Rh5DG568400

Protochlorophyllide-dependent translocon component 52

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
87508838 .. 87512936
4099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG568400.1

Sequence Viewer

Length: 1623 bp
ATGGAAACTCTCAGAGTTTCATCTATTCCATCATTACAAATTCCTTCTAAATTTGATAAAACCCAATCAAAGAAACTCACTTTCTTGGGTTTTAATCAAACACCCAGTTCATCATTCTCATTGGTTCAAAGAAACAAACCAACATTCAAGACACTCACCACCATATCATCCTCTATTGCAACTGAGACTGAAAACCCATCTGGACCACAAGTTGAAACTCAAACCCAAGATGACAAATTTGATTGGTATGCCCATTGGTACCCATTGATGCCAGTCTGTGACCTTGACAAGAGAGTTCCACATGCAAAAAAAGTTCTGGGTATTGATGTGGTGGTGTGGTGGGACAAAAATGAAAGTACATGGAAGGTGTTTGATGATGCTTGTCCTCACAGATTGGCTCCATTATCTGAAGGGAGGATTGATCAGTGGGGAAGGTTACAGTGTGTTTATCATGGCTGGTGTTTTAATGGCTCTGGTGACTGCAAATTCATTCCTCAAGCACCTAAGGATGGCCCTCCGATTCACACTTCGAAGAAAGCATGTGTAGGTGCTTATCCAAGTACCGTGCAGAATGGAATCGTGTGGTTCTGGCCAAGTTCTGATCCTCAATACAAAGATATTCTTGCAGAGAAAAAGCCTCCCTACATACCGGAAATAGATGATCCATCATATGCTAGCTTGATGGGAAATAGGGAGATACCTTACGGGTACGAGGTCTTAATTGAAAATCTTATGGACCCTGCTCATGTTCCATATGCACATTATGGAATAATGCAAACTCGACAACCCAAAGAGAAAGCTGATAGAGAAGGGGGCAGACCATTGGACTTTTATATTCCTAAGTTGGACATAAATGGTTTCATCGCAGAGCAGAATCCAGGTCACAGTATATTTCTGCCGCCATGTGTGTTTTGTGTTTCTATCTTTAGTCCAGTTGACCATATTAGTGGGGCTGCATCCTCACCTGGAACTGAAAAGGTATTATCACCCCAAACGGGACAAAAGCAAGCTCTTTTAGTTTTTATCTGTGTTCCAGTTAGTCCAGGTAATAGCAGATTGATATGGACTTTCCCAAGAAACTTTGGCGTTTGGATTGACAGGATTGTTCCACGATGGATATTTCATATTGGGCAAAACCTGATTCTGGACTCGGATTTATATTTGCTTCATATTGAGGAACGTAGGATAATGGATGCTGGCCCTACCCAGTGGCAGAAAGCTTGTTTTGTGCCAACAAAGTCAGATGCCCTTGTTGTTGGTTTCCGAAAGTGGTTAAACAAGTATGCGGGTGGTCAGGTAGATTGGAGAGGCAAGTTCACTGAGGCTCTACCGCCCACTCCTCCTAAAGAACAGTTGTTGGACAGGTACCGGTCTCATGTGGTAAACTGCAGCAGTTGCAATTCTGCCTACAAAGCTCTAGGCGTGCTTGAAGTCGTATTGCAGGTCTTCTCGCTTTCTTTACTTGGAATTGTCGCTGCAATTAAGCAAGGAGTATTATCATCACTGGCTGCGAGAACTGCGCTAGTTGCAACAGCTCTACTATGCTTTGCAGGTTCAAAATGGTTGGCTCATTTTATCTACAAAAACTTTCATTTTCACGACTACAACCATGCCCTTGTGTAA

Protein Analysis

540

Amino Acids

60.72

Weight (kDa)

