Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001402

Physical Location & Seq

Genomic Coordinates Reverse (-)

492389 .. 496304

Gene Structure 3916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G005300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGGAAGCTCTGAAAATTTCATCTATTCCTTCACTCCAAATTCCGTCTAAATTTGACAAAGCGCAATCCAAGAAACTCACTTCTTTCTGTTTTAATTCAATACCCAGTTCATCTTTCTCATTAGTTCAAAGAAACATATCAACATTCAAGATTTTCACCACCACATCATCTTCTGTTTCAACTGAGCCTGCAAACCCACCTGAACTAGAGGTTGAAAATCGCACCCAACAAGAGAAATTTGATTGGTATGCCCAATGGTACCCATTGATGCCAGTTTGTGATCTTGACAAGAGGGTGCCACATGCAAAGAAAGTTTTGGGTATTGATGTGGTGGTGTGGTGGGACAGAAATGAGAGTGCTTGGAAGGTGTTTGATGATTCTTGTCCTCACAGATTGGCTCCATTGTCTGAAGGGAGAATTGATCAGTGGGGGAGGCTGCAGTGTGTTTATCATGGCTGGTGTTTTAATGGCTCTGGTGACTGCAAGTTCATCCCTCAAGCACCTGCTGATGGCCCTCCGATTCACACATCCAAGAAAGCATGTGTAGCTGCTTATCCAAGTACTGTGCAGAATGGCATTGTGTGGTTTTGGCCAAATTCCGATCCTCAATACAAAGATGTTCTTGCGGAGAAAAAACCTCCCTACATACCAGAACTAGATGATCCATCGTATTCTGGTTTAATGGGAAATAGAGAGATTCCTTACGGGTATGAGGTCTTGATTGAAAATCTCATGGACCCTGCTCATGTTCCATATGCACATTATGGAATAATGCGAACGAATCAACCCAAAGAGAAGGCCGATAGAGAAGGGGGCAGACCATTGGAATTGAGTGTTCAGAAGTTAGACATAAATGGTTTCATTGCAAAGCAGGAGTGGGGTCGCAGTAAATTTCTGCCACCATGTGTGTTCTACGCTTCTCCCCTTGATCCGGTTGACCAAGGTAATGGTGCTGCATCATCGGCTGGAACCAAAAAGGTGTCATCAGCCCAGCGGAGAGCTCTTCTAATTTTTATCTGCATTCCGGTTAGTCCAGGTAATAGCAGATTGATATGGACCTTCCCAAGAAACTTTGGCGTTTGGATTGATAAGATTGTTCCACGATGGATGTTTCATGTTGGACAAAACCTGATTTTGGACTCAGATTTATATCTTCTTCATGTCGAGGAACGTAAGATAATGGATGCTGGCCCCAACCAGTGGCAGAAAGCATGTTTTGTGCCTACAAAGTCGGATGCCCTTGTGGTTGGTTTCAGAAAATGGTTAATCAAGTATGCTGGTGGTCAGGTAGATTGGAGAGGCAAGTTCAGTGGGGCTCTTCCCCCCACTCCCCCAAGAGAACAGTTGTTGGACAGGTACTGGTCCCATGTGGTGAGCTGCAGCAGTTGCAGTGCAGCACACAAAGGTCTGAGGGTGCTGGAAGTTGTGTTGCAGGTCGTCTCTTTTTCTTTAGTTGGAATTGTTGCTGCAACCAAGCAGGCTGCGTTATCAGTGGCTGCAAGAACTACGCTAGTTGCAATGGCTATACTATCCTTTGCAGCTTCAAAATGGTTGGCTCACTTTATCTACAAACAGTTTCACTTCCACGACTACAACCATGCTCTTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

537

Amino Acids

60.33

Weight (kDa)

