RLG00000037017

Protochlorophyllide-dependent translocon component 52

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
87584705 .. 87588823
4119 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037017

Sequence Viewer

Length: 1623 bp
ATGGAAATTCTGAGAACTTCCTCTATTCCCTCACCACAATTTCCAGCTAAATTTGACAAAACCCAATCCAAAAAACTCACTTTCTTGGGGTTTAAGCAAGTACCCGCTTCATCGTTCTCATTAGTTCAAAGACACAGACCCACATTTAAGACATTCACCACCATATCATCTTCTAATATTACAACTGAAACTGAAAACCCATCTGAACCACAAGTTGAAAATCAGACCCCAGATGATAAATTTGACTGGTATGCCCACTGGTACCCATTGATGCCAGTTTGTGACCTTGACAAAAGGGTACCACATGCAAAGAAAGTTATGGGTATTGATGTGGTGGTGTGGTGGGATAGAAATGAGAGTGCATGGAAGGTCTTTGATGATGCATGTCCTCACAGACTGGCTCCATTATCTGAAGGGAGGATTGATCAGTGGGGAAGGTTGCAGTGTGTTTATCATGGCTGGTGTTTTAATGGCTCCGGTGACTGCAAGTTCATCCCTCAGGCACCTACCGATGGCCCTCCGATTCACACATCCAAGAAAGCATGTGTAGCTCCTTATCCAAGTACTGTGCAGAATGGAATAGTGTGGTTCTGGCCAAGTTCCGATCCTGAATACAAAGATATTCTTACAGAGAAAAAACCTCCCTACATACCGGAACTGGATGATCCCTCGTATACTTGCTTGATGGGAAATAGAGAGATCCCTTACGGGTATGAGGTCTTGATTGAAAATCTTATGGATCCTGCTCATCTTCCATATGCACATTATGGAATAATGCAAACTCAACAACCGAAAGAGAAGGCTGATAGAGAAGGGGGCAGACCATTAGACATGTATGTTCCTAAGTTAGACATAAATGGTTTTATCGCAGAGCAGAATCCGGGTCAGAGTAAATTTGTGCCACCATGTGTGTTTTATGTTTCTCTCTTTGATCCAATTGACAATAGTAATGGGGCTGCATCCTCACCTGGAACTGAAAAGGTCTCATTAGCCCAAAACAGCCAAAAGAGAGCTCTTTTAGTTTTTATATGCGTTCCAGTAAGTCCAGGTAATAGCAGATTGATATCGACCTTCCCAGAAAACTTTGGTGTTTGGATTAAGATTCTTCCCCGATGGATATATCACATTGGACAAAACCTGGTTGTGGACTCAGATTTATATTTGCTTCATCTTGAGGAACGTAGGATAATGGATGCTGGTCTTACCCAGTGGCAGAAAGCCTGTTTTGTGCCAACAAAGTCAGATGCCGTTGTCATTGGTTTCCGAAAGTGGTTAAACAAGTATGCAGGGGGTCAAGTAGACTGGAGAGGCAAGTTCACAGGGGCTCTTCCCCCTACTCCTCCTAAAGAACAGTTGTTGGACAGGTACTGGTCTCATGTGGTGAACTGCAGCAGTTGCAATGCTGCCCACAAAGCTCTGTGCATGCTTGAAGTTGTATTGCAGGTCGTCTCATTTTCTTTACTCGGAATTGCCGCTGCAATCAAGCAAGGAGTGCTATCATCAGTGGTTGCGAGAACTGCGCTAGTTGCAACAGCTCTACTCTGCTTTGCGGCTTCAAAATGGTTGGCTCATTTTATCTACAAAACTTTTCACTTTCACGACTACAACCATGCCCTTGTGTAA

Protein Analysis

541

Amino Acids

60.91

Weight (kDa)

