FvH4_7g02731

Protochlorophyllide-dependent translocon component 52

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
3028583 .. 3041436
12854 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02731.t1

Sequence Viewer

Length: 1662 bp
ATGGCAACTCTGAGAATTTCATCTATTCGGCCACTACTACAAGTTCCGGCGGCCTGCAGCTTTGATAAAACCCAATCCCAAAAGTTCACTAATTCCTTGGGGTATAAGCATACACTCACTTCATCGTTCTCCTTAGTTGAAAGACACAAACCCTCATTCAAGGCATTCACCACCATATCATCATCTTCTATTACTACTGAGACTGCAAATAACCCATCTGCAGTACCACAAGTTGAAACTCAGACCCAAGATGAGAAATTTGACTGGTATGCCCATTGGTACCCGTTGATGCCAGTTTGTGACCTTGACAAAAGGGTGCCGCATGCAAAGAAGGTTTTGGGCATTGATGTGGTGGTGTGGTGGGACAGAAATGAGAGTGCATGGAAGGTGTTTGATGATGCATGTCCTCACAGACTGGCTCCATTATCTGAAGGGAGGATTGATCAATGGGGAAGGCTGCAGTGCGTTTATCATGGCTGGTGTTTTAATGGCTCCGGTGACTGCAAGTTCATCCCTCAGGCACCTACCGACGGTCCTCCGGTTCACACATCTAAGAAAGCATGTGTAGGTGCTTATCCAAGTACTGTGCAGAATGGAATAGTGTGGTTCTGGCCAAGTACCGATCCTCAACACAAAGACATTCTTGCAGAGAAAAAACCTCCCTACATACCAGAAATCGATGATCCAACGTTTACTTGCGTGATGGGGAATAGAGACTTCCCTTACGGGTATGAGATATTGGTTGAAAATTTGATGGATCCAGCTCATGTTCCATACGCACATTATGGAATAATGCCAAGTCAACCACCGGATGTGAAAGCTGACAGAGAAGGGGGCAGACCAATTGATTTATACGTTCCTAAGTTGGACATAAATGGTTTCACCGTAGAGCACCAGAATTCGGGACAGAGTAAATTTGTGCCACCATGTGTGTTTTATACATCTTTCTTTGGTCCGATTGACAACAATAATGGGGCTGCTGCATCCTCGGGAATATCGTATGGTTTTCTGCAGATTCCAGGTGACAAGGTGTTATCAGCCCAAAGTAGAGCTCTTGTAGTTTTTTTCTGTGTTCCGGTTAGTCCAGGCAATAGCAGATTGATAACAACCTCTCCAATAAACTATGGCGTTTGGATGAAGATAATTCCACGATGGATACATCACTTTGGATTCAACTTGCTTTTAGATTCAGATATAAATTTGCTTCATCTTGAGGAACGTAGGATTAGGGATGCAGGTATAACCCAGTGGCAGAAAGCTTGTTTTGTGCCAACAAAGTCAGATGCCGCTGTCGTTGGTTTTCGAAAATGGTTATACAAGTATGCAGGTGGTCAAGTAGATTGGAGGGGCAAGTTCACGGGAGCGCTTCCCCCCACTCCTCCTAATGAACAGTTGATGGATAGGTACCGATCTCATGTGATGAACTGCAGCAGTTGCAATGCTGCCCACAAAAATTTGAGCGTGCTTAAAGTGGCATTGGAGGTTGTTTCATTTTCTCTACTCGGAATTGTCGCTGCAAGCAAGCAAGGAGCGCTATCATCAGTGGTTGCAAGAAGTGTGCTACTTGCAACCGCTCTATTGTGCTTCGCAAGTTCAAAATGGTTGGCTCATTTTATCTACAAAAATTTTCATTTTCACGGCTACAACCATGCCCTTCTGTAA

Protein Analysis

554

Amino Acids

61.77

Weight (kDa)