8.43

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske PF00355 85 - 169 9.4e-24 Rieske [2Fe-2S] domain
PaO PF08417 298 - 400 1.2e-27 Pheophorbide a oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1432, 1541
Acc65I GGTACC 2 cut(s) 258, 1365
AccB1I GGYRCC 2 cut(s) 258, 1365
AciI CCGC 3 cut(s) 899, 1286, 1331
AclWI GGATC 2 cut(s) 596, 656
AcoI YGGCCR 1 cut(s) 590
AcsI RAATTY 4 cut(s) 39, 50, 236, 485
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 5 cut(s) 260, 358, 562, 710, 1367
AfiI CCNNNNNNNGG 3 cut(s) 509, 995, 1144
AgeI ACCGGT 1 cut(s) 1368
AgsI TTSAA 6 cut(s) 128, 148, 215, 725, 1430, 1557
AjnI CCWGG 3 cut(s) 877, 964, 1042
AluBI AGCT 6 cut(s) 678, 800, 1010, 1220, 1415, 1535
AluI AGCT 6 cut(s) 678, 800, 1010, 1220, 1415, 1535
Alw26I GTCTC 2 cut(s) 179, 1377
AlwI GGATC 2 cut(s) 596, 656
AoxI GGCC 3 cut(s) 511, 590, 1198
ApeKI GCWGC 4 cut(s) 953, 1389, 1475, 1508
ApoI RAATTY 4 cut(s) 39, 50, 236, 485
AsiGI ACCGGT 1 cut(s) 1368
Asp718I GGTACC 2 cut(s) 258, 1365
AspLEI GCGC 1 cut(s) 1522
AspS9I GGNCC 4 cut(s) 203, 512, 736, 1199
AsuHPI GGTGA 4 cut(s) 148, 488, 954, 978
AsuII TTCGAA 1 cut(s) 530
AsuNHI GCTAGC 1 cut(s) 674
AvaII GGWCC 2 cut(s) 203, 736
AxyI CCTNAGG 1 cut(s) 504
BalI TGGCCA 1 cut(s) 592
BanI GGYRCC 2 cut(s) 258, 1365
BbsI GAAGAC 1 cut(s) 1438
BbvI GCAGC 4 cut(s) 940, 1401, 1462, 1495
BccI CCATC 6 cut(s) 37, 205, 503, 673, 676, 1107
BciT130I CCWGG 3 cut(s) 879, 966, 1044
BclI TGATCA 1 cut(s) 421
BcoDI GTCTC 2 cut(s) 179, 1377
BfaI CTAG 3 cut(s) 675, 1418, 1523
BfmI CTRYAG 1 cut(s) 1387
BfuAI ACCTGC 2 cut(s) 1432, 1541
BisI GCNGC 5 cut(s) 899, 954, 1390, 1476, 1509
BlsI GCNGC 5 cut(s) 900, 955, 1391, 1477, 1510
Bme1390I CCNGG 3 cut(s) 879, 966, 1044
Bme18I GGWCC 2 cut(s) 203, 736
BmgT120I GGNCC 4 cut(s) 203, 512, 736, 1199
BmiI GGNNCC 4 cut(s) 260, 399, 738, 1367
BmrFI CCNGG 3 cut(s) 879, 966, 1044
BmrI ACTGGG 2 cut(s) 99, 1201
BmsI GCATC 5 cut(s) 258, 367, 965, 1183, 1234
BmtI GCTAGC 1 cut(s) 678
BmuI ACTGGG 2 cut(s) 99, 1201
BpiI GAAGAC 1 cut(s) 1438
Bpu14I TTCGAA 1 cut(s) 530
BpuEI CTTGAG 1 cut(s) 480
BsaI GGTCTC 1 cut(s) 1377
BsaWI WCCGGW 2 cut(s) 649, 1368
Bsc4I CCNNNNNNNGG 3 cut(s) 509, 995, 1144
Bse118I RCCGGY 1 cut(s) 1368
Bse1I ACTGG 6 cut(s) 105, 272, 932, 1034, 1207, 1509
Bse21I CCTNAGG 1 cut(s) 504
BseBI CCWGG 3 cut(s) 879, 966, 1044
BseGI GGATG 4 cut(s) 167, 514, 956, 1198
