Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001402

Physical Location & Seq

Genomic Coordinates Forward (+)

91450803 .. 91455896

Gene Structure 5094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG532700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGAAATTCTGAGAACTTCCTCTATCCCATCACCACAATTTCCAGCTAAAATATTTGACAAAACCCAATCCAAAAAACTCACTTTCTTGGGGTTTAAGCAAGTACCCGCTCCATCGCTCTCATTAGTTCAAAGACACAGACCCACATTTAAGACATTCACCACCATATCATCTTCTAATATTACAACTGAGACTGAAAACCCATCTTCACCACAAGTTGAAAATCAGACCCCAGATGATAAATTTGACTGGTATGCCCACTGGTACCCATTGATGCCAGTTTGTGACCTTGACAAAAGGGTACCACATGCAAAGAAAGTCATGGGTATTGATGTGGTGGTGTGGTGGGATAGAAATGAGAGTGCGTGGAAGGTGTTTGATGATGCATGTCCTCACAGATTGGCTCCATTATCTGAAGGGAGGATTGATCAGTGGGGAAGGTTGCAGTGTGTTTATCATGGTTGGTGTTTTAATGGCTCCGGTGACTGCAAGTTCATCCCTCAGGCACCTACCGATGGCCCTCCGATTCACACATCCAAGAAAGCATGTGTAGCTCCTTATCCAAGTACTGTGCAGAATGGAATAGTGTGGTTCTGGCCAAGTTCCGATCCTGAATACAAAGATATTCTTACAGAGAAAAAACCTCCCTACATACCGGAACTGGATGATCCCTCGTATACTTGCTTGATGGGAAATAGAGAGATCCCTTACGGGTATGAGGTCTTGATTGAAAATCTTATGGATCCTGCTCATCTTCCATATGCACATTATGGAATAATGCAAACTCAACAACCGAAAGAGAAGGCTGATAGAGAAGGGGGCAGACCATTAGACATGTATGTTCCTAAGTTAGACATAAATGGTTTCATCGCAGAGCAGAATCCGGGTCAGAGTAAATTTGTGCCACCATGTGTGTTTTATGTTTCTCTCTTTGATCCAATTGACAATAGTAATGGGGCTGCATCCTCACCTGGAACTGAAAAGGTCTCATTAGCCCAAAACAGCCAAAAGAGAGCTCTTTTAGTTTTTATATGCGTTCCAGTAAGTCCAGGTAATAGCAGATTGATATCGACCTTCCCACAAAACTTTGGTGTTTGGATTAAGATTCTTCCCCGATGGATATATCACATTGGACAAAACCTGGTTGTGGACTCAGATTTATATTTGCTTCATCTTGAGGAACGTAGGATAATGGATGCTGGTCTTACCCAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

405

Amino Acids

46.0

Weight (kDa)