7.86

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske PF00355 86 - 169 1.4e-23 Rieske [2Fe-2S] domain
PaO PF08417 299 - 400 1.5e-24 Pheophorbide a oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1432
Acc65I GGTACC 2 cut(s) 261, 298
AccB1I GGYRCC 3 cut(s) 261, 298, 502
AccI GTMKAC 2 cut(s) 674, 1299
AciI CCGC 3 cut(s) 105, 1473, 1550
AclWI GGATC 6 cut(s) 599, 659, 694, 734, 747, 926
AcoI YGGCCR 1 cut(s) 593
AcsI RAATTY 4 cut(s) 6, 50, 239, 893
AcuI CTGAAG 1 cut(s) 432
AdeI CACNNNGTG 1 cut(s) 908
AfaI GTAC 5 cut(s) 102, 263, 300, 565, 1367
AfiI CCNNNNNNNGG 2 cut(s) 512, 1144
AflIII ACRYGT 1 cut(s) 831
AgsI TTSAA 5 cut(s) 128, 218, 728, 1430, 1557
AjnI CCWGG 3 cut(s) 967, 1045, 1137
AluBI AGCT 5 cut(s) 47, 551, 1013, 1415, 1535
AluI AGCT 5 cut(s) 47, 551, 1013, 1415, 1535
Alw21I GWGCWC 1 cut(s) 1015
Alw26I GTCTC 3 cut(s) 988, 1377, 1453
AlwI GGATC 6 cut(s) 599, 659, 694, 734, 747, 926
AlwNI CAGNNNCTG 1 cut(s) 1368
AoxI GGCC 2 cut(s) 514, 593
ApeKI GCWGC 4 cut(s) 956, 1389, 1403, 1475
ApoI RAATTY 4 cut(s) 6, 50, 239, 893
Asp718I GGTACC 2 cut(s) 261, 298
AspLEI GCGC 1 cut(s) 1522
AspS9I GGNCC 1 cut(s) 515
AsuC2I CCSGG 1 cut(s) 882
AsuHPI GGTGA 5 cut(s) 24, 148, 491, 957, 1393
AxyI CCTNAGG 1 cut(s) 498
BalI TGGCCA 1 cut(s) 595
BamHI GGATCC 1 cut(s) 739
BanI GGYRCC 3 cut(s) 261, 298, 502
BanII GRGCYC 2 cut(s) 1015, 1327
Bbv12I GWGCWC 1 cut(s) 1015
BbvI GCAGC 4 cut(s) 943, 1390, 1401, 1462
BccI CCATC 4 cut(s) 208, 506, 679, 1107
BceAI ACGGC 1 cut(s) 1232
BciT130I CCWGG 3 cut(s) 969, 1047, 1139
BclI TGATCA 1 cut(s) 424
BcnI CCSGG 1 cut(s) 882
BcoDI GTCTC 3 cut(s) 988, 1377, 1453
BfaI CTAG 1 cut(s) 1523
BfmI CTRYAG 1 cut(s) 1387
BfuAI ACCTGC 1 cut(s) 1432
BisI GCNGC 6 cut(s) 957, 1390, 1404, 1473, 1476, 1551
BlsI GCNGC 6 cut(s) 958, 1391, 1405, 1474, 1477, 1552
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 4 cut(s) 882, 969, 1047, 1139
BmgT120I GGNCC 1 cut(s) 515
BmiI GGNNCC 6 cut(s) 263, 300, 402, 475, 504, 741
BmrFI CCNGG 4 cut(s) 882, 969, 1047, 1139
BmrI ACTGGG 1 cut(s) 1201
BmsI GCATC 5 cut(s) 261, 370, 968, 1183, 1234
BmuI ACTGGG 1 cut(s) 1201
BpmI CTGGAG 1 cut(s) 1324
BpuEI CTTGAG 1 cut(s) 1193
BpuMI CCSGG 1 cut(s) 882
BsaBI GATNNNNATC 1 cut(s) 1063
BsaI GGTCTC 2 cut(s) 988, 1377
BsaWI WCCGGW 2 cut(s) 476, 652
Bsc4I CCNNNNNNNGG 2 cut(s) 512, 1144
Bse1I ACTGG 9 cut(s) 251, 263, 275, 402, 663, 1037, 1207, 1307, 1373
Bse21I CCTNAGG 1 cut(s) 498
Bse3DI GCAATG 1 cut(s) 1405
Bse8I GATNNNNATC 1 cut(s) 1063
BseBI CCWGG 3 cut(s) 969, 1047, 1139
BseGI GGATG 5 cut(s) 492, 530, 667, 959, 1198