8.96

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25650 AT4G25650
fragaria_vesca	FvH4_3g45360 FvH4_3g45360 FvH4_3g45360 FvH4_3g45400 FvH4_3g45401 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02730 FvH4_7g02730 FvH4_7g02731
malus_domestica	MD03G1005500.v1.1 MD11G1008100.v1.1 MD11G1008200.v1.1
prunus_persica	Prupe.6G005300_v2.0.a1 Prupe.6G005300_v2.0.a1
pyrus_communis	pycom03g00570 pycom11g00550
rosa_chinensis	RchiOBHm_Chr1g0321981 RchiOBHm_Chr5g0083181 RchiOBHm_Chr5g0083211
rosa_laevigata	RLG00000030397 RLG00000030398 RLG00000037017
rosa_multiflora	Rmu_sc0007027.1_g000001 Rmu_sc0028710.1_g000001 Rmu_sc0041156.1_g000001 Rmu_sc0042838.1_g000001 Rmu_ssc0000026.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001290 Rroxscaffold_4G00327380
rosa_rugosa	Rorug01G0034800 Rorug05G0482900 Rorug05G0483300
rosa_samantha	Rh1AG047700 Rh1CG051800 Rh1CG052000 Rh1CG052100 Rh1DG056000 Rh1DG056200 Rh1DG056300 Rh5AG532500 Rh5AG532700 Rh5BG559700 Rh5DG568400
rosa_wichuraiana	Rw1G004350 Rw5G050050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	511
Acc36I	ACCTGC	2 cut(s)	511, 1423
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	2 cut(s)	258, 295
AccB7I	CCANNNNNTGG	1 cut(s)	1200
AciI	CCGC	2 cut(s)	626, 994
AclWI	GGATC	3 cut(s)	596, 656, 923
AcoI	YGGCCR	1 cut(s)	590
AcsI	RAATTY	6 cut(s)	15, 39, 50, 236, 595, 890
AcuI	CTGAAG	1 cut(s)	429
AdeI	CACNNNGTG	1 cut(s)	905
AfaI	GTAC	3 cut(s)	260, 562, 1358
AfiI	CCNNNNNNNGG	4 cut(s)	509, 931, 1135, 1200
AgsI	TTSAA	7 cut(s)	99, 128, 148, 180, 215, 725, 1545
AjnI	CCWGG	1 cut(s)	1033
AluBI	AGCT	5 cut(s)	8, 548, 1001, 1377, 1541
AluI	AGCT	5 cut(s)	8, 548, 1001, 1377, 1541
Alw21I	GWGCWC	1 cut(s)	1003
Alw26I	GTCTC	1 cut(s)	1444
AlwI	GGATC	3 cut(s)	596, 656, 923
AlwNI	CAGNNNCTG	2 cut(s)	1359, 1496
AoxI	GGCC	4 cut(s)	511, 590, 798, 1189
ApoI	RAATTY	6 cut(s)	15, 39, 50, 236, 595, 890
Asp718I	GGTACC	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	5 cut(s)	512, 736, 1056, 1190, 1362
AsuHPI	GGTGA	3 cut(s)	148, 488, 1384
AvaII	GGWCC	3 cut(s)	736, 1056, 1362
BalI	TGGCCA	1 cut(s)	592
BanI	GGYRCC	2 cut(s)	258, 295
BanII	GRGCYC	2 cut(s)	1003, 1318
Bbv12I	GWGCWC	1 cut(s)	1003
BccI	CCATC	3 cut(s)	503, 673, 1098
BciT130I	CCWGG	1 cut(s)	1035
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	1444
BfaI	CTAG	3 cut(s)	206, 656, 1511
BfmI	CTRYAG	2 cut(s)	437, 1378
BfuAI	ACCTGC	2 cut(s)	511, 1423
BmcAI	AGTACT	1 cut(s)	562
Bme1390I	CCNGG	1 cut(s)	1035
Bme18I	GGWCC	3 cut(s)	736, 1056, 1362
BmgT120I	GGNCC	5 cut(s)	512, 736, 1056, 1190, 1362