6.21

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rieske	PF00355	87 - 170	8.6e-24	Rieske [2Fe-2S] domain
PaO	PF08417	300 - 401	5.4e-25	Pheophorbide a oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25650 AT4G25650
fragaria_vesca	FvH4_3g45360 FvH4_3g45360 FvH4_3g45360 FvH4_3g45400 FvH4_3g45401 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02730 FvH4_7g02730 FvH4_7g02731
malus_domestica	MD03G1005500.v1.1 MD11G1008100.v1.1 MD11G1008200.v1.1
prunus_persica	Prupe.6G005300_v2.0.a1 Prupe.6G005300_v2.0.a1
pyrus_communis	pycom03g00570 pycom11g00550
rosa_chinensis	RchiOBHm_Chr1g0321981 RchiOBHm_Chr5g0083181 RchiOBHm_Chr5g0083211
rosa_laevigata	RLG00000030397 RLG00000030398 RLG00000037017
rosa_multiflora	Rmu_sc0007027.1_g000001 Rmu_sc0028710.1_g000001 Rmu_sc0041156.1_g000001 Rmu_sc0042838.1_g000001 Rmu_ssc0000026.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001290 Rroxscaffold_4G00327380
rosa_rugosa	Rorug01G0034800 Rorug05G0482900 Rorug05G0483300
rosa_samantha	Rh1AG047700 Rh1CG051800 Rh1CG052000 Rh1CG052100 Rh1DG056000 Rh1DG056200 Rh1DG056300 Rh5AG532500 Rh5AG532700 Rh5BG559700 Rh5DG568400
rosa_wichuraiana	Rw1G004350 Rw5G050050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	264, 301
AccB1I	GGYRCC	3 cut(s)	264, 301, 505
AccBSI	CCGCTC	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	677
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	6 cut(s)	602, 662, 697, 737, 750, 929
AcoI	YGGCCR	1 cut(s)	596
AcsI	RAATTY	3 cut(s)	6, 242, 896
AcuI	CTGAAG	1 cut(s)	435
AdeI	CACNNNGTG	1 cut(s)	911
AfaI	GTAC	4 cut(s)	105, 266, 303, 568
AfiI	CCNNNNNNNGG	2 cut(s)	515, 1147
AflIII	ACRYGT	1 cut(s)	834
AgsI	TTSAA	3 cut(s)	131, 221, 731
AjnI	CCWGG	3 cut(s)	970, 1048, 1140
AluBI	AGCT	3 cut(s)	47, 554, 1016
AluI	AGCT	3 cut(s)	47, 554, 1016
Alw21I	GWGCWC	1 cut(s)	1018
Alw26I	GTCTC	2 cut(s)	185, 991
AlwI	GGATC	6 cut(s)	602, 662, 697, 737, 750, 929
AoxI	GGCC	2 cut(s)	517, 596
ApeKI	GCWGC	1 cut(s)	959
ApoI	RAATTY	3 cut(s)	6, 242, 896
Asp718I	GGTACC	2 cut(s)	264, 301
AspS9I	GGNCC	1 cut(s)	518
AsuC2I	CCSGG	1 cut(s)	885
AsuHPI	GGTGA	5 cut(s)	24, 151, 201, 494, 960
AxyI	CCTNAGG	1 cut(s)	501
BalI	TGGCCA	1 cut(s)	598
BamHI	GGATCC	1 cut(s)	742
BanI	GGYRCC	3 cut(s)	264, 301, 505
BanII	GRGCYC	1 cut(s)	1018
Bbv12I	GWGCWC	1 cut(s)	1018
BbvI	GCAGC	1 cut(s)	946
BccI	CCATC	6 cut(s)	37, 121, 211, 509, 682, 1110
BciT130I	CCWGG	3 cut(s)	972, 1050, 1142
BclI	TGATCA	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	885