BseJI GATNNNNATC 1 cut(s) 1063
BseLI CCNNNNNNNGG 2 cut(s) 512, 1144
BseMI GCAATG 1 cut(s) 1405
BseMII CTCAG 2 cut(s) 512, 1164
BseNI ACTGG 9 cut(s) 251, 263, 275, 402, 663, 1037, 1207, 1307, 1373
BseRI GAGGAG 1 cut(s) 1329
BseXI GCAGC 4 cut(s) 943, 1390, 1401, 1462
BsgI GTGCAG 1 cut(s) 590
BshFI GGCC 2 cut(s) 516, 595
BshNI GGYRCC 3 cut(s) 261, 298, 502
BsiHKAI GWGCWC 1 cut(s) 1015
BsiSI CCGG 3 cut(s) 477, 653, 881
BslI CCNNNNNNNGG 2 cut(s) 512, 1144
BsmAI GTCTC 3 cut(s) 988, 1377, 1453
BsmBI CGTCTC 1 cut(s) 1453
BsnI GGCC 2 cut(s) 516, 595
Bso31I GGTCTC 2 cut(s) 988, 1377
Bsp1286I GDGCHC 2 cut(s) 1015, 1327
Bsp143I GATC 6 cut(s) 424, 604, 664, 699, 739, 931
BspACI CCGC 3 cut(s) 105, 1473, 1550
BspANI GGCC 2 cut(s) 516, 595
BspCNI CTCAG 2 cut(s) 511, 1163
BspLI GGNNCC 6 cut(s) 263, 300, 402, 475, 504, 741
BspMAI CTGCAG 1 cut(s) 1391
BspMI ACCTGC 1 cut(s) 1432
BspPI GGATC 6 cut(s) 599, 659, 694, 734, 747, 926
BspQI GCTCTTC 1 cut(s) 1332
BspT107I GGYRCC 3 cut(s) 261, 298, 502
BspTNI GGTCTC 2 cut(s) 988, 1377
BsrDI GCAATG 1 cut(s) 1405
BsrI ACTGG 9 cut(s) 251, 263, 275, 402, 663, 1037, 1207, 1307, 1373
BssMI GATC 6 cut(s) 424, 604, 664, 699, 739, 931
BssNAI GTATAC 1 cut(s) 675
Bst1107I GTATAC 1 cut(s) 675
Bst2UI CCWGG 3 cut(s) 969, 1047, 1139
Bst4CI ACNGT 2 cut(s) 568, 1353
Bst6I CTCTTC 1 cut(s) 1332
BstAPI GCANNNNNTGC 2 cut(s) 1395, 1492
BstC8I GCNNGC 1 cut(s) 1424
BstDEI CTNAG 4 cut(s) 11, 498, 843, 1150
BstF5I GGATG 5 cut(s) 492, 530, 667, 959, 1198
BstHHI GCGC 1 cut(s) 1522
BstKTI GATC 6 cut(s) 427, 607, 667, 702, 742, 934
BstMAI GTCTC 3 cut(s) 988, 1377, 1453
BstMBI GATC 6 cut(s) 424, 604, 664, 699, 739, 931
BstMWI GCNNNNNNNGC 6 cut(s) 548, 1395, 1412, 1492, 1517, 1526
BstNI CCWGG 3 cut(s) 969, 1047, 1139
BstNSI RCATGY 5 cut(s) 308, 387, 546, 835, 1426
BstSCI CCNGG 4 cut(s) 880, 967, 1045, 1137
BstSFI CTRYAG 1 cut(s) 1387
BstV1I GCAGC 4 cut(s) 943, 1390, 1401, 1462
BstX2I RGATCY 2 cut(s) 699, 739
BstYI RGATCY 2 cut(s) 699, 739
BstZ17I GTATAC 1 cut(s) 675
Bsu36I CCTNAGG 1 cut(s) 498
BsuRI GGCC 2 cut(s) 516, 595
BtsCI GGATG 5 cut(s) 492, 530, 667, 959, 1198
BtsI GCAGTG 1 cut(s) 449
BtsIMutI CAGTG 5 cut(s) 256, 434, 449, 1214, 1509
BveI ACCTGC 1 cut(s) 1432
Cac8I GCNNGC 1 cut(s) 1424
CaiI CAGNNNCTG 1 cut(s) 1368
CfoI GCGC 1 cut(s) 1522
Cfr13I GGNCC 1 cut(s) 515
CsiI ACCWGGT 1 cut(s) 1137
Csp6I GTAC 5 cut(s) 101, 262, 299, 564, 1366
CviQI GTAC 5 cut(s) 101, 262, 299, 564, 1366
DdeI CTNAG 4 cut(s) 11, 498, 843, 1150
DpnI GATC 6 cut(s) 426, 606, 666, 701, 741, 933
DpnII GATC 6 cut(s) 424, 604, 664, 699, 739, 931
DraIII CACNNNGTG 1 cut(s) 908
