Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007027.1

Orthogroup ID

OG0001402

Physical Location & Seq

Genomic Coordinates Forward (+)

7308 .. 12921

Gene Structure 5614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007027.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atggtgtggttctggccaagttccgatccccaatacaaagatattcttacagagaaaaaacctccctacataccagaaatggatgatccatcatatacttgcttgatggcaaatagagagatcccttacggatatgaggtcttgattgaaaatttaatggatcctgctcatgttccatacgcacattatggaataatacaaactcaacaaccggaagagaaggctgacagagaagggggcagaccagtggacttgtctgttcctaagatagacataaatggtttcaccatagaggagcagaattcgggtcagagtaaatttatgtcaccatgtttgttttatacatctctctttggtccaattgacaatagtaatggggccgcgtcctcgggaaaaccgtatggttatctgaaaccacttggaactgaaaaggtctcatcagcccaaaggggccaaaagagagctcttttagttttcttctgcgttccagttagtccaggtaatagcagaattatatcgaccttgccaataaactttggcatttcggttaagattattccgcgatggatagttcacattcatcacaacctggttttggactcagatttatatctgcttcatcttgaggaacgtaggataatggatgctggtattacccagtggcagaaagcctgttttctgccaacaaagtcagatgcccctgtcgctggtttccgaaagtggttaaacaagtatgcgggtggtcaagtagactggagaggcaagttcactggggcgcttccccccactcctcctaaagaacagttgttggacaggtactggtctcatgtggtgaactgccgcagttgcaatgctgcccacaaagctctaagcgtgcttaaagtcgtattgcaggtcgtctcattttctttacttggaattgtcgctgcaatcaatcaaggagtgctatcatcagtggttgcaagaactgcgctacttgcaacagctctactctgctttgcaggttcaaaatggttggctcattttatctacaaaatctttcactttcacgactacaaccatgcccttatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

357

Amino Acids

40.02

Weight (kDa)

