Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001402

Physical Location & Seq

Genomic Coordinates Forward (+)

66462805 .. 66464495

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0483300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGAGATGCAAAAGAGAACCCCGAGAGGTCAAAGAATGGTCTTAGTTCCATGTCCATACCAAGGCCACATAAACCCAATGCTTCAGTTGGGTACGTTTCTTCAGTCAAAGGGATTTTCCATTACCATCGTTCACACCCATTTCAACTCTCCAAGCTCTTCAAACCACCCTGAGTTCACATTCATTCCAATTCCAGACGGACTACCTGTTCCTCTAGTCTCATCTGGGAATATACTAGCTATTATGTTGGCTATCAATGCCAATTGCAAAGCGAGTTTCGAACAATGTTTGACTACTCAAGTAATGAAACAAGAGCCGGAGAAGAAGATCACCTGCATCATCTACGATGAATTCATGTACTTCTCTGAAGCTGCTGCTAATTATCTGAAGATTCCAAGCATCATCCTCCGTACTACCAGTGCAGCCAACTTTCATGCTCGTACCACTGTCGTAGAACTTCATTCGAAAGGCCACATTCCCTTCCCAGAGTCTATGTCATTGGACCCGGTGCCCCAACTTCATCCCCTCAGATTCAAGGATCTGCCCATCTCACCCTGGGACACTTTAGAAAATTTTTTGAAACTTGTAGTTAACGTACATGATGTTAGGAGATCTTCGGCCATCATTTGTAATACCACAGACTGCCTTGATCAATCATCACTAGCACGGATCCAAAAATATTGCCAAGTACCGATCTTCTGCATAGGCCCTCTTCACAAAATCACAACAGCTGCCTCTAGTAGTTTACTTGAAGAAGACACAAGCTGCATTAAGTGGCTTGACAAGCAATCTCACAAGTCTGTTATCTATGTCAGTTTGGGGAGTGTAGCATCCATTGGTGAGAAAGAACTAGCAGAAATGGCTTGGGGATTAGCCAACAGCAAGCAACCTTTCTTGTGGGTGATCAGACCTGGCTCCATTACCGGCTCAGATTGGATCGAGCTATTGCCTCAAGAGTTTAGAGAAGCTATTGGAGAAAGAGGTTACATAGTGAAATGGGCACCCCAAAGGGAAGTTTTGGCTCATGGCGCTGTGGGCGCGTTTTGGACCCATTGTGGCTGGAATTCAACTCTTGAAAGCATATCTGAAGGGGTTCCAATGCTTTGCAAACCGTGTTTTAGTGATCAGAAGGTGCATGCAAGGTATGTTAGCACAGTATGGAGACTAGGTTTAGAATTGGAAGATGAGTTTGAGAGAGGAGAGATAGAGAGAGCTATTAGGAAACTTATGGTAAATAGTGATGGGGAGGAAATCAGGGTGAGGGCCAAGGATATGAAGGAAAAAATACTAGTTTCTATGAGCAAGGGTGGATCTAACTACAATTTCTTGAATGAACTTGTGGAATTCATCATGGCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

453

Amino Acids

50.97

Weight (kDa)

