FvH4_7g02730

Protochlorophyllide-dependent translocon component 52

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
3023897 .. 3027360
3464 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02730.t1

Sequence Viewer

Length: 1392 bp
ATGGCAACTCTAAGAATTTCCTCCATTCATCCAACACTACAAGCTCCGGCCAACTTTGATAAAACCCAATCCCAAAAGTTCACTTCCTTGGAGTATAAGCAGACACTCACTTCATCGTTCTCATTAGTTCAAAGACACAAACCCTCATTCAAGACATTCACCACCATATCATCATCTTCTATTACTACTGAGACTGCAAATAACTCATCTGCAGTACCACAAGTTGAAACTCAGACCCAAGGTGAGAAATTTGACTGGTATGCCCATTGGTACCCGTTGATGCCGGTTTGTGACCTTGACAAAAGGGTGCCGCATGCAAAGAAGGTTTTAGGTATTGATGTGGTGGTGTGGTGGGACAGAAACGGAAGTGCATGGAAGGTGTTTGATGATGCATGTCCTCACAGACTGGCTCCATTATCGGAAGGGAGGATTGATCAATGGGGAAGGCTGCAGTGTGTTTATCATGGCTGGTGTTTTAATGGCTCCGGTGACTGCAAGTTTATCCCTCAGGCACCTACCGATGGTCCTCCGGTGCACACATCCAAGAAAGCATGTGTAGGTTCTTATCCAAGTACTGTCCAGAATGGAATAGTGTGGTTCTGGCCAAGTTCGGATCCTCAATACAAGGACATTCTTGCAGAGAAAAAACCTCCCTACATTCCAGAAATGGATGATCCGTCCTATACTTGCCTGATGGCAAGTAGAGAGCTCCCTTATGGGTATGAGGTCTTGATTGAAAATCTAATGGATCCTGCTCATGCCCCATACGCACATTATGGAATAATGCCAACTCAAGAACCAGAAGAGAAGGCTGATAGAGAAGGGGGCAGACCAATGGACTTGCATATTTCTAAGTTAGACATAAACGGTTTCACCGTAGATGACCAGAATTCAGGTCAGAGCAAATATGTACCACCATGTCTGTTTTATTCATCTCTTATCGGTCCAATTGACAATAGTAATGGAGCTGCACTGTCGGGAAAATTGTACGGTTTTGTGAAACCACCTGGAAATGGAAAGGTGTCAGCCACAAGTAGAGCTCTTTTAGTTTTCTTCTGCGTTCCCGTTAGTCCAGGTTATAGCAGACTGATAACGACACACCCAATAAACTTTGGTCTCTGGGTTAAGATTCGTCCGCGATGGCTAAGTCACACTCGACTCAACCTGATTTTGGACTCAGACTTGTACTTGCTTCATCTTGAGGAACGTCGGATGATGGATGCTGGTACTCAGTGGCAGAAGGCCTGTTTTGTGCCAACAAAGTCAGATGTCGTTGTCGTTGCTTACCGGAAGTGGATAAACCAGTATGCGGGTGGTCAGGTAGATTGGAGAGGCAAGTACACCGGGGAGCTTCCCCCCACTCCTCCTAAAGAACAATTGATGGACAGGTAA

Protein Analysis

464

Amino Acids

52.19

Weight (kDa)

