Rroxscaffold_4G00327380

Protochlorophyllide-dependent translocon component 52

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
60070800 .. 60075517
4718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00327380.1

Sequence Viewer

Length: 1455 bp
ATGGAAACACTGAGAATTTCCTGTATTCCAACATTACAAATTCCAGCTGACTTTGGTAAAACCCAATCCAAAAAATTCACTTTCTTGGGGTATAAGCAAACACTCACTTCATCATTCTCGTTAGTTGAAAGACACAAACCCTCATTTAAGACATTCACCACTAAATCGGCTTCTATTACAACTGAGACTGAAAACCCATCTGCACCACAAGTTGAAACTCAGACCCAAGATGAAAAATTTGACTGGTATGCCCATTGGTACCCGTTGATGCCAGTTTGTGACCTTGACAGAAGGGTACCACATGCAAAGAAAGTTCTGGGTATTGATGTGGTGGTGTGGTGGGACAGAAATGCGAGTACATGGAAGGTGTTTGACGATGCATGTCCTCACAGACTGGCTCCATTATCTGAAGGAAGGATTGATCAGTGGGGAAGGTTGCAGTGTGTTTATCATGGCTGGTGCTTTAATGGCTCCGGTGACTGCAAGTTCATCCCTCAGGCACCTACGGATGGTCCTCCGATTCACACATCCAAAAAAGCATGTGTAAGTGCTTATCCAAGTACTGTGCAGAATGGAATGGTGTGGTTCTGGCCAAGTTCCGATCCCCAATACAAAGATATTCTTACAGAGAAAAAACCTCCCTACATACCAGAAATGGATGATCCATCATATACTTGCTTGATGGCAAATAGAGAGATCCCTTACGGATATGAGGTCTTGATTGAAAATTTAATGGATCCTGCTCATGTTCCATACGCACATTATGGAATAATACAAACTCAACAACCGGAAGAGAAGGCTGACAGAGAAGGGGGCAGACCAGTGGACTTGTCTGTTCCTAAGATAGACATAAATGGTTTCACCATAGAGGAGCAGAATTCGGGTCAGAGTAAATTTATGTCACCATGTTTGTTTTATACATCTCTCTTTGGTCCAATTGACAATAGTAATGGGGCCGCGTCCTCGGGAAAACCGTATAGTTTTCTGAAACCACTTGGAACTGAAAAGGTCTCATCAGCCCAAAGGGGCCAAAAGAGAGCTCTTTTAGTTTTCTTCTGCGTTCCAGTTAGTCCAGGCAAAAGCAGAATTATATCGACCTTGCCAATAAACTTTGGCATTTCGGTTAAGATTATTCCGCGATGGATAGTTCACATTCATCACAACCTGGTTTTGGACTCAGATTTATATCTGCTTCATCTTGAGGAACATAGGATAATGGATGCTGGTATTACCCAGTGGCAGAAAGCCTGTTATTTGCCAACAAAGTCCGATGCCGCTGTCGTTGGTTTCCGAAAGTGGTTAAACAAGTATGCGGGTGGTCAAGTAGATTGGAGAGGCAAGTTCACTGGGGTGCTTCCCCACTCCTCCAAAAGAACAGTTGTTGGACAGGTACCAGTCTCATGTGGTGAACTGCCGCAGTTGCAATGCTGCCCACAAAGCTCTGAGCGTGCTTAA

Protein Analysis

484

Amino Acids

54.49

Weight (kDa)