EaeI YGGCCR 1 cut(s) 593
Eam1104I CTCTTC 1 cut(s) 1332
EarI CTCTTC 1 cut(s) 1332
Ecl136II GAGCTC 1 cut(s) 1013
Eco24I GRGCYC 2 cut(s) 1015, 1327
Eco31I GGTCTC 2 cut(s) 988, 1377
Eco32I GATATC 1 cut(s) 1065
Eco53kI GAGCTC 1 cut(s) 1013
Eco57I CTGAAG 1 cut(s) 432
Eco81I CCTNAGG 1 cut(s) 498
EcoICRI GAGCTC 1 cut(s) 1013
EcoRII CCWGG 3 cut(s) 967, 1045, 1137
EcoRV GATATC 1 cut(s) 1065
EcoT22I ATGCAT 1 cut(s) 385
EcoT38I GRGCYC 2 cut(s) 1015, 1327
Esp3I CGTCTC 1 cut(s) 1453
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FauI CCCGC 1 cut(s) 112
FauNDI CATATG 1 cut(s) 757
FbaI TGATCA 1 cut(s) 424
FblI GTMKAC 2 cut(s) 674, 1299
Fnu4HI GCNGC 6 cut(s) 957, 1390, 1404, 1473, 1476, 1551
FokI GGATG 5 cut(s) 479, 517, 674, 946, 1205
FriOI GRGCYC 2 cut(s) 1015, 1327
Fsp4HI GCNGC 6 cut(s) 957, 1390, 1404, 1473, 1476, 1551
FspBI CTAG 1 cut(s) 1523
GlaI GCGC 1 cut(s) 1521
GluI GCNGC 6 cut(s) 957, 1390, 1404, 1473, 1476, 1551
GsuI CTGGAG 1 cut(s) 1324
HaeIII GGCC 2 cut(s) 516, 595
HapII CCGG 3 cut(s) 477, 653, 881
HhaI GCGC 1 cut(s) 1522
Hin6I GCGC 1 cut(s) 1520
HinP1I GCGC 1 cut(s) 1520
HinfI GANTC 4 cut(s) 523, 877, 1102, 1148
HpaII CCGG 3 cut(s) 477, 653, 881
HphI GGTGA 5 cut(s) 24, 148, 491, 957, 1393
Hpy166II GTNNAC 5 cut(s) 675, 1147, 1300, 1317, 1384
Hpy188III TCNNGA 4 cut(s) 608, 721, 1172, 1598
Hpy8I GTNNAC 5 cut(s) 675, 1147, 1300, 1317, 1384
HpyAV CCTTC 6 cut(s) 361, 407, 429, 793, 806, 1081
HpyCH4III ACNGT 2 cut(s) 568, 1353
HpyCH4IV ACGT 1 cut(s) 1180
HpyF10VI GCNNNNNNNGC 6 cut(s) 548, 1395, 1412, 1492, 1517, 1526
HpyF3I CTNAG 4 cut(s) 11, 498, 843, 1150
HpySE526I ACGT 1 cut(s) 1180
HspAI GCGC 1 cut(s) 1520
KpnI GGTACC 2 cut(s) 265, 302
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 6 cut(s) 424, 604, 664, 699, 739, 931
LguI GCTCTTC 1 cut(s) 1332
LmnI GCTCC 3 cut(s) 406, 479, 556
Lsp1109I GCAGC 4 cut(s) 943, 1390, 1401, 1462
LweI GCATC 5 cut(s) 261, 370, 968, 1183, 1234
MabI ACCWGGT 1 cut(s) 1137
MaeI CTAG 1 cut(s) 1523
MaeII ACGT 1 cut(s) 1180
MaeIII GTNAC 2 cut(s) 281, 479
MalI GATC 6 cut(s) 426, 606, 666, 701, 741, 933
MboI GATC 6 cut(s) 424, 604, 664, 699, 739, 931
MboII GAAGA 4 cut(s) 162, 743, 1097, 1319
MfeI CAATTG 1 cut(s) 936
MflI RGATCY 2 cut(s) 699, 739
MhlI GDGCHC 2 cut(s) 1015, 1327
MlsI TGGCCA 1 cut(s) 595
MluCI AATT 7 cut(s) 6, 38, 50, 239, 893, 936, 1467
MluNI TGGCCA 1 cut(s) 595
MlyI GAGTC 1 cut(s) 1142
MmeI TCCRAC 1 cut(s) 1338
Mox20I TGGCCA 1 cut(s) 595
Mph1103I ATGCAT 1 cut(s) 385
MscI TGGCCA 1 cut(s) 595
MseI TTAA 5 cut(s) 93, 147, 468, 1098, 1274
Msp20I TGGCCA 1 cut(s) 595