BseLI CCNNNNNNNGG 3 cut(s) 509, 995, 1144
BseMII CTCAG 3 cut(s) 25, 174, 1311
BseNI ACTGG 6 cut(s) 105, 272, 932, 1034, 1207, 1509
BseRI GAGGAG 1 cut(s) 1329
BseXI GCAGC 4 cut(s) 940, 1401, 1462, 1495
BsgI GTGCAG 1 cut(s) 587
BshFI GGCC 3 cut(s) 513, 592, 1200
BshNI GGYRCC 2 cut(s) 258, 1365
BshTI ACCGGT 1 cut(s) 1368
BsiSI CCGG 2 cut(s) 650, 1369
BslFI GGGAC 2 cut(s) 356, 1011
BslI CCNNNNNNNGG 3 cut(s) 509, 995, 1144
BsmAI GTCTC 2 cut(s) 179, 1377
BsmFI GGGAC 2 cut(s) 356, 1011
BsnI GGCC 3 cut(s) 513, 592, 1200
Bso31I GGTCTC 1 cut(s) 1377
Bsp119I TTCGAA 1 cut(s) 530
Bsp143I GATC 3 cut(s) 421, 601, 661
BspACI CCGC 3 cut(s) 899, 1286, 1331
BspANI GGCC 3 cut(s) 513, 592, 1200
BspCNI CTCAG 3 cut(s) 24, 175, 1312
BspLI GGNNCC 4 cut(s) 260, 399, 738, 1367
BspMAI CTGCAG 1 cut(s) 1391
BspMI ACCTGC 2 cut(s) 1432, 1541
BspOI GCTAGC 1 cut(s) 678
BspPI GGATC 2 cut(s) 596, 656
BspT104I TTCGAA 1 cut(s) 530
BspT107I GGYRCC 2 cut(s) 258, 1365
BspTNI GGTCTC 1 cut(s) 1377
BsrFI RCCGGY 1 cut(s) 1368
BsrI ACTGG 6 cut(s) 105, 272, 932, 1034, 1207, 1509
BssAI RCCGGY 1 cut(s) 1368
BssMI GATC 3 cut(s) 421, 601, 661
Bst2UI CCWGG 3 cut(s) 879, 966, 1044
Bst4CI ACNGT 4 cut(s) 441, 565, 887, 1353
BstAPI GCANNNNNTGC 1 cut(s) 1395
BstBI TTCGAA 1 cut(s) 530
BstC8I GCNNGC 4 cut(s) 676, 1008, 1198, 1424
BstDEI CTNAG 5 cut(s) 11, 183, 504, 840, 1320
BstF5I GGATG 4 cut(s) 167, 514, 956, 1198
BstHHI GCGC 1 cut(s) 1522
BstKTI GATC 3 cut(s) 424, 604, 664
BstMAI GTCTC 2 cut(s) 179, 1377
BstMBI GATC 3 cut(s) 421, 601, 661
BstMWI GCNNNNNNNGC 4 cut(s) 1395, 1412, 1517, 1526
BstNI CCWGG 3 cut(s) 879, 966, 1044
BstNSI RCATGY 2 cut(s) 305, 543
BstSCI CCNGG 3 cut(s) 877, 964, 1042
BstSFI CTRYAG 1 cut(s) 1387
BstV1I GCAGC 4 cut(s) 940, 1401, 1462, 1495
BstV2I GAAGAC 1 cut(s) 1438
BstXI CCANNNNNNTGG 1 cut(s) 947
Bsu36I CCTNAGG 1 cut(s) 504
BsuRI GGCC 3 cut(s) 513, 592, 1200
BtgZI GCGATG 1 cut(s) 847
BtsCI GGATG 4 cut(s) 167, 514, 956, 1198
BtsIMutI CAGTG 5 cut(s) 431, 446, 1214, 1317, 1502
BveI ACCTGC 2 cut(s) 1432, 1541
Cac8I GCNNGC 4 cut(s) 676, 1008, 1198, 1424
CfoI GCGC 1 cut(s) 1522
Cfr10I RCCGGY 1 cut(s) 1368
Cfr13I GGNCC 4 cut(s) 203, 512, 736, 1199
Csp6I GTAC 5 cut(s) 259, 357, 561, 709, 1366
CspAI ACCGGT 1 cut(s) 1368
CviAII CATG 8 cut(s) 302, 360, 452, 540, 746, 903, 1376, 1610
CviQI GTAC 5 cut(s) 259, 357, 561, 709, 1366
DdeI CTNAG 5 cut(s) 11, 183, 504, 840, 1320