6.54

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	261 - 412	1.7e-27	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25650 AT4G25650
fragaria_vesca	FvH4_3g45360 FvH4_3g45360 FvH4_3g45360 FvH4_3g45400 FvH4_3g45401 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02730 FvH4_7g02730 FvH4_7g02731
malus_domestica	MD03G1005500.v1.1 MD11G1008100.v1.1 MD11G1008200.v1.1
prunus_persica	Prupe.6G005300_v2.0.a1 Prupe.6G005300_v2.0.a1
pyrus_communis	pycom03g00570 pycom11g00550
rosa_chinensis	RchiOBHm_Chr1g0321981 RchiOBHm_Chr5g0083181 RchiOBHm_Chr5g0083211
rosa_laevigata	RLG00000030397 RLG00000030398 RLG00000037017
rosa_multiflora	Rmu_sc0007027.1_g000001 Rmu_sc0028710.1_g000001 Rmu_sc0041156.1_g000001 Rmu_sc0042838.1_g000001 Rmu_ssc0000026.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001290 Rroxscaffold_4G00327380
rosa_rugosa	Rorug01G0034800 Rorug05G0482900 Rorug05G0483300
rosa_samantha	Rh1AG047700 Rh1CG051800 Rh1CG052000 Rh1CG052100 Rh1DG056000 Rh1DG056200 Rh1DG056300 Rh5AG532500 Rh5AG532700 Rh5BG559700 Rh5DG568400
rosa_wichuraiana	Rw1G004350 Rw5G050050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	341
AccB1I	GGYRCC	2 cut(s)	508, 1000
AccII	CGCG	1 cut(s)	1040
AclWI	GGATC	5 cut(s)	546, 664, 677, 944, 1318
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	4 cut(s)	350, 571, 1063, 1343
AcuI	CTGAAG	5 cut(s)	68, 86, 387, 407, 1107
AfaI	GTAC	6 cut(s)	94, 359, 412, 442, 597, 690
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	8 cut(s)	145, 162, 535, 580, 752, 1068, 1076, 1330
AhlI	ACTAGT	1 cut(s)	1288
AjnI	CCWGG	2 cut(s)	554, 910
AloI	GAACNNNNNNTCC	2 cut(s)	192, 224
AluBI	AGCT	8 cut(s)	156, 239, 371, 731, 765, 943, 968, 1214
AluI	AGCT	8 cut(s)	156, 239, 371, 731, 765, 943, 968, 1214
Alw26I	GTCTC	2 cut(s)	223, 1156
AlwI	GGATC	5 cut(s)	546, 664, 677, 944, 1318
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	5 cut(s)	64, 469, 618, 706, 1263
ApeKI	GCWGC	5 cut(s)	371, 374, 422, 731, 765
ApoI	RAATTY	4 cut(s)	350, 571, 1063, 1343
Asp700I	GAANNNNTTC	1 cut(s)	1092
AspLEI	GCGC	2 cut(s)	1031, 1040
AspS9I	GGNCC	4 cut(s)	502, 707, 1047, 1263
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	5 cut(s)	322, 543, 851, 913, 1270
AsuII	TTCGAA	2 cut(s)	279, 464
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	2 cut(s)	502, 1047
BaeGI	GKGCMC	2 cut(s)	513, 1003
BamHI	GGATCC	1 cut(s)	669
BanI	GGYRCC	2 cut(s)	508, 1000
BbsI	GAAGAC	1 cut(s)	762
BbvI	GCAGC	5 cut(s)	358, 361, 434, 718, 752
BccI	CCATC	4 cut(s)	134, 554, 629, 1235
BciT130I	CCWGG	2 cut(s)	556, 912
BclI	TGATCA	3 cut(s)	649, 903, 1123
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	2 cut(s)	223, 1156
BcuI	ACTAGT	1 cut(s)	1288
BfaI	CTAG	7 cut(s)	215, 236, 662, 738, 851, 1166, 1289