BcoDI	GTCTC	2 cut(s)	185, 991
BisI	GCNGC	1 cut(s)	960
BlsI	GCNGC	1 cut(s)	961
BmcAI	AGTACT	1 cut(s)	568
Bme1390I	CCNGG	4 cut(s)	885, 972, 1050, 1142
BmgT120I	GGNCC	1 cut(s)	518
BmiI	GGNNCC	6 cut(s)	266, 303, 405, 478, 507, 744
BmrFI	CCNGG	4 cut(s)	885, 972, 1050, 1142
BmrI	ACTGGG	1 cut(s)	1204
BmsI	GCATC	4 cut(s)	264, 373, 971, 1186
BmuI	ACTGGG	1 cut(s)	1204
BpuEI	CTTGAG	1 cut(s)	1196
BpuMI	CCSGG	1 cut(s)	885
BsaBI	GATNNNNATC	1 cut(s)	1066
BsaI	GGTCTC	1 cut(s)	991
BsaWI	WCCGGW	2 cut(s)	479, 655
Bsc4I	CCNNNNNNNGG	2 cut(s)	515, 1147
Bse1I	ACTGG	6 cut(s)	254, 266, 278, 666, 1040, 1210
Bse21I	CCTNAGG	1 cut(s)	501
Bse8I	GATNNNNATC	1 cut(s)	1066
BseBI	CCWGG	3 cut(s)	972, 1050, 1142
BseGI	GGATG	5 cut(s)	495, 533, 670, 962, 1201
BseJI	GATNNNNATC	1 cut(s)	1066
BseLI	CCNNNNNNNGG	2 cut(s)	515, 1147
BseMII	CTCAG	3 cut(s)	180, 515, 1167
BseNI	ACTGG	6 cut(s)	254, 266, 278, 666, 1040, 1210
BseXI	GCAGC	1 cut(s)	946
BsgI	GTGCAG	1 cut(s)	593
BshFI	GGCC	2 cut(s)	519, 598
BshNI	GGYRCC	3 cut(s)	264, 301, 505
BsiHKAI	GWGCWC	1 cut(s)	1018
BsiSI	CCGG	3 cut(s)	480, 656, 884
BslI	CCNNNNNNNGG	2 cut(s)	515, 1147
BsmAI	GTCTC	2 cut(s)	185, 991
BsnI	GGCC	2 cut(s)	519, 598
Bso31I	GGTCTC	1 cut(s)	991
Bsp1286I	GDGCHC	1 cut(s)	1018
Bsp143I	GATC	6 cut(s)	427, 607, 667, 702, 742, 934
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	2 cut(s)	519, 598
BspCNI	CTCAG	3 cut(s)	181, 514, 1166
BspLI	GGNNCC	6 cut(s)	266, 303, 405, 478, 507, 744
BspPI	GGATC	6 cut(s)	602, 662, 697, 737, 750, 929
BspT107I	GGYRCC	3 cut(s)	264, 301, 505
BspTNI	GGTCTC	1 cut(s)	991
BsrBI	CCGCTC	1 cut(s)	110
BsrI	ACTGG	6 cut(s)	254, 266, 278, 666, 1040, 1210
BssMI	GATC	6 cut(s)	427, 607, 667, 702, 742, 934
BssNAI	GTATAC	1 cut(s)	678
Bst1107I	GTATAC	1 cut(s)	678
Bst2UI	CCWGG	3 cut(s)	972, 1050, 1142
Bst4CI	ACNGT	1 cut(s)	571
BstDEI	CTNAG	5 cut(s)	11, 189, 501, 846, 1153
BstF5I	GGATG	5 cut(s)	495, 533, 670, 962, 1201
BstKTI	GATC	6 cut(s)	430, 610, 670, 705, 745, 937
BstMAI	GTCTC	2 cut(s)	185, 991
BstMBI	GATC	6 cut(s)	427, 607, 667, 702, 742, 934
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNI	CCWGG	3 cut(s)	972, 1050, 1142
BstNSI	RCATGY	4 cut(s)	311, 390, 549, 838
BstSCI	CCNGG	4 cut(s)	883, 970, 1048, 1140
BstV1I	GCAGC	1 cut(s)	946
BstX2I	RGATCY	2 cut(s)	702, 742
BstYI	RGATCY	2 cut(s)	702, 742
BstZ17I	GTATAC	1 cut(s)	678
Bsu36I	CCTNAGG	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	519, 598
BtgZI	GCGATG	2 cut(s)	99, 853
BtsCI	GGATG	5 cut(s)	495, 533, 670, 962, 1201
BtsI	GCAGTG	1 cut(s)	452