8.61

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske PF00355 92 - 175 2.2e-23 Rieske [2Fe-2S] domain
PaO PF08417 306 - 413 1.6e-18 Pheophorbide a oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1316
Acc36I ACCTGC 2 cut(s) 1226, 1316
Acc65I GGTACC 2 cut(s) 279, 1404
AccB1I GGYRCC 4 cut(s) 279, 316, 520, 1404
AccBSI CCGCTC 1 cut(s) 1574
AciI CCGC 4 cut(s) 50, 320, 1287, 1572
AclI AACGTT 1 cut(s) 689
AclWI GGATC 4 cut(s) 617, 677, 752, 765
AcoI YGGCCR 2 cut(s) 29, 611
AcsI RAATTY 8 cut(s) 15, 257, 748, 898, 914, 1198, 1453, 1624
AcuI CTGAAG 1 cut(s) 450
AdeI CACNNNGTG 1 cut(s) 929
AfaI GTAC 5 cut(s) 225, 281, 583, 619, 1406
AfeI AGCGCT 2 cut(s) 1365, 1533
AfiI CCNNNNNNNGG 2 cut(s) 530, 901
AgsI TTSAA 6 cut(s) 140, 160, 236, 746, 1174, 1596
AjnI CCWGG 2 cut(s) 1018, 1084
AluBI AGCT 5 cut(s) 60, 764, 821, 1052, 1259
AluI AGCT 5 cut(s) 60, 764, 821, 1052, 1259
Alw21I GWGCWC 2 cut(s) 894, 1054
Alw26I GTCTC 2 cut(s) 194, 708
AlwI GGATC 4 cut(s) 617, 677, 752, 765
Ama87I CYCGRG 1 cut(s) 988
Aor51HI AGCGCT 2 cut(s) 1365, 1533
AoxI GGCC 3 cut(s) 29, 51, 611
ApeKI GCWGC 7 cut(s) 57, 457, 977, 980, 1428, 1442, 1514
ApoI RAATTY 8 cut(s) 15, 257, 748, 898, 914, 1198, 1453, 1624
Asp718I GGTACC 2 cut(s) 279, 1404
AspLEI GCGC 2 cut(s) 1366, 1534
AspS9I GGNCC 2 cut(s) 533, 953
AsuHPI GGTGA 4 cut(s) 160, 509, 874, 1034
AsuII TTCGAA 1 cut(s) 1303
AvaI CYCGRG 1 cut(s) 988
AvaII GGWCC 2 cut(s) 533, 953
AxyI CCTNAGG 1 cut(s) 516
BalI TGGCCA 1 cut(s) 613
BamHI GGATCC 1 cut(s) 757
BanI GGYRCC 4 cut(s) 279, 316, 520, 1404
BanII GRGCYC 1 cut(s) 1054
Bbv12I GWGCWC 2 cut(s) 894, 1054
BbvI GCAGC 7 cut(s) 69, 444, 964, 967, 1429, 1440, 1501
BccI CCATC 5 cut(s) 223, 697, 748, 1146, 1390
BceAI ACGGC 1 cut(s) 1654
BciT130I CCWGG 2 cut(s) 1020, 1086
BciVI GTATCC 1 cut(s) 1149
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 194, 708
BfmI CTRYAG 5 cut(s) 55, 219, 458, 1010, 1426
BfoI RGCGCY 2 cut(s) 1367, 1535
BfuAI ACCTGC 2 cut(s) 1226, 1316
BfuI GTATCC 1 cut(s) 1149
BmcAI AGTACT 1 cut(s) 583
Bme1390I CCNGG 2 cut(s) 1020, 1086
Bme18I GGWCC 2 cut(s) 533, 953
BmeT110I CYCGRG 1 cut(s) 988
BmgT120I GGNCC 2 cut(s) 533, 953
BmiI GGNNCC 7 cut(s) 281, 318, 420, 493, 522, 759, 1406