BfoI	RGCGCY	1 cut(s)	1032
BfuAI	ACCTGC	1 cut(s)	341
BglII	AGATCT	1 cut(s)	611
BisI	GCNGC	5 cut(s)	372, 375, 423, 732, 766
BlsI	GCNGC	5 cut(s)	373, 376, 424, 733, 767
Bme1390I	CCNGG	3 cut(s)	506, 556, 912
Bme18I	GGWCC	2 cut(s)	502, 1047
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	4 cut(s)	502, 707, 1047, 1263
BmiI	GGNNCC	7 cut(s)	504, 510, 671, 916, 1002, 1049, 1095
BmrFI	CCNGG	3 cut(s)	506, 556, 912
BmsI	GCATC	3 cut(s)	345, 408, 839
BpiI	GAAGAC	1 cut(s)	762
Bpu14I	TTCGAA	2 cut(s)	279, 464
BpuEI	CTTGAG	2 cut(s)	282, 936
BpuMI	CCSGG	1 cut(s)	506
BsaJI	CCNNGG	4 cut(s)	61, 554, 555, 1266
BsaXI	ACNNNNNCTCC	2 cut(s)	1153, 1183
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse118I	RCCGGY	1 cut(s)	923
Bse1I	ACTGG	1 cut(s)	417
BseBI	CCWGG	2 cut(s)	556, 912
BseDI	CCNNGG	4 cut(s)	61, 554, 555, 1266
BseGI	GGATG	3 cut(s)	402, 520, 830
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMII	CTCAG	3 cut(s)	162, 541, 942
BseNI	ACTGG	1 cut(s)	417
BseRI	GAGGAG	1 cut(s)	1212
BseSI	GKGCMC	2 cut(s)	513, 1003
BseXI	GCAGC	5 cut(s)	358, 361, 434, 718, 752
BsgI	GTGCAG	1 cut(s)	441
Bsh1236I	CGCG	1 cut(s)	1040
BshFI	GGCC	5 cut(s)	66, 471, 620, 708, 1265
BshNI	GGYRCC	2 cut(s)	508, 1000
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	3 cut(s)	317, 506, 924
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	2 cut(s)	223, 1156
BsmFI	GGGAC	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	1355
BsnI	GGCC	5 cut(s)	66, 471, 620, 708, 1265
BsoBI	CYCGRG	1 cut(s)	22
Bsp119I	TTCGAA	2 cut(s)	279, 464
Bsp1286I	GDGCHC	2 cut(s)	513, 1003
BspANI	GGCC	5 cut(s)	66, 471, 620, 708, 1265
BspCNI	CTCAG	3 cut(s)	163, 540, 941
BspFNI	CGCG	1 cut(s)	1040
BspLI	GGNNCC	7 cut(s)	504, 510, 671, 916, 1002, 1049, 1095
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	5 cut(s)	546, 664, 677, 944, 1318
BspQI	GCTCTTC	1 cut(s)	163
BspT104I	TTCGAA	2 cut(s)	279, 464
BspT107I	GGYRCC	2 cut(s)	508, 1000
BsrFI	RCCGGY	1 cut(s)	923
BsrI	ACTGG	1 cut(s)	417
BssAI	RCCGGY	1 cut(s)	923
BssECI	CCNNGG	4 cut(s)	61, 554, 555, 1266
BssT1I	CCWWGG	2 cut(s)	61, 1266
Bst2UI	CCWGG	2 cut(s)	556, 912
Bst4CI	ACNGT	3 cut(s)	448, 1113, 1156
Bst6I	CTCTTC	2 cut(s)	163, 717
BstBI	TTCGAA	2 cut(s)	279, 464
BstC8I	GCNNGC	2 cut(s)	884, 1137
BstDEI	CTNAG	4 cut(s)	43, 171, 527, 928
BstF5I	GGATG	3 cut(s)	402, 520, 830
BstFNI	CGCG	1 cut(s)	1040
BstH2I	RGCGCY	1 cut(s)	1032
BstHHI	GCGC	2 cut(s)	1031, 1040
BstMAI	GTCTC	2 cut(s)	223, 1156
BstMWI	GCNNNNNNNGC	6 cut(s)	257, 784, 860, 1028, 1035, 1037
BstNI	CCWGG	2 cut(s)	556, 912
BstNSI	RCATGY	1 cut(s)	1139
BstSCI	CCNGG	3 cut(s)	504, 554, 910
BstSLI	GKGCMC	2 cut(s)	513, 1003
BstUI	CGCG	1 cut(s)	1040
BstV1I	GCAGC	5 cut(s)	358, 361, 434, 718, 752
BstV2I	GAAGAC	1 cut(s)	762