BtsIMutI	CAGTG	4 cut(s)	259, 437, 452, 1217
Cfr13I	GGNCC	1 cut(s)	518
CsiI	ACCWGGT	1 cut(s)	1140
Csp6I	GTAC	4 cut(s)	104, 265, 302, 567
CviAII	CATG	7 cut(s)	308, 322, 387, 458, 546, 835, 909
CviQI	GTAC	4 cut(s)	104, 265, 302, 567
DdeI	CTNAG	5 cut(s)	11, 189, 501, 846, 1153
DpnI	GATC	6 cut(s)	429, 609, 669, 704, 744, 936
DpnII	GATC	6 cut(s)	427, 607, 667, 702, 742, 934
DraIII	CACNNNGTG	1 cut(s)	911
EaeI	YGGCCR	1 cut(s)	596
Ecl136II	GAGCTC	1 cut(s)	1016
Eco24I	GRGCYC	1 cut(s)	1018
Eco31I	GGTCTC	1 cut(s)	991
Eco32I	GATATC	1 cut(s)	1068
Eco53kI	GAGCTC	1 cut(s)	1016
Eco57I	CTGAAG	1 cut(s)	435
Eco81I	CCTNAGG	1 cut(s)	501
EcoICRI	GAGCTC	1 cut(s)	1016
EcoRII	CCWGG	3 cut(s)	970, 1048, 1140
EcoRV	GATATC	1 cut(s)	1068
EcoT22I	ATGCAT	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	1018
FaeI	CATG	7 cut(s)	311, 325, 390, 461, 549, 838, 912
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FatI	CATG	7 cut(s)	307, 321, 386, 457, 545, 834, 908
FauI	CCCGC	1 cut(s)	115
FauNDI	CATATG	1 cut(s)	760
FbaI	TGATCA	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	677
Fnu4HI	GCNGC	1 cut(s)	960
FokI	GGATG	5 cut(s)	482, 520, 677, 949, 1208
FriOI	GRGCYC	1 cut(s)	1018
Fsp4HI	GCNGC	1 cut(s)	960
GluI	GCNGC	1 cut(s)	960
HaeIII	GGCC	2 cut(s)	519, 598
HapII	CCGG	3 cut(s)	480, 656, 884
Hin1II	CATG	7 cut(s)	311, 325, 390, 461, 549, 838, 912
HinfI	GANTC	4 cut(s)	526, 880, 1105, 1151
HpaII	CCGG	3 cut(s)	480, 656, 884
HphI	GGTGA	5 cut(s)	24, 151, 201, 494, 960
Hpy166II	GTNNAC	2 cut(s)	678, 1150
Hpy188I	TCNGA	7 cut(s)	12, 228, 415, 525, 607, 891, 1156
Hpy188III	TCNNGA	3 cut(s)	611, 724, 1175
Hpy8I	GTNNAC	2 cut(s)	678, 1150
HpyAV	CCTTC	6 cut(s)	364, 410, 432, 796, 809, 1084
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4IV	ACGT	1 cut(s)	1183
HpyCH4V	TGCA	8 cut(s)	311, 386, 445, 489, 574, 764, 781, 962
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	5 cut(s)	11, 189, 501, 846, 1153
HpySE526I	ACGT	1 cut(s)	1183
Hsp92II	CATG	7 cut(s)	311, 325, 390, 461, 549, 838, 912
KpnI	GGTACC	2 cut(s)	268, 305
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	6 cut(s)	427, 607, 667, 702, 742, 934
LmnI	GCTCC	4 cut(s)	115, 409, 482, 559
Lsp1109I	GCAGC	1 cut(s)	946
LweI	GCATC	4 cut(s)	264, 373, 971, 1186
MabI	ACCWGGT	1 cut(s)	1140
MaeII	ACGT	1 cut(s)	1183
MaeIII	GTNAC	2 cut(s)	284, 482
MalI	GATC	6 cut(s)	429, 609, 669, 704, 744, 936
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	6 cut(s)	427, 607, 667, 702, 742, 934
MboII	GAAGA	4 cut(s)	165, 198, 746, 1100
