Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001402

Physical Location & Seq

Genomic Coordinates Reverse (-)

449950 .. 456043

Gene Structure 6094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00570.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTTTCATATTGGACACAATCTGGTTCTGGACTCCGATTTATGTCTTCTTCATGTTGAGGAACGTAAGATAATGGAAGCCGGCCCTGCCCAGTGGCAGAAAGCATGTTTTGTGCCAACAAAGTCAGATGCCCTTGTGGTTGGTTTCAGAAAATGGTTAAACAAGTATGCTGGCGGTCAGGTAGATTGGAGAGGCAAGTTCAGTGGGGCTCTTCCCCCCTCTCCTCCTACAGAACAGTTGCTGGATAGGTACTGGTCCCATGTGGTGAACTGCAGCAGTTGCAGCGCCGGATACAAAGGTGTGAAAGTGCTTGAAGTTGTCTTGCAGGTCGTCGCTCTTTCTTTAGTTGGAATTGTTGCAGCAACCAAGCAGGCTGCCATATCGGTGGCTGCAAGAACTATGCTCGTTGCAGCTGCTATACTGTCATTCGCAGCTTCAAAATGGTTGGCTCATTTTATCTACAAACAGTTTCACTTTCATGACTACAACCATGCTCTTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

168

Amino Acids

18.48

Weight (kDa)