BmrFI CCNGG 2 cut(s) 1020, 1086
BmrI ACTGGG 1 cut(s) 1240
BmsI GCATC 5 cut(s) 279, 388, 992, 1222, 1273
BmuI ACTGGG 1 cut(s) 1240
Bpu14I TTCGAA 1 cut(s) 1303
BpuEI CTTGAG 1 cut(s) 1232
Bsa29I ATCGAT 1 cut(s) 678
BsaJI CCNNGG 2 cut(s) 96, 987
BsaWI WCCGGW 4 cut(s) 494, 538, 808, 1075
BsaXI ACNNNNNCTCC 2 cut(s) 1096, 1126
Bsc4I CCNNNNNNNGG 2 cut(s) 530, 901
Bse1I ACTGG 4 cut(s) 269, 293, 420, 1246
Bse21I CCTNAGG 1 cut(s) 516
Bse3DI GCAATG 1 cut(s) 1444
BseBI CCWGG 2 cut(s) 1020, 1086
BseCI ATCGAT 1 cut(s) 678
BseDI CCNNGG 2 cut(s) 96, 987
BseGI GGATG 5 cut(s) 510, 817, 983, 1140, 1237
BseLI CCNNNNNNNGG 2 cut(s) 530, 901
BseMI GCAATG 1 cut(s) 1444
BseMII CTCAG 3 cut(s) 189, 254, 530
BseNI ACTGG 4 cut(s) 269, 293, 420, 1246
BseRI GAGGAG 1 cut(s) 1368
BseXI GCAGC 7 cut(s) 69, 444, 964, 967, 1429, 1440, 1501
BsgI GTGCAG 1 cut(s) 608
BshFI GGCC 3 cut(s) 31, 53, 613
BshNI GGYRCC 4 cut(s) 279, 316, 520, 1404
BshVI ATCGAT 1 cut(s) 678
BsiHKAI GWGCWC 2 cut(s) 894, 1054
BsiHKCI CYCGRG 1 cut(s) 988
BsiSI CCGG 5 cut(s) 47, 495, 539, 809, 1076
BslFI GGGAC 2 cut(s) 377, 918
BslI CCNNNNNNNGG 2 cut(s) 530, 901
BsmAI GTCTC 2 cut(s) 194, 708
BsmFI GGGAC 2 cut(s) 377, 918
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 3 cut(s) 31, 53, 613
BsoBI CYCGRG 1 cut(s) 988
Bsp119I TTCGAA 1 cut(s) 1303
Bsp1286I GDGCHC 2 cut(s) 894, 1054
Bsp143I GATC 5 cut(s) 442, 622, 682, 757, 1409
BspACI CCGC 4 cut(s) 50, 320, 1287, 1572
BspANI GGCC 3 cut(s) 31, 53, 613
BspCNI CTCAG 3 cut(s) 190, 253, 529
BspDI ATCGAT 1 cut(s) 678
BspLI GGNNCC 7 cut(s) 281, 318, 420, 493, 522, 759, 1406
BspMAI CTGCAG 5 cut(s) 59, 223, 462, 1014, 1430
BspMI ACCTGC 2 cut(s) 1226, 1316
BspPI GGATC 4 cut(s) 617, 677, 752, 765
BspT104I TTCGAA 1 cut(s) 1303
BspT107I GGYRCC 4 cut(s) 279, 316, 520, 1404
BsrBI CCGCTC 1 cut(s) 1574
BsrDI GCAATG 1 cut(s) 1444
BsrI ACTGG 4 cut(s) 269, 293, 420, 1246
BssECI CCNNGG 2 cut(s) 96, 987
BssMI GATC 5 cut(s) 442, 622, 682, 757, 1409
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 2 cut(s) 1020, 1086
Bst4CI ACNGT 4 cut(s) 533, 586, 886, 1392
BstAPI GCANNNNNTGC 1 cut(s) 1434
BstBI TTCGAA 1 cut(s) 1303
BstC8I GCNNGC 5 cut(s) 55, 324, 1463, 1519, 1523