BmiI	GGNNCC	7 cut(s)	260, 297, 399, 738, 970, 1192, 1364
BmrFI	CCNGG	1 cut(s)	1035
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	4 cut(s)	258, 965, 1174, 1225
BmuI	ACTGGG	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	480
BsaBI	GATNNNNATC	1 cut(s)	1149
BsaJI	CCNNGG	1 cut(s)	940
BsaWI	WCCGGW	2 cut(s)	931, 1024
Bsc4I	CCNNNNNNNGG	4 cut(s)	509, 931, 1135, 1200
Bse1I	ACTGG	4 cut(s)	105, 272, 1198, 1364
Bse3DI	GCAATG	2 cut(s)	861, 1524
Bse8I	GATNNNNATC	1 cut(s)	1149
BseBI	CCWGG	1 cut(s)	1035
BseDI	CCNNGG	1 cut(s)	940
BseGI	GGATG	5 cut(s)	489, 527, 1113, 1189, 1240
BseJI	GATNNNNATC	1 cut(s)	1149
BseLI	CCNNNNNNNGG	4 cut(s)	509, 931, 1135, 1200
BseMI	GCAATG	2 cut(s)	861, 1524
BseMII	CTCAG	3 cut(s)	174, 1155, 1400
BseNI	ACTGG	4 cut(s)	105, 272, 1198, 1364
BseYI	CCCAGC	1 cut(s)	990
BsgI	GTGCAG	2 cut(s)	587, 1413
BshFI	GGCC	4 cut(s)	513, 592, 800, 1191
BshNI	GGYRCC	2 cut(s)	258, 295
BsiHKAI	GWGCWC	1 cut(s)	1003
BsiSI	CCGG	2 cut(s)	932, 1025
BslFI	GGGAC	2 cut(s)	356, 1348
BslI	CCNNNNNNNGG	4 cut(s)	509, 931, 1135, 1200
BsmAI	GTCTC	1 cut(s)	1444
BsmBI	CGTCTC	1 cut(s)	1444
BsmFI	GGGAC	2 cut(s)	356, 1348
BsmI	GAATGC	1 cut(s)	1020
BsnI	GGCC	4 cut(s)	513, 592, 800, 1191
Bsp1286I	GDGCHC	2 cut(s)	1003, 1318
Bsp143I	GATC	5 cut(s)	280, 421, 601, 661, 928
BspACI	CCGC	2 cut(s)	626, 994
BspANI	GGCC	4 cut(s)	513, 592, 800, 1191
BspCNI	CTCAG	3 cut(s)	175, 1154, 1401
BspLI	GGNNCC	7 cut(s)	260, 297, 399, 738, 970, 1192, 1364
BspMAI	CTGCAG	2 cut(s)	441, 1382
BspMI	ACCTGC	2 cut(s)	511, 1423
BspPI	GGATC	3 cut(s)	596, 656, 923
BspQI	GCTCTTC	3 cut(s)	1008, 1323, 1608
BspT107I	GGYRCC	2 cut(s)	258, 295
BsrDI	GCAATG	2 cut(s)	861, 1524
BsrI	ACTGG	4 cut(s)	105, 272, 1198, 1364
BssECI	CCNNGG	1 cut(s)	940
BssMI	GATC	5 cut(s)	280, 421, 601, 661, 928
BssT1I	CCWWGG	1 cut(s)	940
Bst2UI	CCWGG	1 cut(s)	1035
Bst4CI	ACNGT	3 cut(s)	565, 1344, 1575
Bst6I	CTCTTC	3 cut(s)	1008, 1323, 1608
BstAPI	GCANNNNNTGC	1 cut(s)	1386
BstC8I	GCNNGC	3 cut(s)	189, 1189, 1479
BstDEI	CTNAG	3 cut(s)	183, 1141, 1409
BstF5I	GGATG	5 cut(s)	489, 527, 1113, 1189, 1240
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	5 cut(s)	283, 424, 604, 664, 931
BstMAI	GTCTC	1 cut(s)	1444
BstMBI	GATC	5 cut(s)	280, 421, 601, 661, 928
BstMWI	GCNNNNNNNGC	3 cut(s)	545, 962, 1386
BstNI	CCWGG	1 cut(s)	1035
BstNSI	RCATGY	3 cut(s)	305, 543, 1215
BstSCI	CCNGG	1 cut(s)	1033
BstSFI	CTRYAG	2 cut(s)	437, 1378
BstXI	CCANNNNNNTGG	1 cut(s)	947
BsuRI	GGCC	4 cut(s)	513, 592, 800, 1191
BtsCI	GGATG	5 cut(s)	489, 527, 1113, 1189, 1240