7.95

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske PF00355 89 - 173 1.3e-23 Rieske [2Fe-2S] domain
PaO PF08417 304 - 412 1.3e-19 Pheophorbide a oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 270
AccB1I GGYRCC 3 cut(s) 270, 307, 511
AccII CGCG 1 cut(s) 1138
AciI CCGC 3 cut(s) 311, 1136, 1310
AclWI GGATC 5 cut(s) 608, 621, 668, 743, 756
AcoI YGGCCR 2 cut(s) 48, 602
AcsI RAATTY 3 cut(s) 15, 248, 889
AfaI GTAC 8 cut(s) 216, 272, 574, 912, 989, 1187, 1228, 1340
AfiI CCNNNNNNNGG 4 cut(s) 521, 1013, 1171, 1309
AgsI TTSAA 4 cut(s) 131, 151, 227, 737
AjnI CCWGG 2 cut(s) 1006, 1072
AluBI AGCT 5 cut(s) 44, 709, 968, 1040, 1351
AluI AGCT 5 cut(s) 44, 709, 968, 1040, 1351
Alw21I GWGCWC 3 cut(s) 537, 711, 1042
Alw26I GTCTC 2 cut(s) 185, 1121
Alw44I GTGCAC 1 cut(s) 533
AlwI GGATC 5 cut(s) 608, 621, 668, 743, 756
AoxI GGCC 3 cut(s) 48, 602, 1242
ApaLI GTGCAC 1 cut(s) 533
ApeKI GCWGC 2 cut(s) 448, 968
ApoI RAATTY 3 cut(s) 15, 248, 889
Asp718I GGTACC 1 cut(s) 270
AspS9I GGNCC 2 cut(s) 524, 944
AsuC2I CCSGG 1 cut(s) 1345
AsuHPI GGTGA 4 cut(s) 151, 254, 500, 865
AvaII GGWCC 2 cut(s) 524, 944
AxyI CCTNAGG 1 cut(s) 507
BaeGI GKGCMC 1 cut(s) 537
BalI TGGCCA 1 cut(s) 604
BamHI GGATCC 2 cut(s) 613, 748
BanI GGYRCC 3 cut(s) 270, 307, 511
BanII GRGCYC 2 cut(s) 711, 1042
Bbv12I GWGCWC 3 cut(s) 537, 711, 1042
BbvI GCAGC 2 cut(s) 435, 955
BccI CCATC 5 cut(s) 515, 688, 1134, 1210, 1375
BciT130I CCWGG 2 cut(s) 1008, 1074
BclI TGATCA 1 cut(s) 433
BcnI CCSGG 1 cut(s) 1345
BcoDI GTCTC 2 cut(s) 185, 1121
BfmI CTRYAG 2 cut(s) 210, 449
BisI GCNGC 3 cut(s) 311, 449, 969
BlsI GCNGC 3 cut(s) 312, 450, 970
BmcAI AGTACT 1 cut(s) 574
Bme1390I CCNGG 3 cut(s) 1008, 1074, 1345
Bme18I GGWCC 2 cut(s) 524, 944
BmgT120I GGNCC 2 cut(s) 524, 944
BmiI GGNNCC 7 cut(s) 272, 309, 411, 484, 513, 615, 750
BmrFI CCNGG 3 cut(s) 1008, 1074, 1345
BmsI GCATC 3 cut(s) 270, 379, 1210
BpuEI CTTGAG 2 cut(s) 777, 1220
BpuMI CCSGG 1 cut(s) 1345
BsaI GGTCTC 1 cut(s) 1121
BsaJI CCNNGG 3 cut(s) 87, 238, 1344
BsaWI WCCGGW 3 cut(s) 485, 529, 1287
Bsc4I CCNNNNNNNGG 4 cut(s) 521, 1013, 1171, 1309
Bse118I RCCGGY 1 cut(s) 283
Bse1I ACTGG 3 cut(s) 260, 411, 1303
Bse21I CCTNAGG 1 cut(s) 507
BseBI CCWGG 2 cut(s) 1008, 1074
BseDI CCNNGG 3 cut(s) 87, 238, 1344
BseGI GGATG 5 cut(s) 28, 539, 676, 1218, 1225
BseLI CCNNNNNNNGG 4 cut(s) 521, 1013, 1171, 1309
BseMII CTCAG 5 cut(s) 180, 245, 521, 1191, 1244
BseNI ACTGG 3 cut(s) 260, 411, 1303
BseRI GAGGAG 1 cut(s) 1353
BseSI GKGCMC 1 cut(s) 537
BseXI GCAGC 2 cut(s) 435, 955
