Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000026.1

Orthogroup ID

OG0001402

Physical Location & Seq

Genomic Coordinates Forward (+)

34005 .. 37238

Gene Structure 3234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000026.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

atgtcatcctctattgcaactgagactgaaaacccatctggaccacaagttgaaactcaaatccacgatgacaaatttgattggtatgcccattggtacccattgatgccagtctgtgaccttgacaagagagtcccacatgcaaagaaagttctgggtattgatgtggtggtgtggtgggacaaaaatgaaagtacatggaaggtgtttgatgatgcttgtcctcacagattggctccattatctgaagggaggattgatcagtggggaaggttgcagtgtgtttatcatggctggtgttttaatggctctggtgactgcaagttcattcctcaagcacccaaagatggccctccgattcacacttcgaagaaagcatgtgcaggtgcttatccaagtaccgtgcagaatggaatcgtgtggttctggccaagttctgatcctcaatacaaagatattcttgcagagaaaaagcctccctacataccggaaatagatgatccatcatatgctagcttgatgggaaatagggagataccttacgggtacgaggtcttgattgaaaatcttatggaccctgctcatgttccatatgcacattatggaataatgcaaactcgacaacccaaagagaaagctgatagagaagggggcagaccattggacttttatattcctaagttagacataaatggtttcatcgcagagcagaatccaggtcacagtatatttctgccgccatgtgtgttttgtgtttctatctttagtccagttgaccatattagtggggctgcatcctcacctggaactgaaaaggtattatcaccccaaacgggacaaaagcaagctcttttagtgtttatctgcgttccagttagtccaggtaatagcagattgatatggactttcccaagaaactttggcgtttggattgacaggattgttccacgatggatatttcatattgggcaaaacctgattctggactcggatttatatttgcttcatattgaggaacataggataatggatgctagccctacccagtggcagaaagcttgttttgtgccaacaaagtcagatgcccttgttgttggtttccgaaagtggttaaacaagtatgcgggtggtcaggtagattggagaggcaagttcactggggctttaccgcccactgctcctaaagaacagttgttggacaggtaccggtctcatgtggtaaactgcagcagttgcaattctgcctacaaagctctaggcgtgcttgaagtcgtattgcaggtcttctcgttttctttacttggaattgtcgctgcaattaagcaaggagtattatcatcactggctgcgagaactgcgctagttgcaacagctctactatgctttgcaggttcaaaatggttggctcattttatccacaaaaactttcactttcacgactacaaccatgccctggtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

486

Amino Acids

54.58

Weight (kDa)