BstDEI CTNAG 7 cut(s) 11, 133, 198, 240, 516, 552, 861
BstF5I GGATG 5 cut(s) 510, 817, 983, 1140, 1237
BstH2I RGCGCY 2 cut(s) 1367, 1535
BstHHI GCGC 2 cut(s) 1366, 1534
BstKTI GATC 5 cut(s) 445, 625, 685, 760, 1412
BstMAI GTCTC 2 cut(s) 194, 708
BstMBI GATC 5 cut(s) 442, 622, 682, 757, 1409
BstMWI GCNNNNNNNGC 2 cut(s) 1434, 1531
BstNI CCWGG 2 cut(s) 1020, 1086
BstNSI RCATGY 3 cut(s) 326, 405, 564
BstSCI CCNGG 2 cut(s) 1018, 1084
BstSFI CTRYAG 5 cut(s) 55, 219, 458, 1010, 1426
BstV1I GCAGC 7 cut(s) 69, 444, 964, 967, 1429, 1440, 1501
BstX2I RGATCY 1 cut(s) 757
BstYI RGATCY 1 cut(s) 757
Bsu15I ATCGAT 1 cut(s) 678
Bsu36I CCTNAGG 1 cut(s) 516
BsuI GTATCC 1 cut(s) 1149
BsuRI GGCC 3 cut(s) 31, 53, 613
BsuTUI ATCGAT 1 cut(s) 678
BtsCI GGATG 5 cut(s) 510, 817, 983, 1140, 1237
BtsI GCAGTG 1 cut(s) 467
BtsIMutI CAGTG 3 cut(s) 467, 1253, 1548
BveI ACCTGC 2 cut(s) 1226, 1316
Cac8I GCNNGC 5 cut(s) 55, 324, 1463, 1519, 1523
CfoI GCGC 2 cut(s) 1366, 1534
Cfr13I GGNCC 2 cut(s) 533, 953
ClaI ATCGAT 1 cut(s) 678
Csp6I GTAC 5 cut(s) 224, 280, 582, 618, 1405
CviAII CATG 9 cut(s) 323, 381, 402, 473, 561, 767, 927, 1415, 1649
CviQI GTAC 5 cut(s) 224, 280, 582, 618, 1405
DdeI CTNAG 7 cut(s) 11, 133, 198, 240, 516, 552, 861
DpnI GATC 5 cut(s) 444, 624, 684, 759, 1411
DpnII GATC 5 cut(s) 442, 622, 682, 757, 1409
DraIII CACNNNGTG 1 cut(s) 929
EaeI YGGCCR 2 cut(s) 29, 611
Ecl136II GAGCTC 1 cut(s) 1052
Eco130I CCWWGG 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 1054
Eco47I GGWCC 2 cut(s) 533, 953
Eco47III AGCGCT 2 cut(s) 1365, 1533
Eco53kI GAGCTC 1 cut(s) 1052
Eco57I CTGAAG 1 cut(s) 450
Eco81I CCTNAGG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 988
EcoICRI GAGCTC 1 cut(s) 1052
EcoRI GAATTC 1 cut(s) 898
EcoRII CCWGG 2 cut(s) 1018, 1084
EcoT14I CCWWGG 1 cut(s) 96
EcoT22I ATGCAT 1 cut(s) 403
EcoT38I GRGCYC 1 cut(s) 1054
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 9 cut(s) 326, 384, 405, 476, 564, 770, 930, 1418, 1652
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FaqI GGGAC 2 cut(s) 377, 918
FatI CATG 9 cut(s) 322, 380, 401, 472, 560, 766, 926, 1414, 1648
FbaI TGATCA 1 cut(s) 442
FokI GGATG 5 cut(s) 497, 824, 970, 1147, 1244