BtsI	GCAGTG	2 cut(s)	446, 1396
BtsIMutI	CAGTG	6 cut(s)	431, 446, 1205, 1315, 1396, 1497
BveI	ACCTGC	2 cut(s)	511, 1423
Cac8I	GCNNGC	3 cut(s)	189, 1189, 1479
CaiI	CAGNNNCTG	2 cut(s)	1359, 1496
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	5 cut(s)	512, 736, 1056, 1190, 1362
Csp6I	GTAC	3 cut(s)	259, 561, 1357
CspCI	CAANNNNNGTGG	2 cut(s)	1291, 1326
CviQI	GTAC	3 cut(s)	259, 561, 1357
DdeI	CTNAG	3 cut(s)	183, 1141, 1409
DpnI	GATC	5 cut(s)	282, 423, 603, 663, 930
DpnII	GATC	5 cut(s)	280, 421, 601, 661, 928
DraIII	CACNNNGTG	1 cut(s)	905
EaeI	YGGCCR	1 cut(s)	590
Eam1104I	CTCTTC	3 cut(s)	1008, 1323, 1608
EarI	CTCTTC	3 cut(s)	1008, 1323, 1608
Ecl136II	GAGCTC	1 cut(s)	1001
Eco130I	CCWWGG	1 cut(s)	940
Eco24I	GRGCYC	2 cut(s)	1003, 1318
Eco47I	GGWCC	3 cut(s)	736, 1056, 1362
Eco53kI	GAGCTC	1 cut(s)	1001
Eco57I	CTGAAG	1 cut(s)	429
EcoICRI	GAGCTC	1 cut(s)	1001
EcoRII	CCWGG	1 cut(s)	1033
EcoT14I	CCWWGG	1 cut(s)	940
EcoT38I	GRGCYC	2 cut(s)	1003, 1318
ErhI	CCWWGG	1 cut(s)	940
Esp3I	CGTCTC	1 cut(s)	1444
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FaqI	GGGAC	2 cut(s)	356, 1348
FauNDI	CATATG	1 cut(s)	754
FbaI	TGATCA	1 cut(s)	421
FokI	GGATG	5 cut(s)	476, 514, 1120, 1196, 1247
FriOI	GRGCYC	2 cut(s)	1003, 1318
FspBI	CTAG	3 cut(s)	206, 656, 1511
GlaI	GCGC	1 cut(s)	63
GsaI	CCCAGC	1 cut(s)	994
HaeIII	GGCC	4 cut(s)	513, 592, 800, 1191
HapII	CCGG	2 cut(s)	932, 1025
HhaI	GCGC	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	1 cut(s)	937
HindII	GTYRAC	1 cut(s)	937
HinfI	GANTC	5 cut(s)	377, 520, 697, 781, 1139
HpaII	CCGG	2 cut(s)	932, 1025
HphI	GGTGA	3 cut(s)	148, 488, 1384
Hpy166II	GTNNAC	1 cut(s)	937
Hpy188I	TCNGA	9 cut(s)	12, 409, 519, 601, 840, 1144, 1234, 1256, 1410
Hpy188III	TCNNGA	3 cut(s)	148, 284, 718
Hpy8I	GTNNAC	1 cut(s)	937
HpyAV	CCTTC	6 cut(s)	39, 358, 404, 790, 803, 1069
HpyCH4III	ACNGT	3 cut(s)	565, 1344, 1575
HpyCH4IV	ACGT	1 cut(s)	1171
HpyF10VI	GCNNNNNNNGC	3 cut(s)	545, 962, 1386
HpyF3I	CTNAG	3 cut(s)	183, 1141, 1409
HpySE526I	ACGT	1 cut(s)	1171
HspAI	GCGC	1 cut(s)	62
KpnI	GGTACC	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	5 cut(s)	280, 421, 601, 661, 928
LguI	GCTCTTC	3 cut(s)	1008, 1323, 1608
LmnI	GCTCC	1 cut(s)	403
LweI	GCATC	4 cut(s)	258, 965, 1174, 1225
MaeI	CTAG	3 cut(s)	206, 656, 1511
MaeII	ACGT	1 cut(s)	1171
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	5 cut(s)	282, 423, 603, 663, 930
MboI	GATC	5 cut(s)	280, 421, 601, 661, 928
MboII	GAAGA	6 cut(s)	162, 995, 1145, 1148, 1310, 1595
MhlI	GDGCHC	2 cut(s)	1003, 1318