7.01

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25650 AT4G25650
fragaria_vesca	FvH4_3g45360 FvH4_3g45360 FvH4_3g45360 FvH4_3g45400 FvH4_3g45401 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02720 FvH4_7g02730 FvH4_7g02730 FvH4_7g02731
malus_domestica	MD03G1005500.v1.1 MD11G1008100.v1.1 MD11G1008200.v1.1
prunus_persica	Prupe.6G005300_v2.0.a1 Prupe.6G005300_v2.0.a1
pyrus_communis	pycom03g00570 pycom11g00550
rosa_chinensis	RchiOBHm_Chr1g0321981 RchiOBHm_Chr5g0083181 RchiOBHm_Chr5g0083211
rosa_laevigata	RLG00000030397 RLG00000030398 RLG00000037017
rosa_multiflora	Rmu_sc0007027.1_g000001 Rmu_sc0028710.1_g000001 Rmu_sc0041156.1_g000001 Rmu_sc0042838.1_g000001 Rmu_ssc0000026.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001290 Rroxscaffold_4G00327380
rosa_rugosa	Rorug01G0034800 Rorug05G0482900 Rorug05G0483300
rosa_samantha	Rh1AG047700 Rh1CG051800 Rh1CG052000 Rh1CG052100 Rh1DG056000 Rh1DG056200 Rh1DG056300 Rh5AG532500 Rh5AG532700 Rh5BG559700 Rh5DG568400
rosa_wichuraiana	Rw1G004350 Rw5G050050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	374
AasI	GACNNNNNNGTC	1 cut(s)	131
Acc36I	ACCTGC	3 cut(s)	374, 1270, 1379
Acc65I	GGTACC	2 cut(s)	96, 1203
AccB1I	GGYRCC	2 cut(s)	96, 1203
AccB7I	CCANNNNNTGG	1 cut(s)	1453
AciI	CCGC	3 cut(s)	737, 1124, 1169
AclWI	GGATC	2 cut(s)	434, 494
AcoI	YGGCCR	1 cut(s)	428
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	5 cut(s)	98, 196, 400, 548, 1205
AfiI	CCNNNNNNNGG	4 cut(s)	347, 833, 982, 1453
AgeI	ACCGGT	1 cut(s)	1206
AgsI	TTSAA	4 cut(s)	53, 563, 1268, 1395
AjnI	CCWGG	4 cut(s)	715, 802, 880, 1452
AluBI	AGCT	6 cut(s)	516, 638, 848, 1058, 1253, 1373
AluI	AGCT	6 cut(s)	516, 638, 848, 1058, 1253, 1373
Alw26I	GTCTC	2 cut(s)	17, 1215
AlwI	GGATC	2 cut(s)	434, 494
AoxI	GGCC	2 cut(s)	349, 428
ApeKI	GCWGC	4 cut(s)	791, 1227, 1313, 1346
ApoI	RAATTY	1 cut(s)	74
AsiGI	ACCGGT	1 cut(s)	1206
Asp718I	GGTACC	2 cut(s)	96, 1203
AspLEI	GCGC	1 cut(s)	1360
AspS9I	GGNCC	3 cut(s)	41, 350, 574
AsuHPI	GGTGA	3 cut(s)	326, 792, 816
AsuII	TTCGAA	1 cut(s)	368
AsuNHI	GCTAGC	2 cut(s)	512, 1034
AvaII	GGWCC	2 cut(s)	41, 574
BalI	TGGCCA	1 cut(s)	430
BanI	GGYRCC	2 cut(s)	96, 1203
BbsI	GAAGAC	1 cut(s)	1276
BbvI	GCAGC	4 cut(s)	778, 1239, 1300, 1333
BccI	CCATC	5 cut(s)	43, 341, 511, 514, 945
BciT130I	CCWGG	4 cut(s)	717, 804, 882, 1454
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	17, 1215
BfaI	CTAG	4 cut(s)	513, 1035, 1256, 1361
BfmI	CTRYAG	1 cut(s)	1225
BfuAI	ACCTGC	3 cut(s)	374, 1270, 1379
BisI	GCNGC	5 cut(s)	737, 792, 1228, 1314, 1347
BlsI	GCNGC	5 cut(s)	738, 793, 1229, 1315, 1348