BsgI GTGCAG 1 cut(s) 954
Bsh1236I CGCG 1 cut(s) 1138
BshFI GGCC 3 cut(s) 50, 604, 1244
BshNI GGYRCC 3 cut(s) 270, 307, 511
BsiHKAI GWGCWC 3 cut(s) 537, 711, 1042
BsiSI CCGG 6 cut(s) 47, 284, 486, 530, 1288, 1344
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 4 cut(s) 521, 1013, 1171, 1309
BsmAI GTCTC 2 cut(s) 185, 1121
BsmFI GGGAC 1 cut(s) 368
BsnI GGCC 3 cut(s) 50, 604, 1244
Bso31I GGTCTC 1 cut(s) 1121
Bsp1286I GDGCHC 3 cut(s) 537, 711, 1042
Bsp143I GATC 4 cut(s) 433, 613, 673, 748
BspACI CCGC 3 cut(s) 311, 1136, 1310
BspANI GGCC 3 cut(s) 50, 604, 1244
BspCNI CTCAG 5 cut(s) 181, 244, 520, 1190, 1243
BspFNI CGCG 1 cut(s) 1138
BspLI GGNNCC 7 cut(s) 272, 309, 411, 484, 513, 615, 750
BspMAI CTGCAG 2 cut(s) 214, 453
BspPI GGATC 5 cut(s) 608, 621, 668, 743, 756
BspT107I GGYRCC 3 cut(s) 270, 307, 511
BspTNI GGTCTC 1 cut(s) 1121
BsrFI RCCGGY 1 cut(s) 283
BsrI ACTGG 3 cut(s) 260, 411, 1303
BssAI RCCGGY 1 cut(s) 283
BssECI CCNNGG 3 cut(s) 87, 238, 1344
BssMI GATC 4 cut(s) 433, 613, 673, 748
BssT1I CCWWGG 2 cut(s) 87, 238
Bst2UI CCWGG 2 cut(s) 1008, 1074
Bst4CI ACNGT 5 cut(s) 577, 869, 877, 975, 992
Bst6I CTCTTC 1 cut(s) 798
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 8 cut(s) 11, 189, 231, 507, 852, 1145, 1177, 1230
BstF5I GGATG 5 cut(s) 28, 539, 676, 1218, 1225
BstFNI CGCG 1 cut(s) 1138
BstKTI GATC 4 cut(s) 436, 616, 676, 751
BstMAI GTCTC 2 cut(s) 185, 1121
BstMBI GATC 4 cut(s) 433, 613, 673, 748
BstMWI GCNNNNNNNGC 1 cut(s) 767
BstNI CCWGG 2 cut(s) 1008, 1074
BstNSI RCATGY 3 cut(s) 317, 396, 555
BstSCI CCNGG 3 cut(s) 1006, 1072, 1343
BstSFI CTRYAG 2 cut(s) 210, 449
BstSLI GKGCMC 1 cut(s) 537
BstUI CGCG 1 cut(s) 1138
BstV1I GCAGC 2 cut(s) 435, 955
BstX2I RGATCY 2 cut(s) 613, 748
BstYI RGATCY 2 cut(s) 613, 748
Bsu36I CCTNAGG 1 cut(s) 507
BsuRI GGCC 3 cut(s) 50, 604, 1244
BtgZI GCGATG 1 cut(s) 1153
BtsCI GGATG 5 cut(s) 28, 539, 676, 1218, 1225
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 3 cut(s) 458, 971, 1238
Cac8I GCNNGC 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 283
Cfr13I GGNCC 2 cut(s) 524, 944
Csp6I GTAC 8 cut(s) 215, 271, 573, 911, 988, 1186, 1227, 1339
CviAII CATG 7 cut(s) 314, 372, 393, 464, 552, 758, 918
CviQI GTAC 8 cut(s) 215, 271, 573, 911, 988, 1186, 1227, 1339
DdeI CTNAG 8 cut(s) 11, 189, 231, 507, 852, 1145, 1177, 1230
DpnI GATC 4 cut(s) 435, 615, 675, 750
DpnII GATC 4 cut(s) 433, 613, 673, 748
EaeI YGGCCR 2 cut(s) 48, 602
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
Ecl136II GAGCTC 2 cut(s) 709, 1040