8.27

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske PF00355 85 - 168 3.4e-23 Rieske [2Fe-2S] domain
PaO PF08417 299 - 409 8.4e-20 Pheophorbide a oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 3 cut(s) 258, 295, 1390
AccB1I GGYRCC 4 cut(s) 258, 295, 499, 1390
AccII CGCG 2 cut(s) 959, 1138
AciI CCGC 5 cut(s) 957, 1136, 1275, 1313, 1415
AclWI GGATC 5 cut(s) 596, 656, 691, 731, 744
AcoI YGGCCR 1 cut(s) 590
AcsI RAATTY 7 cut(s) 15, 39, 74, 236, 727, 877, 893
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 5 cut(s) 260, 297, 358, 562, 1392
AfiI CCNNNNNNNGG 2 cut(s) 509, 1171
AgsI TTSAA 3 cut(s) 128, 215, 725
AjnI CCWGG 2 cut(s) 1072, 1164
AleI CACNNNNGTG 1 cut(s) 1349
AluBI AGCT 3 cut(s) 47, 1040, 1440
AluI AGCT 3 cut(s) 47, 1040, 1440
Alw21I GWGCWC 1 cut(s) 1042
Alw26I GTCTC 3 cut(s) 179, 1015, 1402
AlwI GGATC 5 cut(s) 596, 656, 691, 731, 744
Ama87I CYCGRG 1 cut(s) 964
AoxI GGCC 3 cut(s) 590, 954, 1027
ApeKI GCWGC 1 cut(s) 1428
ApoI RAATTY 7 cut(s) 15, 39, 74, 236, 727, 877, 893
Asp718I GGTACC 3 cut(s) 258, 295, 1390
AspS9I GGNCC 4 cut(s) 512, 932, 954, 1027
AsuHPI GGTGA 5 cut(s) 148, 488, 853, 894, 1418
AvaI CYCGRG 1 cut(s) 964
AvaII GGWCC 2 cut(s) 512, 932
AxyI CCTNAGG 1 cut(s) 495
BalI TGGCCA 1 cut(s) 592
BamHI GGATCC 1 cut(s) 736
BanI GGYRCC 4 cut(s) 258, 295, 499, 1390
BanII GRGCYC 1 cut(s) 1042
Bbv12I GWGCWC 1 cut(s) 1042
BbvI GCAGC 1 cut(s) 1415
BccI CCATC 5 cut(s) 205, 503, 673, 676, 1134
BciT130I CCWGG 2 cut(s) 1074, 1166
BclI TGATCA 1 cut(s) 421
BcoDI GTCTC 3 cut(s) 179, 1015, 1402
BisI GCNGC 4 cut(s) 957, 1275, 1415, 1429
BlsI GCNGC 4 cut(s) 958, 1276, 1416, 1430
BmcAI AGTACT 1 cut(s) 562
Bme1390I CCNGG 2 cut(s) 1074, 1166
Bme18I GGWCC 2 cut(s) 512, 932
BmeT110I CYCGRG 1 cut(s) 964
BmgT120I GGNCC 4 cut(s) 512, 932, 954, 1027
BmiI GGNNCC 9 cut(s) 260, 297, 399, 472, 501, 738, 955, 1028, 1392
BmrFI CCNGG 2 cut(s) 1074, 1166
BmrI ACTGGG 2 cut(s) 1228, 1356
BmsI GCATC 4 cut(s) 258, 367, 1210, 1261
BmuI ACTGGG 2 cut(s) 1228, 1356
BpuEI CTTGAG 1 cut(s) 1220
BsaBI GATNNNNATC 1 cut(s) 1185
BsaI GGTCTC 1 cut(s) 1015
BsaJI CCNNGG 1 cut(s) 963
BsaWI WCCGGW 2 cut(s) 473, 787
Bsc4I CCNNNNNNNGG 2 cut(s) 509, 1171
Bse1I ACTGG 8 cut(s) 248, 272, 399, 821, 1064, 1234, 1351, 1394
Bse21I CCTNAGG 1 cut(s) 495
Bse3DI GCAATG 1 cut(s) 1430
Bse8I GATNNNNATC 1 cut(s) 1185
BseBI CCWGG 2 cut(s) 1074, 1166
BseDI CCNNGG 1 cut(s) 963
BseGI GGATG 5 cut(s) 489, 514, 527, 664, 1225
BseJI GATNNNNATC 1 cut(s) 1185
BseLI CCNNNNNNNGG 2 cut(s) 509, 1171
