Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001402

Physical Location & Seq

Genomic Coordinates Forward (+)

37664362 .. 37665404

Gene Structure 1043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45401.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTCATCTTCTATTACAACTGACACTGAAAACCCATCAGCACCACAGGTTGAAACTCAGACCCAAGATGAGAAGTTTGACTGGTATGCCCATTGGTATCCATTGATGCCGGTTTGTGACCTTGACAAAAGGGTACCACATGCAAAGAAAGTTCTGGGCATTGATGTGGTCATGTGGTGGGACAAGAATGAGAGTACATGGAAGGTGTTTGAGGATGCATGTCCTCACAGATTGGCTCCATTGTCTGAAGGGAGGATTGATCAGTGGGGAAGGTTACAATGTGTTTATCATGGCTGGTGTTTTAATGGCTCTGGTGACTGCAAGTTCATTCCTCAAGCACCTAAGGATGGCCCTCCGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

121

Amino Acids

13.79

Weight (kDa)

5.22

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rieske	PF00355	31 - 114	2.2e-24	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25650 AT4G25650
fragaria_vesca	FvH4_3g45360 FvH4_3g45360 FvH4_3g45360 FvH4_3g45400 FvH4_3g45401 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02730 FvH4_7g02730 FvH4_7g02731
malus_domestica	MD03G1005500.v1.1 MD11G1008100.v1.1 MD11G1008200.v1.1
prunus_persica	Prupe.6G005300_v2.0.a1 Prupe.6G005300_v2.0.a1
pyrus_communis	pycom03g00570 pycom11g00550
rosa_chinensis	RchiOBHm_Chr1g0321981 RchiOBHm_Chr5g0083181 RchiOBHm_Chr5g0083211
rosa_laevigata	RLG00000030397 RLG00000030398 RLG00000037017
rosa_multiflora	Rmu_sc0007027.1_g000001 Rmu_sc0028710.1_g000001 Rmu_sc0041156.1_g000001 Rmu_sc0042838.1_g000001 Rmu_ssc0000026.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001290 Rroxscaffold_4G00327380
rosa_rugosa	Rorug01G0034800 Rorug05G0482900 Rorug05G0483300
rosa_samantha	Rh1AG047700 Rh1CG051800 Rh1CG052000 Rh1CG052100 Rh1DG056000 Rh1DG056200 Rh1DG056300 Rh5AG532500 Rh5AG532700 Rh5BG559700 Rh5DG568400
rosa_wichuraiana	Rw1G004350 Rw5G050050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	133
AccB1I	GGYRCC	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	2 cut(s)	135, 196
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	53
AoxI	GGCC	1 cut(s)	349
Asp718I	GGTACC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	326
AxyI	CCTNAGG	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	133
BccI	CCATC	2 cut(s)	43, 341
BciVI	GTATCC	1 cut(s)	108
BclI	TGATCA	1 cut(s)	259
BfuI	GTATCC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	135, 237
BmsI	GCATC	2 cut(s)	96, 205
BpuEI	CTTGAG	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	86
Bse21I	CCTNAGG	1 cut(s)	342
BseGI	GGATG	2 cut(s)	220, 352
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	351
BshNI	GGYRCC	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	110, 356
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	351
Bsp143I	GATC	1 cut(s)	259
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	135, 237
BspT107I	GGYRCC	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	109
BssMI	GATC	1 cut(s)	259
BstDEI	CTNAG	2 cut(s)	57, 342
BstF5I	GGATG	2 cut(s)	220, 352
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstNSI	RCATGY	2 cut(s)	143, 222
Bsu36I	CCTNAGG	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	220, 352
BtsIMutI	CAGTG	2 cut(s)	24, 269
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	134, 195
CviAII	CATG	5 cut(s)	140, 172, 198, 219, 290
CviJI	RGCY	4 cut(s)	236, 294, 309, 351
CviKI_1	RGCY	4 cut(s)	236, 294, 309, 351
CviQI	GTAC	2 cut(s)	134, 195
DdeI	CTNAG	2 cut(s)	57, 342
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	267
Eco81I	CCTNAGG	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	220
FaeI	CATG	5 cut(s)	143, 175, 201, 222, 293
FaiI	YATR	7 cut(s)	87, 141, 173, 199, 220, 291, 361
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	5 cut(s)	139, 171, 197, 218, 289
FbaI	TGATCA	1 cut(s)	259
FokI	GGATG	2 cut(s)	227, 359
HaeIII	GGCC	1 cut(s)	351
HapII	CCGG	2 cut(s)	110, 356
Hin1II	CATG	5 cut(s)	143, 175, 201, 222, 293
HpaII	CCGG	2 cut(s)	110, 356
HphI	GGTGA	1 cut(s)	326
Hpy188I	TCNGA	2 cut(s)	60, 247
HpyAV	CCTTC	3 cut(s)	196, 242, 264
HpyCH4V	TGCA	3 cut(s)	143, 218, 321
HpyF3I	CTNAG	2 cut(s)	57, 342
Hsp92II	CATG	5 cut(s)	143, 175, 201, 222, 293
KpnI	GGTACC	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	6 cut(s)	32, 67, 123, 140, 280, 297
LweI	GCATC	2 cut(s)	96, 205
MaeIII	GTNAC	3 cut(s)	116, 273, 314
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MnlI	CCTC	5 cut(s)	205, 234, 246, 342, 363
Mph1103I	ATGCAT	1 cut(s)	220
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	164
MspI	CCGG	2 cut(s)	110, 356
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	5 cut(s)	143, 175, 201, 222, 293
NlaIV	GGNNCC	2 cut(s)	135, 237
NmuCI	GTSAC	2 cut(s)	116, 314
NsiI	ATGCAT	1 cut(s)	220
NspI	RCATGY	2 cut(s)	143, 222
PspN4I	GGNNCC	2 cut(s)	135, 237
PspPI	GGNCC	1 cut(s)	350
RsaI	GTAC	2 cut(s)	135, 196
RsaNI	GTAC	2 cut(s)	134, 195
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	303
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	350
SetI	ASST	5 cut(s)	51, 123, 207, 275, 343
SfaNI	GCATC	2 cut(s)	96, 205
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
TatI	WGTACW	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	2 cut(s)	31, 269
TseFI	GTSAC	2 cut(s)	116, 314
Tsp45I	GTSAC	2 cut(s)	116, 314
TspDTI	ATGAA	1 cut(s)	316
TspRI	CASTG	2 cut(s)	31, 269
XceI	RCATGY	2 cut(s)	143, 222
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.