8.7

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25650 AT4G25650
fragaria_vesca	FvH4_3g45360 FvH4_3g45360 FvH4_3g45360 FvH4_3g45400 FvH4_3g45401 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02730 FvH4_7g02730 FvH4_7g02731
malus_domestica	MD03G1005500.v1.1 MD11G1008100.v1.1 MD11G1008200.v1.1
prunus_persica	Prupe.6G005300_v2.0.a1 Prupe.6G005300_v2.0.a1
pyrus_communis	pycom03g00570 pycom11g00550
rosa_chinensis	RchiOBHm_Chr1g0321981 RchiOBHm_Chr5g0083181 RchiOBHm_Chr5g0083211
rosa_laevigata	RLG00000030397 RLG00000030398 RLG00000037017
rosa_multiflora	Rmu_sc0007027.1_g000001 Rmu_sc0028710.1_g000001 Rmu_sc0041156.1_g000001 Rmu_sc0042838.1_g000001 Rmu_ssc0000026.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001290 Rroxscaffold_4G00327380
rosa_rugosa	Rorug01G0034800 Rorug05G0482900 Rorug05G0483300
rosa_samantha	Rh1AG047700 Rh1CG051800 Rh1CG052000 Rh1CG052100 Rh1DG056000 Rh1DG056200 Rh1DG056300 Rh5AG532500 Rh5AG532700 Rh5BG559700 Rh5DG568400
rosa_wichuraiana	Rw1G004350 Rw5G050050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	883, 992
AccI	GTMKAC	1 cut(s)	750
AccII	CGCG	2 cut(s)	383, 562
AciI	CCGC	4 cut(s)	381, 560, 737, 841
AclWI	GGATC	5 cut(s)	20, 80, 115, 155, 168
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	3 cut(s)	151, 301, 317
AfaI	GTAC	1 cut(s)	818
AfiI	CCNNNNNNNGG	2 cut(s)	595, 707
AgsI	TTSAA	2 cut(s)	149, 1008
AjnI	CCWGG	2 cut(s)	496, 588
AluBI	AGCT	3 cut(s)	464, 866, 986
AluI	AGCT	3 cut(s)	464, 866, 986
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	3 cut(s)	439, 828, 904
AlwI	GGATC	5 cut(s)	20, 80, 115, 155, 168
AlwNI	CAGNNNCTG	1 cut(s)	819
Ama87I	CYCGRG	1 cut(s)	388
AoxI	GGCC	3 cut(s)	14, 378, 451
ApeKI	GCWGC	2 cut(s)	854, 926
ApoI	RAATTY	3 cut(s)	151, 301, 317
AspLEI	GCGC	2 cut(s)	778, 973
AspS9I	GGNCC	3 cut(s)	356, 378, 451
AsuHPI	GGTGA	3 cut(s)	277, 318, 844
AvaI	CYCGRG	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	356
BalI	TGGCCA	1 cut(s)	16
BamHI	GGATCC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	2 cut(s)	841, 913
BccI	CCATC	3 cut(s)	97, 100, 558
BciT130I	CCWGG	2 cut(s)	498, 590
BcoDI	GTCTC	3 cut(s)	439, 828, 904
BfoI	RGCGCY	1 cut(s)	779
BfuAI	ACCTGC	2 cut(s)	883, 992
BisI	GCNGC	4 cut(s)	381, 841, 855, 927
BlsI	GCNGC	4 cut(s)	382, 842, 856, 928
Bme1390I	CCNGG	2 cut(s)	498, 590
Bme18I	GGWCC	1 cut(s)	356
BmeT110I	CYCGRG	1 cut(s)	388
BmgT120I	GGNCC	3 cut(s)	356, 378, 451
BmiI	GGNNCC	3 cut(s)	162, 379, 452
BmrFI	CCNGG	2 cut(s)	498, 590
BmrI	ACTGGG	2 cut(s)	652, 780
BmsI	GCATC	2 cut(s)	634, 685
BmuI	ACTGGG	2 cut(s)	652, 780
BpmI	CTGGAG	1 cut(s)	775
BpuEI	CTTGAG	1 cut(s)	644
BsaBI	GATNNNNATC	1 cut(s)	609
BsaI	GGTCTC	2 cut(s)	439, 828
BsaJI	CCNNGG	1 cut(s)	387
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	2 cut(s)	595, 707
Bse1I	ACTGG	6 cut(s)	245, 488, 658, 758, 775, 824
Bse3DI	GCAATG	1 cut(s)	856
Bse8I	GATNNNNATC	1 cut(s)	609
BseBI	CCWGG	2 cut(s)	498, 590
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	2 cut(s)	88, 649
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	2 cut(s)	595, 707
BseMI	GCAATG	1 cut(s)	856
BseMII	CTCAG	1 cut(s)	615
BseNI	ACTGG	6 cut(s)	245, 488, 658, 758, 775, 824
BseRI	GAGGAG	2 cut(s)	308, 780