MspA1I CMGCKG 1 cut(s) 1475
MspI CCGG 3 cut(s) 477, 653, 881
MspR9I CCNGG 4 cut(s) 882, 969, 1047, 1139
MunI CAATTG 1 cut(s) 936
MvaI CCWGG 3 cut(s) 969, 1047, 1139
MwoI GCNNNNNNNGC 6 cut(s) 548, 1395, 1412, 1492, 1517, 1526
NciI CCSGG 1 cut(s) 882
NdeI CATATG 1 cut(s) 757
NdeII GATC 6 cut(s) 424, 604, 664, 699, 739, 931
NlaIV GGNNCC 6 cut(s) 263, 300, 402, 475, 504, 741
NmuCI GTSAC 2 cut(s) 281, 479
NsiI ATGCAT 1 cut(s) 385
NspI RCATGY 5 cut(s) 308, 387, 546, 835, 1426
PaeI GCATGC 1 cut(s) 1426
PciI ACATGT 1 cut(s) 831
PciSI GCTCTTC 1 cut(s) 1332
PfeI GAWTC 3 cut(s) 523, 877, 1102
PkrI GCNGC 6 cut(s) 958, 1391, 1405, 1474, 1477, 1552
PleI GAGTC 1 cut(s) 1142
PpsI GAGTC 1 cut(s) 1142
PscI ACATGT 1 cut(s) 831
Psp124BI GAGCTC 1 cut(s) 1015
Psp6I CCWGG 3 cut(s) 967, 1045, 1137
PspGI CCWGG 3 cut(s) 967, 1045, 1137
PspN4I GGNNCC 6 cut(s) 263, 300, 402, 475, 504, 741
PspPI GGNCC 1 cut(s) 515
PstI CTGCAG 1 cut(s) 1391
PstNI CAGNNNCTG 1 cut(s) 1368
PsuI RGATCY 2 cut(s) 699, 739
RsaI GTAC 5 cut(s) 102, 263, 300, 565, 1367
RsaNI GTAC 5 cut(s) 101, 262, 299, 564, 1366
SacI GAGCTC 1 cut(s) 1015
SapI GCTCTTC 1 cut(s) 1332
SaqAI TTAA 5 cut(s) 93, 147, 468, 1098, 1274
SatI GCNGC 6 cut(s) 957, 1390, 1404, 1473, 1476, 1551
Sau3AI GATC 6 cut(s) 424, 604, 664, 699, 739, 931
Sau96I GGNCC 1 cut(s) 515
ScaI AGTACT 1 cut(s) 565
SchI GAGTC 1 cut(s) 1142
ScrFI CCNGG 4 cut(s) 882, 969, 1047, 1139
SduI GDGCHC 2 cut(s) 1015, 1327
SexAI ACCWGGT 1 cut(s) 1137
SfaNI GCATC 5 cut(s) 261, 370, 968, 1183, 1234
SfcI CTRYAG 1 cut(s) 1387
SmlI CTYRAG 1 cut(s) 1172
SmoI CTYRAG 1 cut(s) 1172
SphI GCATGC 1 cut(s) 1426
Sse9I AATT 7 cut(s) 6, 38, 50, 239, 893, 936, 1467
SsiI CCGC 3 cut(s) 105, 1473, 1550
SspI AATATT 1 cut(s) 178
SspMI CTAG 1 cut(s) 1523
SstI GAGCTC 1 cut(s) 1015
StyD4I CCNGG 4 cut(s) 880, 967, 1045, 1137
TaaI ACNGT 2 cut(s) 568, 1353
TaiI ACGT 1 cut(s) 1183
TaqI TCGA 1 cut(s) 1067
TasI AATT 7 cut(s) 6, 38, 50, 239, 893, 936, 1467
TatI WGTACW 1 cut(s) 563
TauI GCSGC 2 cut(s) 1475, 1553
TfiI GAWTC 3 cut(s) 523, 877, 1102
Tru1I TTAA 5 cut(s) 93, 147, 468, 1098, 1274
Tru9I TTAA 5 cut(s) 93, 147, 468, 1098, 1274
TscAI CASTG 5 cut(s) 263, 434, 449, 1214, 1509
TseFI GTSAC 2 cut(s) 281, 479
TseI GCWGC 4 cut(s) 956, 1389, 1403, 1475
Tsp45I GTSAC 2 cut(s) 281, 479
TspDTI ATGAA 3 cut(s) 99, 481, 1157
TspRI CASTG 5 cut(s) 263, 434, 449, 1214, 1509
XapI RAATTY 4 cut(s) 6, 50, 239, 893
XceI RCATGY 5 cut(s) 308, 387, 546, 835, 1426
XmiI GTMKAC 2 cut(s) 674, 1299
XspI CTAG 1 cut(s) 1523
ZrmI AGTACT 1 cut(s) 565
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.