BseMI GCAATG 1 cut(s) 1430
BseMII CTCAG 5 cut(s) 174, 233, 509, 1191, 1434
BseNI ACTGG 8 cut(s) 248, 272, 399, 821, 1064, 1234, 1351, 1394
BseRI GAGGAG 2 cut(s) 884, 1354
BseXI GCAGC 1 cut(s) 1415
BsgI GTGCAG 2 cut(s) 186, 587
Bsh1236I CGCG 2 cut(s) 959, 1138
BshFI GGCC 3 cut(s) 592, 956, 1029
BshNI GGYRCC 4 cut(s) 258, 295, 499, 1390
BsiHKAI GWGCWC 1 cut(s) 1042
BsiHKCI CYCGRG 1 cut(s) 964
BsiSI CCGG 2 cut(s) 474, 788
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 2 cut(s) 509, 1171
BsmAI GTCTC 3 cut(s) 179, 1015, 1402
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 3 cut(s) 592, 956, 1029
Bso31I GGTCTC 1 cut(s) 1015
BsoBI CYCGRG 1 cut(s) 964
Bsp1286I GDGCHC 1 cut(s) 1042
Bsp143I GATC 5 cut(s) 421, 601, 661, 696, 736
BspACI CCGC 5 cut(s) 957, 1136, 1275, 1313, 1415
BspANI GGCC 3 cut(s) 592, 956, 1029
BspCNI CTCAG 5 cut(s) 175, 232, 508, 1190, 1435
BspFNI CGCG 2 cut(s) 959, 1138
BspLI GGNNCC 9 cut(s) 260, 297, 399, 472, 501, 738, 955, 1028, 1392
BspPI GGATC 5 cut(s) 596, 656, 691, 731, 744
BspT107I GGYRCC 4 cut(s) 258, 295, 499, 1390
BspTNI GGTCTC 1 cut(s) 1015
BsrDI GCAATG 1 cut(s) 1430
BsrI ACTGG 8 cut(s) 248, 272, 399, 821, 1064, 1234, 1351, 1394
BssECI CCNNGG 1 cut(s) 963
BssMI GATC 5 cut(s) 421, 601, 661, 696, 736
Bst2UI CCWGG 2 cut(s) 1074, 1166
Bst4CI ACNGT 3 cut(s) 565, 975, 1378
Bst6I CTCTTC 1 cut(s) 786
BstC8I GCNNGC 1 cut(s) 1449
BstDEI CTNAG 7 cut(s) 11, 183, 219, 495, 840, 1177, 1443
BstF5I GGATG 5 cut(s) 489, 514, 527, 664, 1225
BstFNI CGCG 2 cut(s) 959, 1138
BstKTI GATC 5 cut(s) 424, 604, 664, 699, 739
BstMAI GTCTC 3 cut(s) 179, 1015, 1402
BstMBI GATC 5 cut(s) 421, 601, 661, 696, 736
BstMWI GCNNNNNNNGC 3 cut(s) 468, 1420, 1437
BstNI CCWGG 2 cut(s) 1074, 1166
BstNSI RCATGY 3 cut(s) 305, 384, 543
BstSCI CCNGG 2 cut(s) 1072, 1164
BstUI CGCG 2 cut(s) 959, 1138
BstV1I GCAGC 1 cut(s) 1415
BstX2I RGATCY 2 cut(s) 696, 736
BstYI RGATCY 2 cut(s) 696, 736
Bsu36I CCTNAGG 1 cut(s) 495
BsuRI GGCC 3 cut(s) 592, 956, 1029
BtgZI GCGATG 1 cut(s) 1153
BtsCI GGATG 5 cut(s) 489, 514, 527, 664, 1225
BtsI GCAGTG 1 cut(s) 446
BtsIMutI CAGTG 6 cut(s) 8, 431, 446, 828, 1241, 1344
Cac8I GCNNGC 1 cut(s) 1449
Cfr13I GGNCC 4 cut(s) 512, 932, 954, 1027
CseI GACGC 1 cut(s) 948
CsiI ACCWGGT 1 cut(s) 1164
Csp6I GTAC 5 cut(s) 259, 296, 357, 561, 1391
CviAII CATG 8 cut(s) 302, 360, 381, 452, 540, 746, 906, 1401
CviQI GTAC 5 cut(s) 259, 296, 357, 561, 1391
DdeI CTNAG 7 cut(s) 11, 183, 219, 495, 840, 1177, 1443
DpnI GATC 5 cut(s) 423, 603, 663, 698, 738