Eco130I CCWWGG 2 cut(s) 87, 238
Eco147I AGGCCT 1 cut(s) 1244
Eco24I GRGCYC 2 cut(s) 711, 1042
Eco31I GGTCTC 1 cut(s) 1121
Eco47I GGWCC 2 cut(s) 524, 944
Eco53kI GAGCTC 2 cut(s) 709, 1040
Eco81I CCTNAGG 1 cut(s) 507
EcoICRI GAGCTC 2 cut(s) 709, 1040
EcoRI GAATTC 1 cut(s) 889
EcoRII CCWGG 2 cut(s) 1006, 1072
EcoT14I CCWWGG 2 cut(s) 87, 238
EcoT22I ATGCAT 1 cut(s) 394
EcoT38I GRGCYC 2 cut(s) 711, 1042
ErhI CCWWGG 2 cut(s) 87, 238
FaeI CATG 7 cut(s) 317, 375, 396, 467, 555, 761, 921
FaqI GGGAC 1 cut(s) 368
FatI CATG 7 cut(s) 313, 371, 392, 463, 551, 757, 917
FauI CCCGC 1 cut(s) 1303
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 3 cut(s) 311, 449, 969
FokI GGATG 5 cut(s) 15, 526, 683, 1225, 1232
FriOI GRGCYC 2 cut(s) 711, 1042
Fsp4HI GCNGC 3 cut(s) 311, 449, 969
GluI GCNGC 3 cut(s) 311, 449, 969
HaeIII GGCC 3 cut(s) 50, 604, 1244
HapII CCGG 6 cut(s) 47, 284, 486, 530, 1288, 1344
Hin1II CATG 7 cut(s) 317, 375, 396, 467, 555, 761, 921
HinfI GANTC 3 cut(s) 1129, 1158, 1175
HpaII CCGG 6 cut(s) 47, 284, 486, 530, 1288, 1344
HphI GGTGA 4 cut(s) 151, 254, 500, 865
Hpy166II GTNNAC 3 cut(s) 81, 535, 1341
Hpy188I TCNGA 7 cut(s) 234, 421, 613, 900, 1180, 1212, 1267
Hpy188III TCNNGA 7 cut(s) 151, 580, 662, 730, 794, 978, 1199
Hpy8I GTNNAC 3 cut(s) 81, 535, 1341
Hpy99I CGWCG 1 cut(s) 1212
HpyAV CCTTC 7 cut(s) 316, 370, 416, 438, 802, 815, 1234
HpyCH4III ACNGT 5 cut(s) 577, 869, 877, 975, 992
HpyCH4IV ACGT 1 cut(s) 1207
HpyF10VI GCNNNNNNNGC 1 cut(s) 767
HpyF3I CTNAG 8 cut(s) 11, 189, 231, 507, 852, 1145, 1177, 1230
HpySE526I ACGT 1 cut(s) 1207
Hsp92II CATG 7 cut(s) 317, 375, 396, 467, 555, 761, 921
KpnI GGTACC 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 4 cut(s) 433, 613, 673, 748
LmnI GCTCC 6 cut(s) 49, 415, 488, 714, 965, 1348
Lsp1109I GCAGC 2 cut(s) 435, 955
LweI GCATC 3 cut(s) 270, 379, 1210
MaeII ACGT 1 cut(s) 1207
MaeIII GTNAC 3 cut(s) 290, 488, 1148
MalI GATC 4 cut(s) 435, 615, 675, 750
MboI GATC 4 cut(s) 433, 613, 673, 748
MboII GAAGA 3 cut(s) 168, 815, 1045
MfeI CAATTG 2 cut(s) 948, 1376
MflI RGATCY 2 cut(s) 613, 748
MhlI GDGCHC 3 cut(s) 537, 711, 1042
MlsI TGGCCA 1 cut(s) 604
MluCI AATT 6 cut(s) 15, 248, 889, 948, 983, 1376
MluNI TGGCCA 1 cut(s) 604
MlyI GAGTC 2 cut(s) 1152, 1169
MmeI TCCRAC 2 cut(s) 56, 1190
Mox20I TGGCCA 1 cut(s) 604
Mph1103I ATGCAT 1 cut(s) 394
MscI TGGCCA 1 cut(s) 604
MseI TTAA 2 cut(s) 477, 1125
Msp20I TGGCCA 1 cut(s) 604
MspI CCGG 6 cut(s) 47, 284, 486, 530, 1288, 1344
MspR9I CCNGG 3 cut(s) 1008, 1074, 1345