DpnI GATC 3 cut(s) 423, 603, 663
DpnII GATC 3 cut(s) 421, 601, 661
EaeI YGGCCR 1 cut(s) 590
Eco31I GGTCTC 1 cut(s) 1377
Eco47I GGWCC 2 cut(s) 203, 736
Eco57I CTGAAG 1 cut(s) 429
Eco81I CCTNAGG 1 cut(s) 504
EcoRII CCWGG 3 cut(s) 877, 964, 1042
FaeI CATG 8 cut(s) 305, 363, 455, 543, 749, 906, 1379, 1613
FalI AAGNNNNNCTT 2 cut(s) 606, 638
FaqI GGGAC 2 cut(s) 356, 1011
FatI CATG 8 cut(s) 301, 359, 451, 539, 745, 902, 1375, 1609
FauI CCCGC 1 cut(s) 1279
FauNDI CATATG 2 cut(s) 670, 754
FbaI TGATCA 1 cut(s) 421
Fnu4HI GCNGC 5 cut(s) 899, 954, 1390, 1476, 1509
FokI GGATG 4 cut(s) 154, 521, 943, 1205
Fsp4HI GCNGC 5 cut(s) 899, 954, 1390, 1476, 1509
FspBI CTAG 3 cut(s) 675, 1418, 1523
GlaI GCGC 1 cut(s) 1521
GluI GCNGC 5 cut(s) 899, 954, 1390, 1476, 1509
HaeIII GGCC 3 cut(s) 513, 592, 1200
HapII CCGG 2 cut(s) 650, 1369
HhaI GCGC 1 cut(s) 1522
Hin1II CATG 8 cut(s) 305, 363, 455, 543, 749, 906, 1379, 1613
Hin6I GCGC 1 cut(s) 1520
HinP1I GCGC 1 cut(s) 1520
HincII GTYRAC 1 cut(s) 937
HindII GTYRAC 1 cut(s) 937
HindIII AAGCTT 1 cut(s) 1218
HinfI GANTC 5 cut(s) 520, 576, 874, 1141, 1148
HpaII CCGG 2 cut(s) 650, 1369
HphI GGTGA 4 cut(s) 148, 488, 954, 978
Hpy166II GTNNAC 3 cut(s) 937, 1317, 1384
Hpy188I TCNGA 7 cut(s) 14, 409, 519, 601, 1153, 1243, 1265
Hpy188III TCNNGA 4 cut(s) 148, 201, 1145, 1598
Hpy8I GTNNAC 3 cut(s) 937, 1317, 1384
HpyAV CCTTC 5 cut(s) 54, 358, 404, 426, 803
HpyCH4III ACNGT 4 cut(s) 441, 565, 887, 1353
HpyCH4IV ACGT 1 cut(s) 1180
HpyF10VI GCNNNNNNNGC 4 cut(s) 1395, 1412, 1517, 1526
HpyF3I CTNAG 5 cut(s) 11, 183, 504, 840, 1320
HpySE526I ACGT 1 cut(s) 1180
Hsp92II CATG 8 cut(s) 305, 363, 455, 543, 749, 906, 1379, 1613
HspAI GCGC 1 cut(s) 1520
KpnI GGTACC 2 cut(s) 262, 1369
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 3 cut(s) 421, 601, 661
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 4 cut(s) 940, 1401, 1462, 1495
LweI GCATC 5 cut(s) 258, 367, 965, 1183, 1234
MaeI CTAG 3 cut(s) 675, 1418, 1523
MaeII ACGT 1 cut(s) 1180
MaeIII GTNAC 4 cut(s) 278, 435, 476, 881
MalI GATC 3 cut(s) 423, 603, 663
MboI GATC 3 cut(s) 421, 601, 661
MboII GAAGA 2 cut(s) 544, 1438
MlsI TGGCCA 1 cut(s) 592
MluCI AATT 8 cut(s) 39, 50, 236, 485, 720, 1399, 1467, 1479
MluNI TGGCCA 1 cut(s) 592
MlyI GAGTC 1 cut(s) 1142
MmeI TCCRAC 2 cut(s) 825, 1338
Mox20I TGGCCA 1 cut(s) 592
MscI TGGCCA 1 cut(s) 592
MseI TTAA 5 cut(s) 93, 465, 719, 1274, 1482