FriOI GRGCYC 1 cut(s) 1054
GlaI GCGC 2 cut(s) 1365, 1533
HaeII RGCGCY 2 cut(s) 1367, 1535
HaeIII GGCC 3 cut(s) 31, 53, 613
HapII CCGG 5 cut(s) 47, 495, 539, 809, 1076
HhaI GCGC 2 cut(s) 1366, 1534
Hin1II CATG 9 cut(s) 326, 384, 405, 476, 564, 770, 930, 1418, 1652
Hin6I GCGC 2 cut(s) 1364, 1532
HinP1I GCGC 2 cut(s) 1364, 1532
HincII GTYRAC 1 cut(s) 803
HindII GTYRAC 1 cut(s) 803
HindIII AAGCTT 1 cut(s) 1257
HinfI GANTC 3 cut(s) 1015, 1170, 1187
HpaII CCGG 5 cut(s) 47, 495, 539, 809, 1076
HphI GGTGA 4 cut(s) 160, 509, 874, 1034
Hpy166II GTNNAC 5 cut(s) 87, 544, 693, 803, 1356
Hpy188I TCNGA 7 cut(s) 12, 243, 430, 957, 1192, 1282, 1505
Hpy188III TCNNGA 3 cut(s) 903, 990, 1211
Hpy8I GTNNAC 5 cut(s) 87, 544, 693, 803, 1356
Hpy99I CGWCG 1 cut(s) 533
HpyAV CCTTC 5 cut(s) 325, 379, 425, 447, 824
HpyCH4III ACNGT 4 cut(s) 533, 586, 886, 1392
HpyCH4IV ACGT 3 cut(s) 689, 855, 1219
HpyF10VI GCNNNNNNNGC 2 cut(s) 1434, 1531
HpyF3I CTNAG 7 cut(s) 11, 133, 198, 240, 516, 552, 861
HpySE526I ACGT 3 cut(s) 689, 855, 1219
Hsp92II CATG 9 cut(s) 326, 384, 405, 476, 564, 770, 930, 1418, 1652
HspAI GCGC 2 cut(s) 1364, 1532
KpnI GGTACC 2 cut(s) 283, 1408
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 5 cut(s) 442, 622, 682, 757, 1409
LmnI GCTCC 4 cut(s) 424, 497, 1361, 1529
Lsp1109I GCAGC 7 cut(s) 69, 444, 964, 967, 1429, 1440, 1501
LweI GCATC 5 cut(s) 279, 388, 992, 1222, 1273
MaeII ACGT 3 cut(s) 689, 855, 1219
MaeIII GTNAC 3 cut(s) 299, 497, 1022
MalI GATC 5 cut(s) 444, 624, 684, 759, 1411
MbiI CCGCTC 1 cut(s) 1574
MboI GATC 5 cut(s) 442, 622, 682, 757, 1409
MboII GAAGA 2 cut(s) 177, 1150
MfeI CAATTG 1 cut(s) 843
MflI RGATCY 1 cut(s) 757
MhlI GDGCHC 2 cut(s) 894, 1054
MlsI TGGCCA 1 cut(s) 613
MluNI TGGCCA 1 cut(s) 613
MmeI TCCRAC 2 cut(s) 710, 846
Mox20I TGGCCA 1 cut(s) 613
Mph1103I ATGCAT 1 cut(s) 403
MscI TGGCCA 1 cut(s) 613
MseI TTAA 2 cut(s) 486, 1467
MslI CAYNNNNRTG 1 cut(s) 347
Msp20I TGGCCA 1 cut(s) 613
MspA1I CMGCKG 1 cut(s) 1289
MspI CCGG 5 cut(s) 47, 495, 539, 809, 1076
MspR9I CCNGG 2 cut(s) 1020, 1086
MunI CAATTG 1 cut(s) 843
Mva1269I GAATGC 1 cut(s) 164
MvaI CCWGG 2 cut(s) 1020, 1086
MwoI GCNNNNNNNGC 2 cut(s) 1434, 1531
NdeII GATC 5 cut(s) 442, 622, 682, 757, 1409