BseXI	GCAGC	2 cut(s)	841, 913
Bsh1236I	CGCG	2 cut(s)	383, 562
BshFI	GGCC	3 cut(s)	16, 380, 453
BsiHKAI	GWGCWC	1 cut(s)	466
BsiHKCI	CYCGRG	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	595, 707
BsmAI	GTCTC	3 cut(s)	439, 828, 904
BsmBI	CGTCTC	1 cut(s)	904
BsnI	GGCC	3 cut(s)	16, 380, 453
Bso31I	GGTCTC	2 cut(s)	439, 828
BsoBI	CYCGRG	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	4 cut(s)	25, 85, 120, 160
BspACI	CCGC	4 cut(s)	381, 560, 737, 841
BspANI	GGCC	3 cut(s)	16, 380, 453
BspCNI	CTCAG	1 cut(s)	614
BspFNI	CGCG	2 cut(s)	383, 562
BspLI	GGNNCC	3 cut(s)	162, 379, 452
BspMI	ACCTGC	2 cut(s)	883, 992
BspPI	GGATC	5 cut(s)	20, 80, 115, 155, 168
BspTNI	GGTCTC	2 cut(s)	439, 828
BsrDI	GCAATG	1 cut(s)	856
BsrI	ACTGG	6 cut(s)	245, 488, 658, 758, 775, 824
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	4 cut(s)	25, 85, 120, 160
Bst2UI	CCWGG	2 cut(s)	498, 590
Bst4CI	ACNGT	2 cut(s)	399, 804
Bst6I	CTCTTC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	968
BstC8I	GCNNGC	1 cut(s)	875
BstDEI	CTNAG	3 cut(s)	264, 601, 869
BstF5I	GGATG	2 cut(s)	88, 649
BstFNI	CGCG	2 cut(s)	383, 562
BstH2I	RGCGCY	1 cut(s)	779
BstHHI	GCGC	2 cut(s)	778, 973
BstKTI	GATC	4 cut(s)	28, 88, 123, 163
BstMAI	GTCTC	3 cut(s)	439, 828, 904
BstMBI	GATC	4 cut(s)	25, 85, 120, 160
BstMWI	GCNNNNNNNGC	5 cut(s)	704, 846, 863, 968, 977
BstNI	CCWGG	2 cut(s)	498, 590
BstSCI	CCNGG	2 cut(s)	496, 588
BstUI	CGCG	2 cut(s)	383, 562
BstV1I	GCAGC	2 cut(s)	841, 913
BstX2I	RGATCY	2 cut(s)	120, 160
BstYI	RGATCY	2 cut(s)	120, 160
BsuRI	GGCC	3 cut(s)	16, 380, 453
BtgZI	GCGATG	1 cut(s)	577
BtsCI	GGATG	2 cut(s)	88, 649
BtsIMutI	CAGTG	4 cut(s)	252, 665, 768, 960
BveI	ACCTGC	2 cut(s)	883, 992
Cac8I	GCNNGC	1 cut(s)	875
CaiI	CAGNNNCTG	1 cut(s)	819
CfoI	GCGC	2 cut(s)	778, 973
Cfr13I	GGNCC	3 cut(s)	356, 378, 451
CseI	GACGC	1 cut(s)	372
CsiI	ACCWGGT	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	817
CviAII	CATG	4 cut(s)	170, 330, 827, 1061
CviQI	GTAC	1 cut(s)	817
DdeI	CTNAG	3 cut(s)	264, 601, 869
DpnI	GATC	4 cut(s)	27, 87, 122, 162
DpnII	GATC	4 cut(s)	25, 85, 120, 160
EaeI	YGGCCR	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	466
Eco31I	GGTCTC	2 cut(s)	439, 828
Eco47I	GGWCC	1 cut(s)	356
Eco53kI	GAGCTC	1 cut(s)	464
Eco88I	CYCGRG	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	496, 588
EcoT38I	GRGCYC	1 cut(s)	466
Esp3I	CGTCTC	1 cut(s)	904
FaeI	CATG	4 cut(s)	173, 333, 830, 1064
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FatI	CATG	4 cut(s)	169, 329, 826, 1060
FauI	CCCGC	1 cut(s)	730
FblI	GTMKAC	1 cut(s)	750
Fnu4HI	GCNGC	4 cut(s)	381, 841, 855, 927
FokI	GGATG	2 cut(s)	95, 656
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	4 cut(s)	381, 841, 855, 927
GlaI	GCGC	2 cut(s)	777, 972
GluI	GCNGC	4 cut(s)	381, 841, 855, 927
GsuI	CTGGAG	1 cut(s)	775
HaeII	RGCGCY	1 cut(s)	779
HaeIII	GGCC	3 cut(s)	16, 380, 453
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	1 cut(s)	372
HhaI	GCGC	2 cut(s)	778, 973
Hin1II	CATG	4 cut(s)	173, 333, 830, 1064
Hin6I	GCGC	2 cut(s)	776, 971
HinP1I	GCGC	2 cut(s)	776, 971
HinfI	GANTC	1 cut(s)	599
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	3 cut(s)	277, 318, 844
Hpy166II	GTNNAC	5 cut(s)	250, 574, 751, 768, 835
