Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042838.1

Orthogroup ID

OG0001402

Physical Location & Seq

Genomic Coordinates Forward (+)

81 .. 2659

Gene Structure 2579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042838.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atgcagattcacacttcgaagaaagcatgtgtaggtgcttatccaagtaccgtgcagaatggaatcgtgtggttctggccaagttctgatcctcaatacaaagatattcttgcagagaaaaagcctccctacataccggaaatagatgatccatcatatgctagcttgatgggaaatagggagataccttacgggtacgaggtcttgattgaaaatcttatggaccctgctcatgttccatatgcacattatggaataatgcaaactcgacaacccaaagagaaagctgatagagaagggggcagaccattggacttttatattcctaagttagacataaatggtttcatcgcagagcagaatccaggtcacagtatatttctgccgccatgtgtgttttgtgtttctatctttagtccagttgaccatattagtggggctgcatcctcacctggaactgaaaaggtattatcaccccaaacgggacaaaagcaagctcttttagtgtttatctgcgttccagttagtccaggtaatagcagattgatatggactttcccaagaaactttggcgtttggattgacaggattgttccacgatggatatttcatattgggcaaaacctgattctggactcggatttatatttgcttcatattgaggaacataggataatggatgctagccctacccagtggcagaaagcttgttttgtgccaacaaagtcagatgcccttgttgttggtttccgaaagtggttaaacaagtatgcgggtggtcaggtagattggagaggcaagttcactggggctttaccgcccactgctcctaaagaacagttgttggacaggtaccggtctcatgtggtaaactgcagcagttgcaattctgcctacaaagctctaggcgtgcttgaagtcgtattgcaggtcttctcgttttctttacttggaattgtcgctgcaattaagcaaggagtattatcatcactggctgcgagaactgcgctagttgcaacagctctactatgctttgcaggttcaaaatggttggctcattttatccacaaaaactttcactttcacgactacaaccatgccctggtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

369

Amino Acids

41.26

Weight (kDa)