NlaIII CATG 9 cut(s) 326, 384, 405, 476, 564, 770, 930, 1418, 1652
NlaIV GGNNCC 7 cut(s) 281, 318, 420, 493, 522, 759, 1406
NmuCI GTSAC 3 cut(s) 299, 497, 1022
NsiI ATGCAT 1 cut(s) 403
NspI RCATGY 3 cut(s) 326, 405, 564
NspV TTCGAA 1 cut(s) 1303
PaeI GCATGC 1 cut(s) 326
PaqCI CACCTGC 1 cut(s) 1316
PcsI WCGNNNNNNNCGW 1 cut(s) 995
PctI GAATGC 1 cut(s) 164
PfeI GAWTC 3 cut(s) 1015, 1170, 1187
Psp124BI GAGCTC 1 cut(s) 1054
Psp1406I AACGTT 1 cut(s) 689
Psp6I CCWGG 2 cut(s) 1018, 1084
PspGI CCWGG 2 cut(s) 1018, 1084
PspN4I GGNNCC 7 cut(s) 281, 318, 420, 493, 522, 759, 1406
PspPI GGNCC 2 cut(s) 533, 953
PstI CTGCAG 5 cut(s) 59, 223, 462, 1014, 1430
PsuI RGATCY 1 cut(s) 757
RsaI GTAC 5 cut(s) 225, 281, 583, 619, 1406
RsaNI GTAC 5 cut(s) 224, 280, 582, 618, 1405
RseI CAYNNNNRTG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 1054
SaqAI TTAA 2 cut(s) 486, 1467
Sau3AI GATC 5 cut(s) 442, 622, 682, 757, 1409
Sau96I GGNCC 2 cut(s) 533, 953
ScaI AGTACT 1 cut(s) 583
ScrFI CCNGG 2 cut(s) 1020, 1086
SduI GDGCHC 2 cut(s) 894, 1054
SfaNI GCATC 5 cut(s) 279, 388, 992, 1222, 1273
SfcI CTRYAG 5 cut(s) 55, 219, 458, 1010, 1426
SfuI TTCGAA 1 cut(s) 1303
SinI GGWCC 2 cut(s) 533, 953
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 1211
SmoI CTYRAG 1 cut(s) 1211
SphI GCATGC 1 cut(s) 326
SsiI CCGC 4 cut(s) 50, 320, 1287, 1572
SstI GAGCTC 1 cut(s) 1054
StyD4I CCNGG 2 cut(s) 1018, 1084
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 4 cut(s) 533, 586, 886, 1392
TaiI ACGT 3 cut(s) 692, 858, 1222
TaqI TCGA 2 cut(s) 678, 1303
TatI WGTACW 1 cut(s) 581
TauI GCSGC 3 cut(s) 53, 322, 1289
TfiI GAWTC 3 cut(s) 1015, 1170, 1187
Tru1I TTAA 2 cut(s) 486, 1467
Tru9I TTAA 2 cut(s) 486, 1467
TscAI CASTG 3 cut(s) 467, 1253, 1548
TseFI GTSAC 3 cut(s) 299, 497, 1022
TseI GCWGC 7 cut(s) 57, 457, 977, 980, 1428, 1442, 1514
Tsp45I GTSAC 3 cut(s) 299, 497, 1022
TspDTI ATGAA 9 cut(s) 9, 111, 499, 1151, 1196, 1401, 1436, 1479, 1619
TspRI CASTG 3 cut(s) 467, 1253, 1548
VpaK11BI GGWCC 2 cut(s) 533, 953
XapI RAATTY 8 cut(s) 15, 257, 748, 898, 914, 1198, 1453, 1624
XceI RCATGY 3 cut(s) 326, 405, 564
ZrmI AGTACT 1 cut(s) 583
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.