Bme1390I	CCNGG	4 cut(s)	717, 804, 882, 1454
Bme18I	GGWCC	2 cut(s)	41, 574
BmgT120I	GGNCC	3 cut(s)	41, 350, 574
BmiI	GGNNCC	4 cut(s)	98, 237, 576, 1205
BmrFI	CCNGG	4 cut(s)	717, 804, 882, 1454
BmrI	ACTGGG	2 cut(s)	1039, 1167
BmsI	GCATC	5 cut(s)	96, 205, 803, 1021, 1072
BmtI	GCTAGC	2 cut(s)	516, 1038
BmuI	ACTGGG	2 cut(s)	1039, 1167
BpiI	GAAGAC	1 cut(s)	1276
Bpu14I	TTCGAA	1 cut(s)	368
BpuEI	CTTGAG	1 cut(s)	318
BsaI	GGTCTC	1 cut(s)	1215
BsaJI	CCNNGG	1 cut(s)	1452
BsaWI	WCCGGW	2 cut(s)	487, 1206
Bsc4I	CCNNNNNNNGG	4 cut(s)	347, 833, 982, 1453
Bse118I	RCCGGY	1 cut(s)	1206
Bse1I	ACTGG	6 cut(s)	110, 770, 872, 1045, 1162, 1347
BseBI	CCWGG	4 cut(s)	717, 804, 882, 1454
BseDI	CCNNGG	1 cut(s)	1452
BseGI	GGATG	3 cut(s)	5, 794, 1036
BseLI	CCNNNNNNNGG	4 cut(s)	347, 833, 982, 1453
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	6 cut(s)	110, 770, 872, 1045, 1162, 1347
BseXI	GCAGC	4 cut(s)	778, 1239, 1300, 1333
BsgI	GTGCAG	2 cut(s)	402, 425
BshFI	GGCC	2 cut(s)	351, 430
BshNI	GGYRCC	2 cut(s)	96, 1203
BshTI	ACCGGT	1 cut(s)	1206
BsiSI	CCGG	2 cut(s)	488, 1207
BslFI	GGGAC	3 cut(s)	119, 194, 849
BslI	CCNNNNNNNGG	4 cut(s)	347, 833, 982, 1453
BsmAI	GTCTC	2 cut(s)	17, 1215
BsmFI	GGGAC	3 cut(s)	119, 194, 849
BsnI	GGCC	2 cut(s)	351, 430
Bso31I	GGTCTC	1 cut(s)	1215
Bsp119I	TTCGAA	1 cut(s)	368
Bsp143I	GATC	3 cut(s)	259, 439, 499
BspACI	CCGC	3 cut(s)	737, 1124, 1169
BspANI	GGCC	2 cut(s)	351, 430
BspCNI	CTCAG	1 cut(s)	13
BspLI	GGNNCC	4 cut(s)	98, 237, 576, 1205
BspMAI	CTGCAG	1 cut(s)	1229
BspMI	ACCTGC	3 cut(s)	374, 1270, 1379
BspOI	GCTAGC	2 cut(s)	516, 1038
BspPI	GGATC	2 cut(s)	434, 494
BspT104I	TTCGAA	1 cut(s)	368
BspT107I	GGYRCC	2 cut(s)	96, 1203
BspTNI	GGTCTC	1 cut(s)	1215
BsrFI	RCCGGY	1 cut(s)	1206
BsrI	ACTGG	6 cut(s)	110, 770, 872, 1045, 1162, 1347
BssAI	RCCGGY	1 cut(s)	1206
BssECI	CCNNGG	1 cut(s)	1452
BssMI	GATC	3 cut(s)	259, 439, 499
Bst2UI	CCWGG	4 cut(s)	717, 804, 882, 1454
Bst4CI	ACNGT	3 cut(s)	403, 725, 1191
BstAPI	GCANNNNNTGC	1 cut(s)	1233
BstBI	TTCGAA	1 cut(s)	368
BstC8I	GCNNGC	4 cut(s)	514, 846, 1036, 1262
BstDEI	CTNAG	2 cut(s)	21, 678
BstF5I	GGATG	3 cut(s)	5, 794, 1036
BstHHI	GCGC	1 cut(s)	1360
BstKTI	GATC	3 cut(s)	262, 442, 502
BstMAI	GTCTC	2 cut(s)	17, 1215
BstMBI	GATC	3 cut(s)	259, 439, 499
BstMWI	GCNNNNNNNGC	4 cut(s)	1233, 1250, 1355, 1364
BstNI	CCWGG	4 cut(s)	717, 804, 882, 1454
BstNSI	RCATGY	2 cut(s)	143, 381
BstSCI	CCNGG	4 cut(s)	715, 802, 880, 1452
BstSFI	CTRYAG	1 cut(s)	1225
BstV1I	GCAGC	4 cut(s)	778, 1239, 1300, 1333
BstV2I	GAAGAC	1 cut(s)	1276
BstXI	CCANNNNNNTGG	1 cut(s)	785
BsuRI	GGCC	2 cut(s)	351, 430
BtgZI	GCGATG	1 cut(s)	685
BtsCI	GGATG	3 cut(s)	5, 794, 1036