MunI CAATTG 2 cut(s) 948, 1376
MvaI CCWGG 2 cut(s) 1008, 1074
MvnI CGCG 1 cut(s) 1138
MwoI GCNNNNNNNGC 1 cut(s) 767
NciI CCSGG 1 cut(s) 1345
NdeII GATC 4 cut(s) 433, 613, 673, 748
NlaIII CATG 7 cut(s) 317, 375, 396, 467, 555, 761, 921
NlaIV GGNNCC 7 cut(s) 272, 309, 411, 484, 513, 615, 750
NmuCI GTSAC 3 cut(s) 290, 488, 1148
NsiI ATGCAT 1 cut(s) 394
NspI RCATGY 3 cut(s) 317, 396, 555
PaeI GCATGC 1 cut(s) 317
PceI AGGCCT 1 cut(s) 1244
PcsI WCGNNNNNNNCGW 1 cut(s) 873
PfeI GAWTC 1 cut(s) 1129
PkrI GCNGC 3 cut(s) 312, 450, 970
PleI GAGTC 2 cut(s) 1152, 1169
PpsI GAGTC 2 cut(s) 1152, 1169
Psp124BI GAGCTC 2 cut(s) 711, 1042
Psp6I CCWGG 2 cut(s) 1006, 1072
PspGI CCWGG 2 cut(s) 1006, 1072
PspN4I GGNNCC 7 cut(s) 272, 309, 411, 484, 513, 615, 750
PspPI GGNCC 2 cut(s) 524, 944
PstI CTGCAG 2 cut(s) 214, 453
PsuI RGATCY 2 cut(s) 613, 748
RsaI GTAC 8 cut(s) 216, 272, 574, 912, 989, 1187, 1228, 1340
RsaNI GTAC 8 cut(s) 215, 271, 573, 911, 988, 1186, 1227, 1339
SacI GAGCTC 2 cut(s) 711, 1042
SaqAI TTAA 2 cut(s) 477, 1125
SatI GCNGC 3 cut(s) 311, 449, 969
Sau3AI GATC 4 cut(s) 433, 613, 673, 748
Sau96I GGNCC 2 cut(s) 524, 944
ScaI AGTACT 1 cut(s) 574
SchI GAGTC 2 cut(s) 1152, 1169
ScrFI CCNGG 3 cut(s) 1008, 1074, 1345
SduI GDGCHC 3 cut(s) 537, 711, 1042
SfaNI GCATC 3 cut(s) 270, 379, 1210
SfcI CTRYAG 2 cut(s) 210, 449
SinI GGWCC 2 cut(s) 524, 944
SmlI CTYRAG 2 cut(s) 792, 1199
SmoI CTYRAG 2 cut(s) 792, 1199
SphI GCATGC 1 cut(s) 317
Sse9I AATT 6 cut(s) 15, 248, 889, 948, 983, 1376
SseBI AGGCCT 1 cut(s) 1244
SsiI CCGC 3 cut(s) 311, 1136, 1310
SstI GAGCTC 2 cut(s) 711, 1042
StuI AGGCCT 1 cut(s) 1244
StyD4I CCNGG 3 cut(s) 1006, 1072, 1343
StyI CCWWGG 2 cut(s) 87, 238
TaaI ACNGT 5 cut(s) 577, 869, 877, 975, 992
TaiI ACGT 1 cut(s) 1210
TaqI TCGA 1 cut(s) 1156
TaqII GACCGA 1 cut(s) 932
TasI AATT 6 cut(s) 15, 248, 889, 948, 983, 1376
TatI WGTACW 3 cut(s) 572, 1185, 1338
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 1 cut(s) 1129
Tru1I TTAA 2 cut(s) 477, 1125
Tru9I TTAA 2 cut(s) 477, 1125
TscAI CASTG 3 cut(s) 458, 978, 1238
TseFI GTSAC 3 cut(s) 290, 488, 1148
TseI GCWGC 2 cut(s) 448, 968
Tsp45I GTSAC 3 cut(s) 290, 488, 1148
TspDTI ATGAA 4 cut(s) 17, 102, 921, 1184
TspGWI ACGGA 2 cut(s) 378, 666
TspRI CASTG 3 cut(s) 458, 978, 1238
VneI GTGCAC 1 cut(s) 533
VpaK11BI GGWCC 2 cut(s) 524, 944
XapI RAATTY 3 cut(s) 15, 248, 889
XceI RCATGY 3 cut(s) 317, 396, 555
XcmI CCANNNNNNNNNTGG 1 cut(s) 1310
ZrmI AGTACT 1 cut(s) 574
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.