8.52

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25650 AT4G25650
fragaria_vesca	FvH4_3g45360 FvH4_3g45360 FvH4_3g45360 FvH4_3g45400 FvH4_3g45401 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02730 FvH4_7g02730 FvH4_7g02731
malus_domestica	MD03G1005500.v1.1 MD11G1008100.v1.1 MD11G1008200.v1.1
prunus_persica	Prupe.6G005300_v2.0.a1 Prupe.6G005300_v2.0.a1
pyrus_communis	pycom03g00570 pycom11g00550
rosa_chinensis	RchiOBHm_Chr1g0321981 RchiOBHm_Chr5g0083181 RchiOBHm_Chr5g0083211
rosa_laevigata	RLG00000030397 RLG00000030398 RLG00000037017
rosa_multiflora	Rmu_sc0007027.1_g000001 Rmu_sc0028710.1_g000001 Rmu_sc0041156.1_g000001 Rmu_sc0042838.1_g000001 Rmu_ssc0000026.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001290 Rroxscaffold_4G00327380
rosa_rugosa	Rorug01G0034800 Rorug05G0482900 Rorug05G0483300
rosa_samantha	Rh1AG047700 Rh1CG051800 Rh1CG052000 Rh1CG052100 Rh1DG056000 Rh1DG056200 Rh1DG056300 Rh5AG532500 Rh5AG532700 Rh5BG559700 Rh5DG568400
rosa_wichuraiana	Rw1G004350 Rw5G050050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	919, 1028
Acc65I	GGTACC	1 cut(s)	852
AccB1I	GGYRCC	1 cut(s)	852
AccB7I	CCANNNNNTGG	1 cut(s)	1102
AciI	CCGC	3 cut(s)	386, 773, 818
AclWI	GGATC	2 cut(s)	83, 143
AcoI	YGGCCR	1 cut(s)	77
AfaI	GTAC	3 cut(s)	49, 197, 854
AfiI	CCNNNNNNNGG	3 cut(s)	482, 631, 1102
AgeI	ACCGGT	1 cut(s)	855
AgsI	TTSAA	3 cut(s)	212, 917, 1044
AjnI	CCWGG	4 cut(s)	364, 451, 529, 1101
AluBI	AGCT	6 cut(s)	165, 287, 497, 707, 902, 1022
AluI	AGCT	6 cut(s)	165, 287, 497, 707, 902, 1022
Alw26I	GTCTC	1 cut(s)	864
AlwI	GGATC	2 cut(s)	83, 143
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	4 cut(s)	440, 876, 962, 995
AsiGI	ACCGGT	1 cut(s)	855
Asp718I	GGTACC	1 cut(s)	852
AspLEI	GCGC	1 cut(s)	1009
AspS9I	GGNCC	1 cut(s)	223
AsuHPI	GGTGA	2 cut(s)	441, 465
AsuII	TTCGAA	1 cut(s)	17
AsuNHI	GCTAGC	2 cut(s)	161, 683
AvaII	GGWCC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	852
BbsI	GAAGAC	1 cut(s)	925
BbvI	GCAGC	4 cut(s)	427, 888, 949, 982
BccI	CCATC	3 cut(s)	160, 163, 594
BciT130I	CCWGG	4 cut(s)	366, 453, 531, 1103
BcoDI	GTCTC	1 cut(s)	864
BfaI	CTAG	4 cut(s)	162, 684, 905, 1010
BfmI	CTRYAG	1 cut(s)	874
BfuAI	ACCTGC	2 cut(s)	919, 1028
BisI	GCNGC	5 cut(s)	386, 441, 877, 963, 996
BlsI	GCNGC	5 cut(s)	387, 442, 878, 964, 997
Bme1390I	CCNGG	4 cut(s)	366, 453, 531, 1103
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	2 cut(s)	225, 854
BmrFI	CCNGG	4 cut(s)	366, 453, 531, 1103
BmrI	ACTGGG	2 cut(s)	688, 816
BmsI	GCATC	3 cut(s)	452, 670, 721
BmtI	GCTAGC	2 cut(s)	165, 687
BmuI	ACTGGG	2 cut(s)	688, 816
BpiI	GAAGAC	1 cut(s)	925
Bpu14I	TTCGAA	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	864
BsaJI	CCNNGG	1 cut(s)	1101
BsaWI	WCCGGW	2 cut(s)	136, 855
Bsc4I	CCNNNNNNNGG	3 cut(s)	482, 631, 1102
Bse118I	RCCGGY	1 cut(s)	855
Bse1I	ACTGG	5 cut(s)	419, 521, 694, 811, 996
BseBI	CCWGG	4 cut(s)	366, 453, 531, 1103
BseDI	CCNNGG	1 cut(s)	1101
BseGI	GGATG	2 cut(s)	443, 685
BseLI	CCNNNNNNNGG	3 cut(s)	482, 631, 1102
BseNI	ACTGG	5 cut(s)	419, 521, 694, 811, 996
