG	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	631
Eco57I	CTGAAG	1 cut(s)	548
Eco81I	CCTNAGG	1 cut(s)	614
EcoT14I	CCWWGG	1 cut(s)	119
EcoT22I	ATGCAT	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	6 cut(s)	123, 424, 482, 503, 574, 662
FalI	AAGNNNNNCTT	2 cut(s)	725, 757
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	6 cut(s)	119, 420, 478, 499, 570, 658
FbaI	TGATCA	1 cut(s)	540
FokI	GGATG	4 cut(s)	595, 633, 640, 790
GlaI	GCGC	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	711
HapII	CCGG	1 cut(s)	593
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	6 cut(s)	123, 424, 482, 503, 574, 662
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	1 cut(s)	639
HpaII	CCGG	1 cut(s)	593
HphI	GGTGA	2 cut(s)	267, 607
Hpy188I	TCNGA	4 cut(s)	341, 528, 638, 720
HpyAV	CCTTC	5 cut(s)	404, 477, 523, 527, 545
HpyCH4III	ACNGT	2 cut(s)	5, 684
HpyCH4V	TGCA	6 cut(s)	322, 424, 499, 558, 602, 687
HpyF10VI	GCNNNNNNNGC	1 cut(s)	587
HpyF3I	CTNAG	4 cut(s)	130, 302, 338, 614
Hsp92II	CATG	6 cut(s)	123, 424, 482, 503, 574, 662
HspAI	GCGC	1 cut(s)	83
KpnI	GGTACC	2 cut(s)	381, 418
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	4 cut(s)	540, 720, 780, 815
LmnI	GCTCC	2 cut(s)	522, 595
LweI	GCATC	2 cut(s)	377, 486
MaeIII	GTNAC	2 cut(s)	397, 595
MalI	GATC	4 cut(s)	542, 722, 782, 817
MboI	GATC	4 cut(s)	540, 720, 780, 815
MboII	GAAGA	1 cut(s)	281
MflI	RGATCY	1 cut(s)	815
MlsI	TGGCCA	1 cut(s)	711
MluCI	AATT	5 cut(s)	37, 134, 158, 193, 355
MluNI	TGGCCA	1 cut(s)	711
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	5 cut(s)	270, 515, 623, 644, 767
Mox20I	TGGCCA	1 cut(s)	711
Mph1103I	ATGCAT	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	711
MseI	TTAA	2 cut(s)	266, 584
Msp20I	TGGCCA	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	1 cut(s)	587
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	4 cut(s)	540, 720, 780, 815
NlaIII	CATG	6 cut(s)	123, 424, 482, 503, 574, 662
NlaIV	GGNNCC	5 cut(s)	379, 416, 518, 591, 620
NmuCI	GTSAC	2 cut(s)	397, 595
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	3 cut(s)	424, 503, 662
PfeI	GAWTC	1 cut(s)	639
PspN4I	GGNNCC	5 cut(s)	379, 416, 518, 591, 620
PspPI	GGNCC	1 cut(s)	631
PsuI	RGATCY	1 cut(s)	815
PvuII	CAGCTG	1 cut(s)	166
RsaI	GTAC	4 cut(s)	379, 416, 477, 681
RsaNI	GTAC	4 cut(s)	378, 415, 476, 680
SaqAI	TTAA	2 cut(s)	266, 584
Sau3AI	GATC	4 cut(s)	540, 720, 780, 815
Sau96I	GGNCC	1 cut(s)	631
ScaI	AGTACT	1 cut(s)	681
SetI	ASST	6 cut(s)	168, 404, 488, 556, 624, 759
SfaNI	GCATC	2 cut(s)	377, 486
SinI	GGWCC	1 cut(s)	631
Sse9I	AATT	5 cut(s)	37, 134, 158, 193, 355
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	5, 684
TasI	AATT	5 cut(s)	37, 134, 158, 193, 355
TatI	WGTACW	2 cut(s)	475, 679
TfiI	GAWTC	1 cut(s)	639
Tru1I	TTAA	2 cut(s)	266, 584
Tru9I	TTAA	2 cut(s)	266, 584
TscAI	CASTG	3 cut(s)	134, 550, 565
TseFI	GTSAC	2 cut(s)	397, 595
Tsp45I	GTSAC	2 cut(s)	397, 595
TspDTI	ATGAA	3 cut(s)	218, 365, 597
TspGWI	ACGGA	1 cut(s)	640
TspRI	CASTG	3 cut(s)	134, 550, 565
VpaK11BI	GGWCC	1 cut(s)	631
XapI	RAATTY	5 cut(s)	37, 134, 158, 193, 355
XceI	RCATGY	3 cut(s)	424, 503, 662
ZrmI	AGTACT	1 cut(s)	681
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.