BtsI	GCAGTG	2 cut(s)	284, 1173
BtsIMutI	CAGTG	6 cut(s)	269, 284, 1052, 1155, 1173, 1340
BveI	ACCTGC	3 cut(s)	374, 1270, 1379
Cac8I	GCNNGC	4 cut(s)	514, 846, 1036, 1262
CfoI	GCGC	1 cut(s)	1360
Cfr10I	RCCGGY	1 cut(s)	1206
Cfr13I	GGNCC	3 cut(s)	41, 350, 574
Csp6I	GTAC	5 cut(s)	97, 195, 399, 547, 1204
CspAI	ACCGGT	1 cut(s)	1206
CviAII	CATG	8 cut(s)	140, 198, 290, 378, 584, 741, 1214, 1448
CviQI	GTAC	5 cut(s)	97, 195, 399, 547, 1204
DdeI	CTNAG	2 cut(s)	21, 678
DpnI	GATC	3 cut(s)	261, 441, 501
DpnII	GATC	3 cut(s)	259, 439, 499
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	428
Eco31I	GGTCTC	1 cut(s)	1215
Eco47I	GGWCC	2 cut(s)	41, 574
Eco57I	CTGAAG	1 cut(s)	267
EcoRII	CCWGG	4 cut(s)	715, 802, 880, 1452
FaeI	CATG	8 cut(s)	143, 201, 293, 381, 587, 744, 1217, 1451
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FaqI	GGGAC	3 cut(s)	119, 194, 849
FatI	CATG	8 cut(s)	139, 197, 289, 377, 583, 740, 1213, 1447
FauI	CCCGC	1 cut(s)	1117
FauNDI	CATATG	2 cut(s)	508, 592
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	5 cut(s)	737, 792, 1228, 1314, 1347
FokI	GGATG	2 cut(s)	781, 1043
Fsp4HI	GCNGC	5 cut(s)	737, 792, 1228, 1314, 1347
FspBI	CTAG	4 cut(s)	513, 1035, 1256, 1361
GlaI	GCGC	1 cut(s)	1359
GluI	GCNGC	5 cut(s)	737, 792, 1228, 1314, 1347
HaeIII	GGCC	2 cut(s)	351, 430
HapII	CCGG	2 cut(s)	488, 1207
HhaI	GCGC	1 cut(s)	1360
Hin1II	CATG	8 cut(s)	143, 201, 293, 381, 587, 744, 1217, 1451
Hin6I	GCGC	1 cut(s)	1358
HinP1I	GCGC	1 cut(s)	1358
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HindIII	AAGCTT	1 cut(s)	1056
HinfI	GANTC	6 cut(s)	132, 358, 414, 712, 979, 986
HpaII	CCGG	2 cut(s)	488, 1207
HphI	GGTGA	3 cut(s)	326, 792, 816
Hpy166II	GTNNAC	3 cut(s)	775, 1155, 1222
Hpy188I	TCNGA	6 cut(s)	247, 357, 439, 991, 1081, 1103
Hpy188III	TCNNGA	4 cut(s)	39, 556, 983, 1436
Hpy8I	GTNNAC	3 cut(s)	775, 1155, 1222
HpyAV	CCTTC	4 cut(s)	196, 242, 264, 641
HpyCH4III	ACNGT	3 cut(s)	403, 725, 1191
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1233, 1250, 1355, 1364
HpyF3I	CTNAG	2 cut(s)	21, 678
Hsp92II	CATG	8 cut(s)	143, 201, 293, 381, 587, 744, 1217, 1451
HspAI	GCGC	1 cut(s)	1358
KpnI	GGTACC	2 cut(s)	100, 1207
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	259, 439, 499
LmnI	GCTCC	2 cut(s)	241, 1183
Lsp1109I	GCAGC	4 cut(s)	778, 1239, 1300, 1333
LweI	GCATC	5 cut(s)	96, 205, 803, 1021, 1072
MaeI	CTAG	4 cut(s)	513, 1035, 1256, 1361
MaeIII	GTNAC	3 cut(s)	116, 314, 719
MalI	GATC	3 cut(s)	261, 441, 501
MboI	GATC	3 cut(s)	259, 439, 499
MboII	GAAGA	2 cut(s)	382, 1276
MlsI	TGGCCA	1 cut(s)	430
MluCI	AATT	4 cut(s)	74, 1237, 1305, 1317