MfeI	CAATTG	1 cut(s)	939
MflI	RGATCY	2 cut(s)	702, 742
MhlI	GDGCHC	1 cut(s)	1018
MlsI	TGGCCA	1 cut(s)	598
MluCI	AATT	5 cut(s)	6, 38, 242, 896, 939
MluNI	TGGCCA	1 cut(s)	598
MlyI	GAGTC	1 cut(s)	1145
Mox20I	TGGCCA	1 cut(s)	598
Mph1103I	ATGCAT	1 cut(s)	388
MscI	TGGCCA	1 cut(s)	598
MseI	TTAA	4 cut(s)	96, 150, 471, 1101
Msp20I	TGGCCA	1 cut(s)	598
MspI	CCGG	3 cut(s)	480, 656, 884
MspR9I	CCNGG	4 cut(s)	885, 972, 1050, 1142
MunI	CAATTG	1 cut(s)	939
MvaI	CCWGG	3 cut(s)	972, 1050, 1142
MwoI	GCNNNNNNNGC	1 cut(s)	551
NciI	CCSGG	1 cut(s)	885
NdeI	CATATG	1 cut(s)	760
NdeII	GATC	6 cut(s)	427, 607, 667, 702, 742, 934
NlaIII	CATG	7 cut(s)	311, 325, 390, 461, 549, 838, 912
NlaIV	GGNNCC	6 cut(s)	266, 303, 405, 478, 507, 744
NmuCI	GTSAC	2 cut(s)	284, 482
NsiI	ATGCAT	1 cut(s)	388
NspI	RCATGY	4 cut(s)	311, 390, 549, 838
PciI	ACATGT	1 cut(s)	834
PfeI	GAWTC	3 cut(s)	526, 880, 1105
PkrI	GCNGC	1 cut(s)	961
PleI	GAGTC	1 cut(s)	1145
PpsI	GAGTC	1 cut(s)	1145
PscI	ACATGT	1 cut(s)	834
Psp124BI	GAGCTC	1 cut(s)	1018
Psp6I	CCWGG	3 cut(s)	970, 1048, 1140
PspGI	CCWGG	3 cut(s)	970, 1048, 1140
PspN4I	GGNNCC	6 cut(s)	266, 303, 405, 478, 507, 744
PspPI	GGNCC	1 cut(s)	518
PsuI	RGATCY	2 cut(s)	702, 742
RsaI	GTAC	4 cut(s)	105, 266, 303, 568
RsaNI	GTAC	4 cut(s)	104, 265, 302, 567
SacI	GAGCTC	1 cut(s)	1018
SaqAI	TTAA	4 cut(s)	96, 150, 471, 1101
SatI	GCNGC	1 cut(s)	960
Sau3AI	GATC	6 cut(s)	427, 607, 667, 702, 742, 934
Sau96I	GGNCC	1 cut(s)	518
ScaI	AGTACT	1 cut(s)	568
SchI	GAGTC	1 cut(s)	1145
ScrFI	CCNGG	4 cut(s)	885, 972, 1050, 1142
SduI	GDGCHC	1 cut(s)	1018
SexAI	ACCWGGT	1 cut(s)	1140
SfaNI	GCATC	4 cut(s)	264, 373, 971, 1186
SmlI	CTYRAG	1 cut(s)	1175
SmoI	CTYRAG	1 cut(s)	1175
Sse9I	AATT	5 cut(s)	6, 38, 242, 896, 939
SsiI	CCGC	1 cut(s)	108
SspI	AATATT	2 cut(s)	54, 181
SstI	GAGCTC	1 cut(s)	1018
StyD4I	CCNGG	4 cut(s)	883, 970, 1048, 1140
TaaI	ACNGT	1 cut(s)	571
TaiI	ACGT	1 cut(s)	1186
TaqI	TCGA	1 cut(s)	1070
TasI	AATT	5 cut(s)	6, 38, 242, 896, 939
TatI	WGTACW	1 cut(s)	566
TfiI	GAWTC	3 cut(s)	526, 880, 1105
Tru1I	TTAA	4 cut(s)	96, 150, 471, 1101
Tru9I	TTAA	4 cut(s)	96, 150, 471, 1101
TscAI	CASTG	4 cut(s)	266, 437, 452, 1217
TseFI	GTSAC	2 cut(s)	284, 482
TseI	GCWGC	1 cut(s)	959
Tsp45I	GTSAC	2 cut(s)	284, 482
TspDTI	ATGAA	3 cut(s)	484, 856, 1160
TspRI	CASTG	4 cut(s)	266, 437, 452, 1217
XapI	RAATTY	3 cut(s)	6, 242, 896
XceI	RCATGY	4 cut(s)	311, 390, 549, 838
XmiI	GTMKAC	1 cut(s)	677
ZrmI	AGTACT	1 cut(s)	568
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.