BstX2I	RGATCY	4 cut(s)	538, 611, 669, 1310
BstYI	RGATCY	4 cut(s)	538, 611, 669, 1310
BsuRI	GGCC	5 cut(s)	66, 471, 620, 708, 1265
BtsCI	GGATG	3 cut(s)	402, 520, 830
BtsIMutI	CAGTG	2 cut(s)	424, 444
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	2 cut(s)	884, 1137
CfoI	GCGC	2 cut(s)	1031, 1040
Cfr10I	RCCGGY	1 cut(s)	923
Cfr13I	GGNCC	4 cut(s)	502, 707, 1047, 1263
Csp6I	GTAC	6 cut(s)	93, 358, 411, 441, 596, 689
CviAII	CATG	7 cut(s)	51, 355, 434, 599, 1025, 1136, 1351
CviQI	GTAC	6 cut(s)	93, 358, 411, 441, 596, 689
DdeI	CTNAG	4 cut(s)	43, 171, 527, 928
EaeI	YGGCCR	1 cut(s)	618
Eam1104I	CTCTTC	2 cut(s)	163, 717
EarI	CTCTTC	2 cut(s)	163, 717
Eco130I	CCWWGG	2 cut(s)	61, 1266
Eco47I	GGWCC	2 cut(s)	502, 1047
Eco57I	CTGAAG	5 cut(s)	68, 86, 387, 407, 1107
Eco88I	CYCGRG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	707
EcoRI	GAATTC	3 cut(s)	350, 1063, 1343
EcoRII	CCWGG	2 cut(s)	554, 910
EcoT14I	CCWWGG	2 cut(s)	61, 1266
ErhI	CCWWGG	2 cut(s)	61, 1266
FaeI	CATG	7 cut(s)	54, 358, 437, 602, 1028, 1139, 1354
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	7 cut(s)	50, 354, 433, 598, 1024, 1135, 1350
FbaI	TGATCA	3 cut(s)	649, 903, 1123
Fnu4HI	GCNGC	5 cut(s)	372, 375, 423, 732, 766
FokI	GGATG	3 cut(s)	389, 507, 817
Fsp4HI	GCNGC	5 cut(s)	372, 375, 423, 732, 766
FspBI	CTAG	7 cut(s)	215, 236, 662, 738, 851, 1166, 1289
GlaI	GCGC	2 cut(s)	1030, 1039
GluI	GCNGC	5 cut(s)	372, 375, 423, 732, 766
HaeII	RGCGCY	1 cut(s)	1032
HaeIII	GGCC	5 cut(s)	66, 471, 620, 708, 1265
HapII	CCGG	3 cut(s)	317, 506, 924
HhaI	GCGC	2 cut(s)	1031, 1040
Hin1II	CATG	7 cut(s)	54, 358, 437, 602, 1028, 1139, 1354
Hin6I	GCGC	2 cut(s)	1029, 1038
HinP1I	GCGC	2 cut(s)	1029, 1038
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	3 cut(s)	391, 488, 531
HpaI	GTTAAC	1 cut(s)	592
HpaII	CCGG	3 cut(s)	317, 506, 924
HphI	GGTGA	5 cut(s)	322, 543, 851, 913, 1270
Hpy166II	GTNNAC	4 cut(s)	133, 177, 592, 746
Hpy188I	TCNGA	7 cut(s)	367, 387, 530, 908, 931, 1087, 1128
Hpy188III	TCNNGA	4 cut(s)	194, 953, 1073, 1327
Hpy8I	GTNNAC	4 cut(s)	133, 177, 592, 746
HpyAV	CCTTC	4 cut(s)	490, 1082, 1123, 1270
HpyCH4III	ACNGT	3 cut(s)	448, 1113, 1156
HpyCH4IV	ACGT	2 cut(s)	95, 594
HpyCH4V	TGCA	9 cut(s)	10, 267, 336, 422, 702, 768, 1107, 1135, 1139
HpyF10VI	GCNNNNNNNGC	6 cut(s)	257, 784, 860, 1028, 1035, 1037
HpyF3I	CTNAG	4 cut(s)	43, 171, 527, 928
HpySE526I	ACGT	2 cut(s)	95, 594
Hsp92II	CATG	7 cut(s)	54, 358, 437, 602, 1028, 1139, 1354
HspAI	GCGC	2 cut(s)	1029, 1038
Ksp22I	TGATCA	3 cut(s)	649, 903, 1123
KspAI	GTTAAC	1 cut(s)	592
LguI	GCTCTTC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	920
Lsp1109I	GCAGC	5 cut(s)	358, 361, 434, 718, 752
LweI	GCATC	3 cut(s)	345, 408, 839
MaeI	CTAG	7 cut(s)	215, 236, 662, 738, 851, 1166, 1289