MlsI	TGGCCA	1 cut(s)	592
MluNI	TGGCCA	1 cut(s)	592
MlyI	GAGTC	1 cut(s)	1133
MmeI	TCCRAC	4 cut(s)	1099, 1212, 1329, 1435
Mox20I	TGGCCA	1 cut(s)	592
MscI	TGGCCA	1 cut(s)	592
MseI	TTAA	4 cut(s)	93, 465, 680, 1265
Msp20I	TGGCCA	1 cut(s)	592
MspA1I	CMGCKG	1 cut(s)	994
MspI	CCGG	2 cut(s)	932, 1025
MspR9I	CCNGG	1 cut(s)	1035
Mva1269I	GAATGC	1 cut(s)	1020
MvaI	CCWGG	1 cut(s)	1035
MwoI	GCNNNNNNNGC	3 cut(s)	545, 962, 1386
NdeI	CATATG	1 cut(s)	754
NdeII	GATC	5 cut(s)	280, 421, 601, 661, 928
NlaIV	GGNNCC	7 cut(s)	260, 297, 399, 738, 970, 1192, 1364
NmuCI	GTSAC	1 cut(s)	476
NspI	RCATGY	3 cut(s)	305, 543, 1215
PaqCI	CACCTGC	1 cut(s)	511
PciSI	GCTCTTC	3 cut(s)	1008, 1323, 1608
PctI	GAATGC	1 cut(s)	1020
PfeI	GAWTC	4 cut(s)	377, 520, 697, 781
PflMI	CCANNNNNTGG	1 cut(s)	1200
PleI	GAGTC	1 cut(s)	1133
PpsI	GAGTC	1 cut(s)	1133
Psp124BI	GAGCTC	1 cut(s)	1003
Psp6I	CCWGG	1 cut(s)	1033
PspFI	CCCAGC	1 cut(s)	990
PspGI	CCWGG	1 cut(s)	1033
PspN4I	GGNNCC	7 cut(s)	260, 297, 399, 738, 970, 1192, 1364
PspPI	GGNCC	5 cut(s)	512, 736, 1056, 1190, 1362
PstI	CTGCAG	2 cut(s)	441, 1382
PstNI	CAGNNNCTG	2 cut(s)	1359, 1496
RsaI	GTAC	3 cut(s)	260, 562, 1358
RsaNI	GTAC	3 cut(s)	259, 561, 1357
SacI	GAGCTC	1 cut(s)	1003
SapI	GCTCTTC	3 cut(s)	1008, 1323, 1608
SaqAI	TTAA	4 cut(s)	93, 465, 680, 1265
Sau3AI	GATC	5 cut(s)	280, 421, 601, 661, 928
Sau96I	GGNCC	5 cut(s)	512, 736, 1056, 1190, 1362
ScaI	AGTACT	1 cut(s)	562
SchI	GAGTC	1 cut(s)	1133
ScrFI	CCNGG	1 cut(s)	1035
SduI	GDGCHC	2 cut(s)	1003, 1318
SfaNI	GCATC	4 cut(s)	258, 965, 1174, 1225
SfcI	CTRYAG	2 cut(s)	437, 1378
SinI	GGWCC	3 cut(s)	736, 1056, 1362
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
SsiI	CCGC	2 cut(s)	626, 994
SspMI	CTAG	3 cut(s)	206, 656, 1511
SstI	GAGCTC	1 cut(s)	1003
StyD4I	CCNGG	1 cut(s)	1033
StyI	CCWWGG	1 cut(s)	940
TaaI	ACNGT	3 cut(s)	565, 1344, 1575
TaiI	ACGT	1 cut(s)	1174
TaqI	TCGA	1 cut(s)	1164
TatI	WGTACW	1 cut(s)	560
TfiI	GAWTC	4 cut(s)	377, 520, 697, 781
Tru1I	TTAA	4 cut(s)	93, 465, 680, 1265
Tru9I	TTAA	4 cut(s)	93, 465, 680, 1265
TscAI	CASTG	6 cut(s)	431, 446, 1205, 1315, 1396, 1497
TseFI	GTSAC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	6 cut(s)	9, 99, 478, 850, 1103, 1148
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	6 cut(s)	431, 446, 1205, 1315, 1396, 1497
Van91I	CCANNNNNTGG	1 cut(s)	1200
VpaK11BI	GGWCC	3 cut(s)	736, 1056, 1362
XapI	RAATTY	6 cut(s)	15, 39, 50, 236, 595, 890
XceI	RCATGY	3 cut(s)	305, 543, 1215
XspI	CTAG	3 cut(s)	206, 656, 1511
ZrmI	AGTACT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.