DpnII GATC 5 cut(s) 421, 601, 661, 696, 736
EaeI YGGCCR 1 cut(s) 590
Eam1104I CTCTTC 1 cut(s) 786
EarI CTCTTC 1 cut(s) 786
Ecl136II GAGCTC 1 cut(s) 1040
Eco24I GRGCYC 1 cut(s) 1042
Eco31I GGTCTC 1 cut(s) 1015
Eco47I GGWCC 2 cut(s) 512, 932
Eco53kI GAGCTC 1 cut(s) 1040
Eco57I CTGAAG 1 cut(s) 429
Eco81I CCTNAGG 1 cut(s) 495
Eco88I CYCGRG 1 cut(s) 964
EcoICRI GAGCTC 1 cut(s) 1040
EcoRI GAATTC 1 cut(s) 877
EcoRII CCWGG 2 cut(s) 1072, 1164
EcoT22I ATGCAT 1 cut(s) 382
EcoT38I GRGCYC 1 cut(s) 1042
FaeI CATG 8 cut(s) 305, 363, 384, 455, 543, 749, 909, 1404
FalI AAGNNNNNCTT 2 cut(s) 606, 638
FaqI GGGAC 1 cut(s) 356
FatI CATG 8 cut(s) 301, 359, 380, 451, 539, 745, 905, 1400
FauI CCCGC 1 cut(s) 1306
FbaI TGATCA 1 cut(s) 421
Fnu4HI GCNGC 4 cut(s) 957, 1275, 1415, 1429
FokI GGATG 5 cut(s) 476, 514, 521, 671, 1232
FriOI GRGCYC 1 cut(s) 1042
Fsp4HI GCNGC 4 cut(s) 957, 1275, 1415, 1429
GluI GCNGC 4 cut(s) 957, 1275, 1415, 1429
HaeIII GGCC 3 cut(s) 592, 956, 1029
HapII CCGG 2 cut(s) 474, 788
HgaI GACGC 1 cut(s) 948
Hin1II CATG 8 cut(s) 305, 363, 384, 455, 543, 749, 909, 1404
HinfI GANTC 2 cut(s) 520, 1175
HpaII CCGG 2 cut(s) 474, 788
HphI GGTGA 5 cut(s) 148, 488, 853, 894, 1418
Hpy166II GTNNAC 4 cut(s) 826, 1150, 1344, 1409
Hpy188III TCNNGA 3 cut(s) 718, 966, 1199
Hpy8I GTNNAC 4 cut(s) 826, 1150, 1344, 1409
HpyAV CCTTC 7 cut(s) 285, 358, 404, 408, 426, 790, 803
HpyCH4III ACNGT 3 cut(s) 565, 975, 1378
HpyCH4V TGCA 7 cut(s) 203, 305, 380, 439, 483, 568, 1423
HpyF10VI GCNNNNNNNGC 3 cut(s) 468, 1420, 1437
HpyF3I CTNAG 7 cut(s) 11, 183, 219, 495, 840, 1177, 1443
Hsp92II CATG 8 cut(s) 305, 363, 384, 455, 543, 749, 909, 1404
KpnI GGTACC 3 cut(s) 262, 299, 1394
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 5 cut(s) 421, 601, 661, 696, 736
LmnI GCTCC 3 cut(s) 403, 476, 871
Lsp1109I GCAGC 1 cut(s) 1415
LweI GCATC 4 cut(s) 258, 367, 1210, 1261
MabI ACCWGGT 1 cut(s) 1164
MaeIII GTNAC 3 cut(s) 278, 476, 900
MalI GATC 5 cut(s) 423, 603, 663, 698, 738
MboI GATC 5 cut(s) 421, 601, 661, 696, 736
MboII GAAGA 2 cut(s) 803, 1045
MfeI CAATTG 1 cut(s) 936
MflI RGATCY 2 cut(s) 696, 736
MhlI GDGCHC 1 cut(s) 1042
MlsI TGGCCA 1 cut(s) 592
MluCI AATT 9 cut(s) 15, 39, 74, 236, 727, 877, 893, 936, 1086
MluNI TGGCCA 1 cut(s) 592
MlyI GAGTC 1 cut(s) 1169
MmeI TCCRAC 2 cut(s) 53, 1363
Mox20I TGGCCA 1 cut(s) 592
Mph1103I ATGCAT 1 cut(s) 382
MscI TGGCCA 1 cut(s) 592
MseI TTAA 6 cut(s) 147, 465, 731, 1125, 1301, 1453
MslI CAYNNNNRTG 1 cut(s) 1349
Msp20I TGGCCA 1 cut(s) 592
MspA1I CMGCKG 2 cut(s) 47, 1277