MaeII	ACGT	2 cut(s)	95, 594
MaeIII	GTNAC	1 cut(s)	983
MfeI	CAATTG	1 cut(s)	262
MflI	RGATCY	4 cut(s)	538, 611, 669, 1310
MhlI	GDGCHC	2 cut(s)	513, 1003
MluCI	AATT	9 cut(s)	189, 262, 350, 379, 571, 1063, 1175, 1321, 1343
MlyI	GAGTC	1 cut(s)	497
MroXI	GAANNNNTTC	1 cut(s)	1092
MseI	TTAA	2 cut(s)	591, 771
MspA1I	CMGCKG	1 cut(s)	731
MspI	CCGG	3 cut(s)	317, 506, 924
MspR9I	CCNGG	3 cut(s)	506, 556, 912
MunI	CAATTG	1 cut(s)	262
Mva1269I	GAATGC	1 cut(s)	1355
MvaI	CCWGG	2 cut(s)	556, 912
MvnI	CGCG	1 cut(s)	1040
MwoI	GCNNNNNNNGC	6 cut(s)	257, 784, 860, 1028, 1035, 1037
NciI	CCSGG	1 cut(s)	506
NlaIII	CATG	7 cut(s)	54, 358, 437, 602, 1028, 1139, 1354
NlaIV	GGNNCC	7 cut(s)	504, 510, 671, 916, 1002, 1049, 1095
NspI	RCATGY	1 cut(s)	1139
NspV	TTCGAA	2 cut(s)	279, 464
PaeI	GCATGC	1 cut(s)	1139
PaqCI	CACCTGC	1 cut(s)	341
PasI	CCCWGGG	1 cut(s)	555
PciSI	GCTCTTC	1 cut(s)	163
PctI	GAATGC	1 cut(s)	1355
PdmI	GAANNNNTTC	1 cut(s)	1092
PfeI	GAWTC	2 cut(s)	391, 531
PkrI	GCNGC	5 cut(s)	373, 376, 424, 733, 767
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
Psp6I	CCWGG	2 cut(s)	554, 910
PspGI	CCWGG	2 cut(s)	554, 910
PspN4I	GGNNCC	7 cut(s)	504, 510, 671, 916, 1002, 1049, 1095
PspPI	GGNCC	4 cut(s)	502, 707, 1047, 1263
PsuI	RGATCY	4 cut(s)	538, 611, 669, 1310
PvuII	CAGCTG	1 cut(s)	731
RsaI	GTAC	6 cut(s)	94, 359, 412, 442, 597, 690
RsaNI	GTAC	6 cut(s)	93, 358, 411, 441, 596, 689
SapI	GCTCTTC	1 cut(s)	163
SaqAI	TTAA	2 cut(s)	591, 771
SatI	GCNGC	5 cut(s)	372, 375, 423, 732, 766
Sau96I	GGNCC	4 cut(s)	502, 707, 1047, 1263
SchI	GAGTC	1 cut(s)	497
ScrFI	CCNGG	3 cut(s)	506, 556, 912
SduI	GDGCHC	2 cut(s)	513, 1003
SfaNI	GCATC	3 cut(s)	345, 408, 839
SfuI	TTCGAA	2 cut(s)	279, 464
SinI	GGWCC	2 cut(s)	502, 1047
SmlI	CTYRAG	2 cut(s)	297, 951
SmoI	CTYRAG	2 cut(s)	297, 951
SpeI	ACTAGT	1 cut(s)	1288
SphI	GCATGC	1 cut(s)	1139
Sse9I	AATT	9 cut(s)	189, 262, 350, 379, 571, 1063, 1175, 1321, 1343
SspI	AATATT	1 cut(s)	680
SspMI	CTAG	7 cut(s)	215, 236, 662, 738, 851, 1166, 1289
StyD4I	CCNGG	3 cut(s)	504, 554, 910
StyI	CCWWGG	2 cut(s)	61, 1266
TaaI	ACNGT	3 cut(s)	448, 1113, 1156
TaiI	ACGT	2 cut(s)	98, 597
TaqI	TCGA	3 cut(s)	279, 464, 939
TasI	AATT	9 cut(s)	189, 262, 350, 379, 571, 1063, 1175, 1321, 1343
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	2 cut(s)	391, 531
Tru1I	TTAA	2 cut(s)	591, 771
Tru9I	TTAA	2 cut(s)	591, 771
TscAI	CASTG	2 cut(s)	424, 451
TseI	GCWGC	5 cut(s)	371, 374, 422, 731, 765
TspGWI	ACGGA	3 cut(s)	213, 398, 682
TspRI	CASTG	2 cut(s)	424, 451
VpaK11BI	GGWCC	2 cut(s)	502, 1047
XapI	RAATTY	4 cut(s)	350, 571, 1063, 1343
XceI	RCATGY	1 cut(s)	1139
XmnI	GAANNNNTTC	1 cut(s)	1092
XspI	CTAG	7 cut(s)	215, 236, 662, 738, 851, 1166, 1289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.