9.25

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25650 AT4G25650
fragaria_vesca	FvH4_3g45360 FvH4_3g45360 FvH4_3g45360 FvH4_3g45400 FvH4_3g45401 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02730 FvH4_7g02730 FvH4_7g02731
malus_domestica	MD03G1005500.v1.1 MD11G1008100.v1.1 MD11G1008200.v1.1
prunus_persica	Prupe.6G005300_v2.0.a1 Prupe.6G005300_v2.0.a1
pyrus_communis	pycom03g00570 pycom11g00550
rosa_chinensis	RchiOBHm_Chr1g0321981 RchiOBHm_Chr5g0083181 RchiOBHm_Chr5g0083211
rosa_laevigata	RLG00000030397 RLG00000030398 RLG00000037017
rosa_multiflora	Rmu_sc0007027.1_g000001 Rmu_sc0028710.1_g000001 Rmu_sc0041156.1_g000001 Rmu_sc0042838.1_g000001 Rmu_ssc0000026.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001290 Rroxscaffold_4G00327380
rosa_rugosa	Rorug01G0034800 Rorug05G0482900 Rorug05G0483300
rosa_samantha	Rh1AG047700 Rh1CG051800 Rh1CG052000 Rh1CG052100 Rh1DG056000 Rh1DG056200 Rh1DG056300 Rh5AG532500 Rh5AG532700 Rh5BG559700 Rh5DG568400
rosa_wichuraiana	Rw1G004350 Rw5G050050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	316
AciI	CCGC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	314, 438
AluBI	AGCT	2 cut(s)	413, 434
AluI	AGCT	2 cut(s)	413, 434
AlwNI	CAGNNNCTG	1 cut(s)	241
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	8 cut(s)	273, 282, 359, 374, 389, 410, 413, 431
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	83, 255
AsuHPI	GGTGA	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	255
BaeI	ACNNNNGTAYC	2 cut(s)	283, 316
BanII	GRGCYC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	38
BbvI	GCAGC	8 cut(s)	285, 294, 361, 371, 376, 400, 422, 443
BciVI	GTATCC	1 cut(s)	284
BfmI	CTRYAG	2 cut(s)	228, 271
BfoI	RGCGCY	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	316
BfuI	GTATCC	1 cut(s)	284
BisI	GCNGC	8 cut(s)	274, 283, 360, 375, 390, 411, 414, 432
BlsI	GCNGC	8 cut(s)	275, 284, 361, 376, 391, 412, 415, 433
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	83, 255
BmiI	GGNNCC	1 cut(s)	257
BmrI	ACTGGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	2 cut(s)	91, 257
BseNI	ACTGG	2 cut(s)	91, 257
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	8 cut(s)	285, 294, 361, 371, 376, 400, 422, 443
BshFI	GGCC	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	81, 288
BslFI	GGGAC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	211
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	257
BspMAI	CTGCAG	1 cut(s)	275
BspMI	ACCTGC	1 cut(s)	316
BspQI	GCTCTTC	2 cut(s)	216, 501
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	91, 257
BssAI	RCCGGY	1 cut(s)	80
Bst4CI	ACNGT	3 cut(s)	237, 423, 468
Bst6I	CTCTTC	2 cut(s)	216, 501
BstAPI	GCANNNNNTGC	1 cut(s)	279
BstC8I	GCNNGC	3 cut(s)	82, 172, 372
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 279, 282
BstNSI	RCATGY	1 cut(s)	108
BstSFI	CTRYAG	2 cut(s)	228, 271
BstV1I	GCAGC	8 cut(s)	285, 294, 361, 371, 376, 400, 422, 443
BstV2I	GAAGAC	1 cut(s)	38
BstXI	CCANNNNNNTGG	1 cut(s)	385
BsuI	GTATCC	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	98, 208
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	3 cut(s)	82, 172, 372
CaiI	CAGNNNCTG	1 cut(s)	241
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	83, 255
Csp6I	GTAC	1 cut(s)	250
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	5 cut(s)	53, 105, 260, 479, 491
CviJI	RGCY	8 cut(s)	80, 84, 209, 374, 389, 413, 434, 449
CviKI_1	RGCY	8 cut(s)	80, 84, 209, 374, 389, 413, 434, 449
CviQI	GTAC	1 cut(s)	250
Eam1104I	CTCTTC	2 cut(s)	216, 501
EarI	CTCTTC	2 cut(s)	216, 501
Eco24I	GRGCYC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	211
FaeI	CATG	5 cut(s)	56, 108, 263, 482, 494
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	5 cut(s)	52, 104, 259, 478, 490
Fnu4HI	GCNGC	8 cut(s)	274, 283, 360, 375, 390, 411, 414, 432
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	8 cut(s)	274, 283, 360, 375, 390, 411, 414, 432
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	8 cut(s)	274, 283, 360, 375, 390, 411, 414, 432
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	2 cut(s)	81, 288
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	5 cut(s)	56, 108, 263, 482, 494
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	2 cut(s)	81, 288
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	3 cut(s)	37, 127, 149
Hpy188III	TCNNGA	2 cut(s)	29, 479
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	335
HpyCH4III	ACNGT	3 cut(s)	237, 423, 468
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	6 cut(s)	273, 282, 325, 359, 392, 410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 279, 282
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	5 cut(s)	56, 108, 263, 482, 494
HspAI	GCGC	1 cut(s)	285
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
LguI	GCTCTTC	2 cut(s)	216, 501
Lsp1109I	GCAGC	8 cut(s)	285, 294, 361, 371, 376, 400, 422, 443
LweI	GCATC	1 cut(s)	118
MaeII	ACGT	1 cut(s)	64
MboII	GAAGA	4 cut(s)	38, 41, 203, 488
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	4 cut(s)	52, 185, 229, 234
MroNI	GCCGGC	1 cut(s)	80
MseI	TTAA	1 cut(s)	158
MslI	CAYNNNNRTG	2 cut(s)	383, 477
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	2 cut(s)	81, 288
MwoI	GCNNNNNNNGC	3 cut(s)	86, 279, 282
NaeI	GCCGGC	1 cut(s)	82
NgoMIV	GCCGGC	1 cut(s)	80
NlaIII	CATG	5 cut(s)	56, 108, 263, 482, 494
NlaIV	GGNNCC	1 cut(s)	257
NspI	RCATGY	1 cut(s)	108
PagI	TCATGA	1 cut(s)	478
PciSI	GCTCTTC	2 cut(s)	216, 501
PdiI	GCCGGC	1 cut(s)	82
PkrI	GCNGC	8 cut(s)	275, 284, 361, 376, 391, 412, 415, 433
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	2 cut(s)	83, 255
PstI	CTGCAG	1 cut(s)	275
PstNI	CAGNNNCTG	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	2 cut(s)	383, 477
SapI	GCTCTTC	2 cut(s)	216, 501
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	8 cut(s)	274, 283, 360, 375, 390, 411, 414, 432
Sau96I	GGNCC	2 cut(s)	83, 255
SchI	GAGTC	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	7 cut(s)	67, 183, 251, 301, 330, 415, 436
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	2 cut(s)	228, 271
SinI	GGWCC	1 cut(s)	255
SmiMI	CAYNNNNRTG	2 cut(s)	383, 477
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	237, 423, 468
TaiI	ACGT	1 cut(s)	67
TasI	AATT	1 cut(s)	351
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	2 cut(s)	98, 208
TseI	GCWGC	8 cut(s)	273, 282, 359, 374, 389, 410, 413, 431
TspDTI	ATGAA	2 cut(s)	41, 467
TspRI	CASTG	2 cut(s)	98, 208
VpaK11BI	GGWCC	1 cut(s)	255
XceI	RCATGY	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.