MluNI	TGGCCA	1 cut(s)	430
MlyI	GAGTC	2 cut(s)	141, 980
MmeI	TCCRAC	1 cut(s)	1176
Mox20I	TGGCCA	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	430
MseI	TTAA	3 cut(s)	303, 1112, 1320
MslI	CAYNNNNRTG	1 cut(s)	783
Msp20I	TGGCCA	1 cut(s)	430
MspI	CCGG	2 cut(s)	488, 1207
MspR9I	CCNGG	4 cut(s)	717, 804, 882, 1454
MvaI	CCWGG	4 cut(s)	717, 804, 882, 1454
MwoI	GCNNNNNNNGC	4 cut(s)	1233, 1250, 1355, 1364
NdeI	CATATG	2 cut(s)	508, 592
NdeII	GATC	3 cut(s)	259, 439, 499
NheI	GCTAGC	2 cut(s)	512, 1034
NlaIII	CATG	8 cut(s)	143, 201, 293, 381, 587, 744, 1217, 1451
NlaIV	GGNNCC	4 cut(s)	98, 237, 576, 1205
NmuCI	GTSAC	3 cut(s)	116, 314, 719
NspI	RCATGY	2 cut(s)	143, 381
NspV	TTCGAA	1 cut(s)	368
PaqCI	CACCTGC	1 cut(s)	374
PfeI	GAWTC	4 cut(s)	358, 414, 712, 979
PflMI	CCANNNNNTGG	1 cut(s)	1453
PinAI	ACCGGT	1 cut(s)	1206
PkrI	GCNGC	5 cut(s)	738, 793, 1229, 1315, 1348
PleI	GAGTC	2 cut(s)	140, 980
PpsI	GAGTC	2 cut(s)	140, 980
Psp6I	CCWGG	4 cut(s)	715, 802, 880, 1452
PspGI	CCWGG	4 cut(s)	715, 802, 880, 1452
PspN4I	GGNNCC	4 cut(s)	98, 237, 576, 1205
PspPI	GGNCC	3 cut(s)	41, 350, 574
PstI	CTGCAG	1 cut(s)	1229
RsaI	GTAC	5 cut(s)	98, 196, 400, 548, 1205
RsaNI	GTAC	5 cut(s)	97, 195, 399, 547, 1204
RseI	CAYNNNNRTG	1 cut(s)	783
SaqAI	TTAA	3 cut(s)	303, 1112, 1320
SatI	GCNGC	5 cut(s)	737, 792, 1228, 1314, 1347
Sau3AI	GATC	3 cut(s)	259, 439, 499
Sau96I	GGNCC	3 cut(s)	41, 350, 574
SchI	GAGTC	2 cut(s)	141, 980
ScrFI	CCNGG	4 cut(s)	717, 804, 882, 1454
SfaNI	GCATC	5 cut(s)	96, 205, 803, 1021, 1072
SfcI	CTRYAG	1 cut(s)	1225
SfuI	TTCGAA	1 cut(s)	368
SinI	GGWCC	2 cut(s)	41, 574
SmiMI	CAYNNNNRTG	1 cut(s)	783
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	4 cut(s)	74, 1237, 1305, 1317
SsiI	CCGC	3 cut(s)	737, 1124, 1169
SspMI	CTAG	4 cut(s)	513, 1035, 1256, 1361
StyD4I	CCNGG	4 cut(s)	715, 802, 880, 1452
TaaI	ACNGT	3 cut(s)	403, 725, 1191
TaqI	TCGA	2 cut(s)	368, 619
TasI	AATT	4 cut(s)	74, 1237, 1305, 1317
TatI	WGTACW	1 cut(s)	194
TauI	GCSGC	1 cut(s)	739
TfiI	GAWTC	4 cut(s)	358, 414, 712, 979
Tru1I	TTAA	3 cut(s)	303, 1112, 1320
Tru9I	TTAA	3 cut(s)	303, 1112, 1320
TscAI	CASTG	6 cut(s)	269, 284, 1052, 1162, 1180, 1347
TseFI	GTSAC	3 cut(s)	116, 314, 719
TseI	GCWGC	4 cut(s)	791, 1227, 1313, 1346
Tsp45I	GTSAC	3 cut(s)	116, 314, 719
TspDTI	ATGAA	5 cut(s)	204, 316, 688, 950, 995
TspRI	CASTG	6 cut(s)	269, 284, 1052, 1162, 1180, 1347
Van91I	CCANNNNNTGG	1 cut(s)	1453
VpaK11BI	GGWCC	2 cut(s)	41, 574
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	2 cut(s)	143, 381
XspI	CTAG	4 cut(s)	513, 1035, 1256, 1361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.