BseXI	GCAGC	4 cut(s)	427, 888, 949, 982
BsgI	GTGCAG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	852
BshTI	ACCGGT	1 cut(s)	855
BsiSI	CCGG	2 cut(s)	137, 856
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	3 cut(s)	482, 631, 1102
BsmAI	GTCTC	1 cut(s)	864
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	1 cut(s)	79
Bso31I	GGTCTC	1 cut(s)	864
Bsp119I	TTCGAA	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	88, 148
BspACI	CCGC	3 cut(s)	386, 773, 818
BspANI	GGCC	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	225, 854
BspMAI	CTGCAG	1 cut(s)	878
BspMI	ACCTGC	2 cut(s)	919, 1028
BspOI	GCTAGC	2 cut(s)	165, 687
BspPI	GGATC	2 cut(s)	83, 143
BspT104I	TTCGAA	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	852
BspTNI	GGTCTC	1 cut(s)	864
BsrFI	RCCGGY	1 cut(s)	855
BsrI	ACTGG	5 cut(s)	419, 521, 694, 811, 996
BssAI	RCCGGY	1 cut(s)	855
BssECI	CCNNGG	1 cut(s)	1101
BssMI	GATC	2 cut(s)	88, 148
Bst2UI	CCWGG	4 cut(s)	366, 453, 531, 1103
Bst4CI	ACNGT	3 cut(s)	52, 374, 840
BstAPI	GCANNNNNTGC	1 cut(s)	882
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	4 cut(s)	163, 495, 685, 911
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	2 cut(s)	443, 685
BstHHI	GCGC	1 cut(s)	1009
BstKTI	GATC	2 cut(s)	91, 151
BstMAI	GTCTC	1 cut(s)	864
BstMBI	GATC	2 cut(s)	88, 148
BstMWI	GCNNNNNNNGC	4 cut(s)	882, 899, 1004, 1013
BstNI	CCWGG	4 cut(s)	366, 453, 531, 1103
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	4 cut(s)	364, 451, 529, 1101
BstSFI	CTRYAG	1 cut(s)	874
BstV1I	GCAGC	4 cut(s)	427, 888, 949, 982
BstV2I	GAAGAC	1 cut(s)	925
BstXI	CCANNNNNNTGG	1 cut(s)	434
BsuRI	GGCC	1 cut(s)	79
BtgZI	GCGATG	1 cut(s)	334
BtsCI	GGATG	2 cut(s)	443, 685
BtsI	GCAGTG	1 cut(s)	822
BtsIMutI	CAGTG	4 cut(s)	701, 804, 822, 989
BveI	ACCTGC	2 cut(s)	919, 1028
Cac8I	GCNNGC	4 cut(s)	163, 495, 685, 911
CfoI	GCGC	1 cut(s)	1009
Cfr10I	RCCGGY	1 cut(s)	855
Cfr13I	GGNCC	1 cut(s)	223
Csp6I	GTAC	3 cut(s)	48, 196, 853
CspAI	ACCGGT	1 cut(s)	855
CviAII	CATG	5 cut(s)	27, 233, 390, 863, 1097
CviQI	GTAC	3 cut(s)	48, 196, 853
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	2 cut(s)	90, 150
DpnII	GATC	2 cut(s)	88, 148
EaeI	YGGCCR	1 cut(s)	77
Eco31I	GGTCTC	1 cut(s)	864
Eco47I	GGWCC	1 cut(s)	223
EcoRII	CCWGG	4 cut(s)	364, 451, 529, 1101
FaeI	CATG	5 cut(s)	30, 236, 393, 866, 1100
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	5 cut(s)	26, 232, 389, 862, 1096
FauI	CCCGC	1 cut(s)	766
FauNDI	CATATG	2 cut(s)	157, 241
Fnu4HI	GCNGC	5 cut(s)	386, 441, 877, 963, 996
FokI	GGATG	2 cut(s)	430, 692
Fsp4HI	GCNGC	5 cut(s)	386, 441, 877, 963, 996
FspBI	CTAG	4 cut(s)	162, 684, 905, 1010
GlaI	GCGC	1 cut(s)	1008
GluI	GCNGC	5 cut(s)	386, 441, 877, 963, 996
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	2 cut(s)	137, 856
HhaI	GCGC	1 cut(s)	1009
Hin1II	CATG	5 cut(s)	30, 236, 393, 866, 1100
Hin6I	GCGC	1 cut(s)	1007
HinP1I	GCGC	1 cut(s)	1007
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	705
HinfI	GANTC	5 cut(s)	7, 63, 361, 628, 635
HpaII	CCGG	2 cut(s)	137, 856
HphI	GGTGA	2 cut(s)	441, 465
Hpy166II	GTNNAC	3 cut(s)	424, 804, 871