Hpy188I	TCNGA	6 cut(s)	25, 312, 411, 604, 694, 716
Hpy188III	TCNNGA	4 cut(s)	142, 390, 623, 1049
Hpy8I	GTNNAC	5 cut(s)	250, 574, 751, 768, 835
HpyAV	CCTTC	2 cut(s)	214, 227
HpyCH4III	ACNGT	2 cut(s)	399, 804
HpyCH4IV	ACGT	1 cut(s)	631
HpyCH4V	TGCA	6 cut(s)	849, 892, 929, 962, 980, 1001
HpyF10VI	GCNNNNNNNGC	5 cut(s)	704, 846, 863, 968, 977
HpyF3I	CTNAG	3 cut(s)	264, 601, 869
HpySE526I	ACGT	1 cut(s)	631
Hsp92II	CATG	4 cut(s)	173, 333, 830, 1064
HspAI	GCGC	2 cut(s)	776, 971
Kzo9I	GATC	4 cut(s)	25, 85, 120, 160
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	2 cut(s)	841, 913
LweI	GCATC	2 cut(s)	634, 685
MabI	ACCWGGT	1 cut(s)	588
MaeII	ACGT	1 cut(s)	631
MaeIII	GTNAC	1 cut(s)	324
MalI	GATC	4 cut(s)	27, 87, 122, 162
MboI	GATC	4 cut(s)	25, 85, 120, 160
MboII	GAAGA	2 cut(s)	227, 469
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	2 cut(s)	120, 160
MhlI	GDGCHC	1 cut(s)	466
MlsI	TGGCCA	1 cut(s)	16
MluCI	AATT	6 cut(s)	151, 301, 317, 360, 510, 918
MluNI	TGGCCA	1 cut(s)	16
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	789
MnlI	CCTC	7 cut(s)	72, 130, 286, 397, 619, 752, 801
Mox20I	TGGCCA	1 cut(s)	16
MscI	TGGCCA	1 cut(s)	16
MseI	TTAA	4 cut(s)	155, 549, 725, 879
Msp20I	TGGCCA	1 cut(s)	16
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	498, 590
MunI	CAATTG	1 cut(s)	360
MvaI	CCWGG	2 cut(s)	498, 590
MvnI	CGCG	2 cut(s)	383, 562
MwoI	GCNNNNNNNGC	5 cut(s)	704, 846, 863, 968, 977
NdeII	GATC	4 cut(s)	25, 85, 120, 160
NlaIII	CATG	4 cut(s)	173, 333, 830, 1064
NlaIV	GGNNCC	3 cut(s)	162, 379, 452
NmuCI	GTSAC	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	395
PkrI	GCNGC	4 cut(s)	382, 842, 856, 928
PleI	GAGTC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	593
Psp124BI	GAGCTC	1 cut(s)	466
Psp6I	CCWGG	2 cut(s)	496, 588
PspGI	CCWGG	2 cut(s)	496, 588
PspN4I	GGNNCC	3 cut(s)	162, 379, 452
PspPI	GGNCC	3 cut(s)	356, 378, 451
PstNI	CAGNNNCTG	1 cut(s)	819
PsuI	RGATCY	2 cut(s)	120, 160
RsaI	GTAC	1 cut(s)	818
RsaNI	GTAC	1 cut(s)	817
SacI	GAGCTC	1 cut(s)	466
SaqAI	TTAA	4 cut(s)	155, 549, 725, 879
SatI	GCNGC	4 cut(s)	381, 841, 855, 927
Sau3AI	GATC	4 cut(s)	25, 85, 120, 160
Sau96I	GGNCC	3 cut(s)	356, 378, 451
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	2 cut(s)	498, 590
SduI	GDGCHC	1 cut(s)	466
SexAI	ACCWGGT	1 cut(s)	588
SfaNI	GCATC	2 cut(s)	634, 685
SinI	GGWCC	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
Sse9I	AATT	6 cut(s)	151, 301, 317, 360, 510, 918
SsiI	CCGC	4 cut(s)	381, 560, 737, 841
SstI	GAGCTC	1 cut(s)	466
StyD4I	CCNGG	2 cut(s)	496, 588
TaaI	ACNGT	2 cut(s)	399, 804
TaiI	ACGT	1 cut(s)	634
TaqI	TCGA	1 cut(s)	518
TasI	AATT	6 cut(s)	151, 301, 317, 360, 510, 918
TauI	GCSGC	2 cut(s)	383, 843
Tru1I	TTAA	4 cut(s)	155, 549, 725, 879
Tru9I	TTAA	4 cut(s)	155, 549, 725, 879
TscAI	CASTG	4 cut(s)	252, 665, 775, 960
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	2 cut(s)	854, 926
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	2 cut(s)	569, 608
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	4 cut(s)	252, 665, 775, 960
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	3 cut(s)	151, 301, 317
XmiI	GTMKAC	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.