MspI CCGG 2 cut(s) 474, 788
MspR9I CCNGG 2 cut(s) 1074, 1166
MunI CAATTG 1 cut(s) 936
MvaI CCWGG 2 cut(s) 1074, 1166
MvnI CGCG 2 cut(s) 959, 1138
MwoI GCNNNNNNNGC 3 cut(s) 468, 1420, 1437
NdeII GATC 5 cut(s) 421, 601, 661, 696, 736
NlaIII CATG 8 cut(s) 305, 363, 384, 455, 543, 749, 909, 1404
NlaIV GGNNCC 9 cut(s) 260, 297, 399, 472, 501, 738, 955, 1028, 1392
NmuCI GTSAC 3 cut(s) 278, 476, 900
NsiI ATGCAT 1 cut(s) 382
NspI RCATGY 3 cut(s) 305, 384, 543
OliI CACNNNNGTG 1 cut(s) 1349
PcsI WCGNNNNNNNCGW 1 cut(s) 971
PfeI GAWTC 1 cut(s) 520
PkrI GCNGC 4 cut(s) 958, 1276, 1416, 1430
PleI GAGTC 1 cut(s) 1169
PpsI GAGTC 1 cut(s) 1169
Psp124BI GAGCTC 1 cut(s) 1042
Psp6I CCWGG 2 cut(s) 1072, 1164
PspGI CCWGG 2 cut(s) 1072, 1164
PspN4I GGNNCC 9 cut(s) 260, 297, 399, 472, 501, 738, 955, 1028, 1392
PspPI GGNCC 4 cut(s) 512, 932, 954, 1027
PsuI RGATCY 2 cut(s) 696, 736
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 5 cut(s) 260, 297, 358, 562, 1392
RsaNI GTAC 5 cut(s) 259, 296, 357, 561, 1391
RseI CAYNNNNRTG 1 cut(s) 1349
SacI GAGCTC 1 cut(s) 1042
SaqAI TTAA 6 cut(s) 147, 465, 731, 1125, 1301, 1453
SatI GCNGC 4 cut(s) 957, 1275, 1415, 1429
Sau3AI GATC 5 cut(s) 421, 601, 661, 696, 736
Sau96I GGNCC 4 cut(s) 512, 932, 954, 1027
ScaI AGTACT 1 cut(s) 562
SchI GAGTC 1 cut(s) 1169
ScrFI CCNGG 2 cut(s) 1074, 1166
SduI GDGCHC 1 cut(s) 1042
SexAI ACCWGGT 1 cut(s) 1164
SfaNI GCATC 4 cut(s) 258, 367, 1210, 1261
SinI GGWCC 2 cut(s) 512, 932
SmiMI CAYNNNNRTG 1 cut(s) 1349
SmlI CTYRAG 1 cut(s) 1199
SmoI CTYRAG 1 cut(s) 1199
Sse9I AATT 9 cut(s) 15, 39, 74, 236, 727, 877, 893, 936, 1086
SsiI CCGC 5 cut(s) 957, 1136, 1275, 1313, 1415
SstI GAGCTC 1 cut(s) 1042
StyD4I CCNGG 2 cut(s) 1072, 1164
TaaI ACNGT 3 cut(s) 565, 975, 1378
TaqI TCGA 1 cut(s) 1094
TasI AATT 9 cut(s) 15, 39, 74, 236, 727, 877, 893, 936, 1086
TatI WGTACW 2 cut(s) 356, 560
TauI GCSGC 3 cut(s) 959, 1277, 1417
TfiI GAWTC 1 cut(s) 520
Tru1I TTAA 6 cut(s) 147, 465, 731, 1125, 1301, 1453
Tru9I TTAA 6 cut(s) 147, 465, 731, 1125, 1301, 1453
TscAI CASTG 6 cut(s) 15, 431, 446, 828, 1241, 1351
TseFI GTSAC 3 cut(s) 278, 476, 900
TseI GCWGC 1 cut(s) 1428
Tsp45I GTSAC 3 cut(s) 278, 476, 900
TspDTI ATGAA 5 cut(s) 99, 246, 478, 1145, 1184
TspGWI ACGGA 2 cut(s) 521, 720
TspRI CASTG 6 cut(s) 15, 431, 446, 828, 1241, 1351
VpaK11BI GGWCC 2 cut(s) 512, 932
XapI RAATTY 7 cut(s) 15, 39, 74, 236, 727, 877, 893
XceI RCATGY 3 cut(s) 305, 384, 543
ZrmI AGTACT 1 cut(s) 562
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.