MslI CAYNNNNRTG 1 cut(s) 945
Msp20I TGGCCA 1 cut(s) 592
MspI CCGG 2 cut(s) 650, 1369
MspR9I CCNGG 3 cut(s) 879, 966, 1044
MvaI CCWGG 3 cut(s) 879, 966, 1044
MwoI GCNNNNNNNGC 4 cut(s) 1395, 1412, 1517, 1526
NdeI CATATG 2 cut(s) 670, 754
NdeII GATC 3 cut(s) 421, 601, 661
NheI GCTAGC 1 cut(s) 674
NlaIII CATG 8 cut(s) 305, 363, 455, 543, 749, 906, 1379, 1613
NlaIV GGNNCC 4 cut(s) 260, 399, 738, 1367
NmuCI GTSAC 3 cut(s) 278, 476, 881
NspI RCATGY 2 cut(s) 305, 543
NspV TTCGAA 1 cut(s) 530
PfeI GAWTC 4 cut(s) 520, 576, 874, 1141
PinAI ACCGGT 1 cut(s) 1368
PkrI GCNGC 5 cut(s) 900, 955, 1391, 1477, 1510
PleI GAGTC 1 cut(s) 1142
PpsI GAGTC 1 cut(s) 1142
Psp6I CCWGG 3 cut(s) 877, 964, 1042
PspGI CCWGG 3 cut(s) 877, 964, 1042
PspN4I GGNNCC 4 cut(s) 260, 399, 738, 1367
PspPI GGNCC 4 cut(s) 203, 512, 736, 1199
PstI CTGCAG 1 cut(s) 1391
RsaI GTAC 5 cut(s) 260, 358, 562, 710, 1367
RsaNI GTAC 5 cut(s) 259, 357, 561, 709, 1366
RseI CAYNNNNRTG 1 cut(s) 945
SaqAI TTAA 5 cut(s) 93, 465, 719, 1274, 1482
SatI GCNGC 5 cut(s) 899, 954, 1390, 1476, 1509
Sau3AI GATC 3 cut(s) 421, 601, 661
Sau96I GGNCC 4 cut(s) 203, 512, 736, 1199
SchI GAGTC 1 cut(s) 1142
ScrFI CCNGG 3 cut(s) 879, 966, 1044
SfaNI GCATC 5 cut(s) 258, 367, 965, 1183, 1234
SfcI CTRYAG 1 cut(s) 1387
SfuI TTCGAA 1 cut(s) 530
SinI GGWCC 2 cut(s) 203, 736
SmiMI CAYNNNNRTG 1 cut(s) 945
SmlI CTYRAG 1 cut(s) 495
SmoI CTYRAG 1 cut(s) 495
Sse9I AATT 8 cut(s) 39, 50, 236, 485, 720, 1399, 1467, 1479
SsiI CCGC 3 cut(s) 899, 1286, 1331
SspMI CTAG 3 cut(s) 675, 1418, 1523
StyD4I CCNGG 3 cut(s) 877, 964, 1042
TaaI ACNGT 4 cut(s) 441, 565, 887, 1353
TaiI ACGT 1 cut(s) 1183
TaqI TCGA 2 cut(s) 530, 781
TasI AATT 8 cut(s) 39, 50, 236, 485, 720, 1399, 1467, 1479
TatI WGTACW 1 cut(s) 356
TauI GCSGC 1 cut(s) 901
TfiI GAWTC 4 cut(s) 520, 576, 874, 1141
Tru1I TTAA 5 cut(s) 93, 465, 719, 1274, 1482
Tru9I TTAA 5 cut(s) 93, 465, 719, 1274, 1482
TscAI CASTG 5 cut(s) 431, 446, 1214, 1324, 1509
TseFI GTSAC 3 cut(s) 278, 476, 881
TseI GCWGC 4 cut(s) 953, 1389, 1475, 1508
Tsp45I GTSAC 3 cut(s) 278, 476, 881
TspDTI ATGAA 8 cut(s) 9, 99, 366, 478, 850, 1112, 1157, 1580
TspRI CASTG 5 cut(s) 431, 446, 1214, 1324, 1509
VpaK11BI GGWCC 2 cut(s) 203, 736
XapI RAATTY 4 cut(s) 39, 50, 236, 485
XceI RCATGY 2 cut(s) 305, 543
XspI CTAG 3 cut(s) 675, 1418, 1523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.