Rorug05G0482900

Protochlorophyllide-dependent translocon component 52

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
66416911 .. 66418068
1158 bp
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UTR
Exon/CDS
Intron
Rorug05G0482900.1

Sequence Viewer

Length: 441 bp
ATGGTTAGTGGGAGAGCCTTCTGTTCTGGTGCAGATGCTATTACCCTTTATCAACTAGTCATTCAAGGGAATGTTGAGGAATGCAGAAAGTTTTCCGAGACATTGTATAAGTTTGAATATATTCAAGGAACATACTTGAAGCCACATGTAGATATCCTGGATGGTATAACTATGGGATGTGGGGCTGGAATTTCACTCCCAGGAATGTTTCGTGTGGTGACTGATAAAACTGTCTTTTGCAATCCAGAGGCTCAAATGGGTTTCCATCCTGATGCAGGAGCTTCATATTATCTTTCTGGTCTACCTGGCTACTTAGATAACATAAACTTAGAAAATTGGAGATGTTCTGCCTTTATCAGAATTTCAAGTTCTACATTTCTAGATAAATGGAGTTTCATTCACTGCCCATTCTTTGTTTCATTTGTGCATGAGAATACTTAG

Protein Analysis

146

Amino Acids

16.33

Weight (kDa)

5.44

Isoelectric Point (pI)

21.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 3 - 105 2.4e-32 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 4 - 98 6.8e-06 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 301
AcsI RAATTY 2 cut(s) 189, 360
AfiI CCNNNNNNNGG 1 cut(s) 275
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 5 cut(s) 65, 116, 125, 139, 366
AhlI ACTAGT 1 cut(s) 55
AjnI CCWGG 3 cut(s) 156, 199, 304
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
Alw26I GTCTC 1 cut(s) 92
ApoI RAATTY 2 cut(s) 189, 360
Asp700I GAANNNNTTC 2 cut(s) 91, 120
AsuHPI GGTGA 1 cut(s) 229
BccI CCATC 2 cut(s) 155, 273
BciT130I CCWGG 3 cut(s) 158, 201, 306
BcoDI GTCTC 1 cut(s) 92
BcuI ACTAGT 1 cut(s) 55
BfaI CTAG 2 cut(s) 56, 380
Bme1390I CCNGG 3 cut(s) 158, 201, 306
BmrFI CCNGG 3 cut(s) 158, 201, 306
BmsI GCATC 2 cut(s) 25, 262
BsaJI CCNNGG 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 275
BseBI CCWGG 3 cut(s) 158, 201, 306
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 3 cut(s) 166, 182, 265
BseLI CCNNNNNNNGG 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 199
Bst2UI CCWGG 3 cut(s) 158, 201, 306
Bst4CI ACNGT 1 cut(s) 232
BstDEI CTNAG 3 cut(s) 313, 328, 438
BstENI CCTNNNNNAGG 1 cut(s) 273
BstF5I GGATG 3 cut(s) 166, 182, 265
BstMAI GTCTC 1 cut(s) 92
BstNI CCWGG 3 cut(s) 158, 201, 306
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 3 cut(s) 156, 199, 304
BtsCI GGATG 3 cut(s) 166, 182, 265
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 400
CviAII CATG 2 cut(s) 146, 428
CviJI RGCY 6 cut(s) 17, 142, 185, 251, 281, 309
CviKI_1 RGCY 6 cut(s) 17, 142, 185, 251, 281, 309
DdeI CTNAG 3 cut(s) 313, 328, 438
Eco32I GATATC 1 cut(s) 154
EcoNI CCTNNNNNAGG 1 cut(s) 273
EcoRII CCWGG 3 cut(s) 156, 199, 304
EcoRV GATATC 1 cut(s) 154
FaeI CATG 2 cut(s) 149, 431
FaiI YATR 9 cut(s) 108, 120, 133, 147, 167, 173, 286, 323, 429
FatI CATG 2 cut(s) 145, 427
FblI GTMKAC 1 cut(s) 301
FokI GGATG 3 cut(s) 173, 189, 252
FspBI CTAG 2 cut(s) 56, 380
Hin1II CATG 2 cut(s) 149, 431
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 2 cut(s) 97, 359
Hpy188III TCNNGA 3 cut(s) 245, 269, 380
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 5 cut(s) 32, 84, 240, 275, 427
HpyF3I CTNAG 3 cut(s) 313, 328, 438
Hsp92II CATG 2 cut(s) 149, 431
LmnI GCTCC 1 cut(s) 278
LweI GCATC 2 cut(s) 25, 262
MaeI CTAG 2 cut(s) 56, 380
MaeIII GTNAC 1 cut(s) 217
MluCI AATT 3 cut(s) 189, 334, 360
MnlI CCTC 2 cut(s) 70, 241
MroXI GAANNNNTTC 2 cut(s) 91, 120
MslI CAYNNNNRTG 1 cut(s) 270
MspR9I CCNGG 3 cut(s) 158, 201, 306
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 3 cut(s) 158, 201, 306
NlaIII CATG 2 cut(s) 149, 431
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 1 cut(s) 149
PciI ACATGT 1 cut(s) 145
PctI GAATGC 1 cut(s) 86
PdmI GAANNNNTTC 2 cut(s) 91, 120
PfoI TCCNGGA 1 cut(s) 156
PscI ACATGT 1 cut(s) 145
Psp6I CCWGG 3 cut(s) 156, 199, 304
PspGI CCWGG 3 cut(s) 156, 199, 304
RseI CAYNNNNRTG 1 cut(s) 270
ScrFI CCNGG 3 cut(s) 158, 201, 306
SetI ASST 2 cut(s) 283, 307
SfaNI GCATC 2 cut(s) 25, 262
SmiMI CAYNNNNRTG 1 cut(s) 270
SpeI ACTAGT 1 cut(s) 55
Sse9I AATT 3 cut(s) 189, 334, 360
SspMI CTAG 2 cut(s) 56, 380
StyD4I CCNGG 3 cut(s) 156, 199, 304
TaaI ACNGT 1 cut(s) 232
TasI AATT 3 cut(s) 189, 334, 360
TscAI CASTG 1 cut(s) 407
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 3 cut(s) 273, 385, 408
TspRI CASTG 1 cut(s) 407
XagI CCTNNNNNAGG 1 cut(s) 273
XapI RAATTY 2 cut(s) 189, 360
XbaI TCTAGA 1 cut(s) 379
XceI RCATGY 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 301
XmnI GAANNNNTTC 2 cut(s) 91, 120
XspI CTAG 2 cut(s) 56, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.