Hpy188I	TCNGA	4 cut(s)	88, 640, 730, 752
Hpy188III	TCNNGA	3 cut(s)	205, 632, 1085
Hpy8I	GTNNAC	3 cut(s)	424, 804, 871
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	3 cut(s)	52, 374, 840
HpyF10VI	GCNNNNNNNGC	4 cut(s)	882, 899, 1004, 1013
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	5 cut(s)	30, 236, 393, 866, 1100
HspAI	GCGC	1 cut(s)	1007
KpnI	GGTACC	1 cut(s)	856
Kzo9I	GATC	2 cut(s)	88, 148
LmnI	GCTCC	1 cut(s)	832
Lsp1109I	GCAGC	4 cut(s)	427, 888, 949, 982
LweI	GCATC	3 cut(s)	452, 670, 721
MaeI	CTAG	4 cut(s)	162, 684, 905, 1010
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	2 cut(s)	90, 150
MboI	GATC	2 cut(s)	88, 148
MboII	GAAGA	2 cut(s)	31, 925
MlsI	TGGCCA	1 cut(s)	79
MluCI	AATT	3 cut(s)	886, 954, 966
MluNI	TGGCCA	1 cut(s)	79
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	1 cut(s)	825
MnlI	CCTC	6 cut(s)	102, 135, 193, 457, 655, 788
Mox20I	TGGCCA	1 cut(s)	79
MscI	TGGCCA	1 cut(s)	79
MseI	TTAA	2 cut(s)	761, 969
MslI	CAYNNNNRTG	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	79
MspI	CCGG	2 cut(s)	137, 856
MspR9I	CCNGG	4 cut(s)	366, 453, 531, 1103
MvaI	CCWGG	4 cut(s)	366, 453, 531, 1103
MwoI	GCNNNNNNNGC	4 cut(s)	882, 899, 1004, 1013
NdeI	CATATG	2 cut(s)	157, 241
NdeII	GATC	2 cut(s)	88, 148
NheI	GCTAGC	2 cut(s)	161, 683
NlaIII	CATG	5 cut(s)	30, 236, 393, 866, 1100
NlaIV	GGNNCC	2 cut(s)	225, 854
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	1 cut(s)	30
NspV	TTCGAA	1 cut(s)	17
PfeI	GAWTC	4 cut(s)	7, 63, 361, 628
PflMI	CCANNNNNTGG	1 cut(s)	1102
PinAI	ACCGGT	1 cut(s)	855
PkrI	GCNGC	5 cut(s)	387, 442, 878, 964, 997
PleI	GAGTC	1 cut(s)	629
PpsI	GAGTC	1 cut(s)	629
Psp6I	CCWGG	4 cut(s)	364, 451, 529, 1101
PspGI	CCWGG	4 cut(s)	364, 451, 529, 1101
PspN4I	GGNNCC	2 cut(s)	225, 854
PspPI	GGNCC	1 cut(s)	223
PstI	CTGCAG	1 cut(s)	878
RsaI	GTAC	3 cut(s)	49, 197, 854
RsaNI	GTAC	3 cut(s)	48, 196, 853
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	761, 969
SatI	GCNGC	5 cut(s)	386, 441, 877, 963, 996
Sau3AI	GATC	2 cut(s)	88, 148
Sau96I	GGNCC	1 cut(s)	223
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	4 cut(s)	366, 453, 531, 1103
SfaNI	GCATC	3 cut(s)	452, 670, 721
SfcI	CTRYAG	1 cut(s)	874
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	432
Sse9I	AATT	3 cut(s)	886, 954, 966
SsiI	CCGC	3 cut(s)	386, 773, 818
SspMI	CTAG	4 cut(s)	162, 684, 905, 1010
StyD4I	CCNGG	4 cut(s)	364, 451, 529, 1101
TaaI	ACNGT	3 cut(s)	52, 374, 840
TaqI	TCGA	2 cut(s)	17, 268
TasI	AATT	3 cut(s)	886, 954, 966
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	4 cut(s)	7, 63, 361, 628
Tru1I	TTAA	2 cut(s)	761, 969
Tru9I	TTAA	2 cut(s)	761, 969
TscAI	CASTG	4 cut(s)	701, 811, 829, 996
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	4 cut(s)	440, 876, 962, 995
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	3 cut(s)	337, 599, 644
TspRI	CASTG	4 cut(s)	701, 811, 829, 996
Van91I	CCANNNNNTGG	1 cut(s)	1102
VpaK11BI	GGWCC	1 cut(s)	223
XceI	RCATGY	1 cut(s)	30
XspI	CTAG	4 cut(s)	162, 684, 905, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.